10.1186/1471-2105-13-20

graphite - a Bioconductor package to convert pathway topology to gene network
Cited by: 157
Author(s): Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi
Software Mentions: 7
Published: over 14 years ago

10.1038/s41598-019-39669-2

Parallel colonization of subalpine habitats in the central European mountains by Primula elatior
Cited by: 13
Author(s): Veronika Konečná, Michael Nowak, Filip Kolář
Software Mentions: 7
Published: over 7 years ago

10.3390/biom11081245

Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review
Cited by: 16
Author(s): Fotis A. Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas, Mikaela Koutrouli, Foteini Thanati, Kleanthi Voutsadaki, Maria Gkonta, Joana Hotova, Ioannis Kasionis, Pantelis Hatzis, Georgios A. Pavlopoulos
Software Mentions: 7
Published: almost 5 years ago

10.1080/19490976.2021.1927634

Influence of pig farming on human Gut Microbiota: role of airborne microbial communities
Cited by: 5
Author(s): Julia Moor, Tsering Wüthrich, Suzanne Aebi, Nadezda Mostacci, Gudrun Overesch, Anne Oppliger, Markus Hilty
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.6062

Remotely sensed forest understory density and nest predator occurrence interact to predict suitable breeding habitat and the occurrence of a resident boreal bird species
Cited by: 8
Author(s): Julian Klein, Paul J. Haverkamp, Eva Lindberg, Michael Griesser, Sönke Eggers
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0216229

Effects of cropping, smoothing, triangle count, and mesh resolution on 6 dental topographic metrics
Cited by: 23
Author(s): Michael A. Berthaume, Julia M. Winchester, Kornelius Kupczik
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0256859

Cultural differences in stress and affection following social support receipt
Cited by: 7
Author(s): Vida Pourmand, Kendall A. Lawley, Barbara J. Lehman
Software Mentions: 7
Published: almost 5 years ago

10.1002/ece3.5573

Signal and reward in wild fleshy fruits: Does fruit scent predict nutrient content?
Cited by: 23
Author(s): Omer Nevo, Diary Razafimandimby, Kim Valenta, Juan Antonio James Jeffrey, Christoph Reisdorff, Colin A. Chapman, Jörg U. Ganzhorn, Manfred Ayasse
Software Mentions: 7
Published: almost 7 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.4835

Pollinator size and its consequences: Robust estimates of body size in pollinating insects
Cited by: 61
Author(s): Liam K. Kendall, Romina Rader, Vesna Gagić, Daniel P. Cariveau, Matthias Albrecht, Katherine C. R. Baldock, Breno Magalhães Freitas, Mark Hall, Andrea Holzschuh, Francisco P. Molina, Joanne M. Morten, Janaely J.S. Pereira, Zachary M. Portman, Stuart P. M. Roberts, Juanita Rodríguez, Laura Russo, Louis Sutter, Nicolas Vereecken, Ignasi Bartomeus
Software Mentions: 7
Published: over 7 years ago

10.1111/eva.12724

Hybridization rate and hybrid fitness for <i>Camelina microcarpa</i> Andrz. ex DC (♀) and <i>Camelina sativa</i> (L.) Crantz(Brassicaceae) (♂)
Cited by: 19
Author(s): Sara L. Martin, Beatriz Lujan-Toro, Connie A. Sauder, Tracey James, Sara Ohadi, Linda M. Hall
Software Mentions: 7
Published: over 7 years ago

10.3390/jfmk5040072

Body Composition Changes over Multiple Academic Years in Female Collegiate Soccer Players
Cited by: 0
Author(s): Austin Katona, Caroline Riewe, Angela Bruzina, Nicholas J. Ollberding, Mary Ankrom, Jon G. Divine, Robert E. Mangine, Abigail Peairs
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2105-16-S11-S4

Epiviz: a view inside the design of an integrated visual analysis software for genomics
Cited by: 3
Author(s): Florin Chelaru, Héctor Corrada Bravo
Software Mentions: 7
Published: almost 11 years ago

10.1111/eva.12935

The power and limitations of gene expression pathway analyses toward predicting population response to environmental stressors
Cited by: 9
Author(s): Brenna Callista Moreau Stanford, Danielle Jessica Clake, Matthew R. J. Morris, Sean M. Rogers
Software Mentions: 7
Published: over 6 years ago

10.1186/s13293-020-00312-9

Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data
Cited by: 27
Author(s): Kimberly C. Olney, Sarah M. Brotman, Jocelyn P. Andrews, Valeria A. Valverde-Vesling, Melissa A. Wilson
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2105-14-145

Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform
Cited by: 10
Author(s): Josh Eckels, Cory Nathe, Elizabeth Nelson, Sara G Shoemaker, Elizabeth Van Nostrand, Nicole L. Yates, Vicki C. Ashley, Linda J. Harris, Mark Bollenbeck, Youyi Fong, Georgia D. Tomaras, Britt Piehler
Software Mentions: 7
Published: about 13 years ago

10.1186/s12885-017-3689-3

GRcalculator: an online tool for calculating and mining dose–response data
Cited by: 57
Author(s): Nicholas Clark, Marc Hafner, Michal Kouril, Liz Williams, Jeremy Muhlich, Marcin Pilarczyk, Mario Niepel, Peter K. Sorger, Mario Medvedovic
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.4052

Phylogenetic signal in tooth wear dietary niche proxies
Cited by: 23
Author(s): Danielle Fraser, Ryan J. Haupt, W. Andrew Barr
Software Mentions: 7
Published: about 8 years ago

10.1186/s13007-019-0440-x

Comparing time series transcriptome data between plants using a network module finding algorithm
Cited by: 6
Author(s): Jiyoung Lee, Lenwood S. Heath, Ruth Grene, Song Li
Software Mentions: 7
Published: about 7 years ago

10.1186/s12868-017-0371-2

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2
Cited by: 7
Author(s): Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William H. Alexander, David Beeman, Paweł Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji Kawai, Junko Suzuki, Hiroki Mori, Minoru Asada, Sorinel A. Oprisan, Austin I. Dave, Tahereh Babaie, Peter Robinson, Alejandro Tabas, Martin Andermann, André Rupp, Emili Balaguer‐Ballester, Henrik Lindén, Rasmus Kordt Christensen, Mari Nakamura, Tania Rinaldi Barkat, Zach Tosi, John M. Beggs, Davide Lonardoni, Fabio Boi, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Joanna Jędrzejewska‐Szmek, Daniel B. Dormán, Kim T. Blackwell, Christoph Bauermeister, Hanna Keren, Jochen Braun, João V. Dornas, Eirini Mavritsaki, Silvio Aldrovandi, Emma K. Bridger, Sukbin Lim, Nicolas Brunel, Anatoly Buchin, Clifford Charles Kerr, Anton V. Chizhov, Gilles Huberfeld, Richard Miles, Boris Gutkin, Martin Spencer, Hamish Meffin, David B. Grayden, Anthony N. Burkitt, Catherine E. Davey, Liangyu Tao, Vineet Tiruvadi, Rehman Ali, Helen S. Mayberg, Robert J. Butera, Cengiz Günay, Damon G. Lamb, Ronald L. Calabrese, Anca Doloc-Mihu, Víctor J. López‐Madrona, Fernanda S. Matias, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Alice Geminiani, Alessandra Pedrocchi, Egidio D’Angelo, Claudia Casellato, Ankur Chauhan, Karthik Soman, V. Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Chao-Chun Chuang, Nan-yow Chen, Mehdi Bayati, Jan Melchior, Laurenz Wiskott, Amir Azizi, Kamran Diba, Sen Cheng, Elena Y. Smirnova, E. G. Yakimova, Chi-Tin Shih, Dorian Florescu, Daniel Coca, Julie Courtiol, Viktor K. Jirsa, R. J. M. Covolan, Bartosz Teleńczuk, Richard Kempter, Gabriel Curio, Alain Destexhe, Jessica Parker, Alexander N. Klishko, Boris I. Prilutsky, Gennady Cymbalyuk, Felix Franke, Andreas Hierlemann, Rava Azeredo da Silveira, Stefano Casali, Stefano Masoli, Martina Francesca Rizza, Yinming Sun, Willy Wong, Faranak Farzan, Daniel M. Blumberger, Zafiris J. Daskalakis, Svitlana Popovych, Shivakumar Viswanathan, Nils Rosjat, Christian Grefkes, Silvia Daun, Damiano Gentiletti, Piotr Suffczyński, Vadym Gnatkovski, Marco de Curtis, Hyeonsu Lee, Se‐Bum Paik, Woochul Choi, Jaeson Jang, Youngjin Park, Jun Song, Min Song, Vicente Pallarés, Matthieu Gilson, Simone Kühn, Andrea Insabato, Gustavo Deco, Katharina Glomb, Adrián Ponce‐Alvarez, Petra Ritter, Adrià Tauste Campo, Alexander Thiele, F. Deeba, P. A. Robinson, Sacha J. van Albada, Andrew Rowley, Michael Hopkins, Maximilian Schmidt, Alan B. Stokes, David Lester, Steve Furber, Markus Diesmann, Alessandro Barri, Martin T. Wiechert, David A. DiGregorio, Alexander G. Dimitrov, Catalina Vich, Rune W. Berg, Antoni Guillamón, Susanne Ditlevsen, Romain D. Cazé, Benoît Girard, Stéphane Doncieux, Nicolas Doyon, Frank Boahen, Patrick Desrosiers, Edward Laurence, Louis J. Dubé, Eleonora Russo, Daniel Durstewitz, Dominik Schmidt, Tuomo Mäki‐Marttunen, Florian Krull, Francesco Bettella, Christoph Metzner, Anna Devor, Srdjan Djurovic, Anders M. Dale, Ole A. Andreassen, Gaute T. Einevoll, Solveig Næss, Torbjørn V. Ness, Geir Halnes, Eric Halgren, Klas H. Pettersen, Marte J. Sætra, Espen Hagen, Alina Schiffer, Axel Grzymisch, Malte Persike, Udo Ernst, Daniel Harnack, Nergis Tömen, Stefano Zucca, Valentina Pasquale, Giuseppe Pica, Manuel Molano-Mazón, Michela Chiappalone, Stefano Panzeri, Tommaso Fellin, Kelvin S. Oie, David L. Boothe, Joshua C. Crone, Alfred B. Yu, Melvin Felton, Isma Zulfiqar, Michelle Moerel, Peter De Weerd, Elia Formisano, Piotr J. Franaszczuk, Roland Diggelmann, Michele Fiscella, Domenico Guarino, Ján Antolík, Andrew Davison, Yves Frégnac, Benjamin Xavier Etienne, Flavio Fröhlich, Jérémie Lefebvre, Encarni Marcos, Maurizio Mattia, Aldo Genovesio, Leonid Fedorov, Tjeerd M. H. Dijkstra, Louisa Sting, Howard S. Hock, Martin A. Giese, Laure Buhry, Clément Langlet, Francesco Giovannini, Christophe Verbist, Stefano Salvadè, Michèle Giugliano, James A. Henderson, Hendrik Wernecke, Bulcsú Sándor, Claudius Gros, Nicole Voges, Paulina Dabrovska, Alexa Riehle, Thomas Brochier, Sonja Grün, Y. T. Gu, Pulin Gong, Grégory Dumont, Nikita A. Novikov, Parul Tewatia, Olivia Eriksson, Andrei Kramer, João Pedro Gonçalves dos Santos, Alexandra Jauhiainen, Jeanette Hellgren Kotaleski, Jovana J. Belić, Arvind Kumar, Masanori Shimono, Naomichi Hatano, Subutai Ahmad, Yuwei Cui, Jeff Hawkins, Johanna Senk, Karolína Korvasová, Tom Tetzlaff, Moritz Helias, Tobias Kühn, Michael Denker, PierGianLuca Porta Mana, David Dahmen, Jannis Schuecker, Sven Goedeke, Christian Keup, Katja Heuer, Rembrandt Bakker, Paul Tiesinga, Roberto Toro, Wei Qin, Alex E. Hadjinicolaou, M. Ibbotson, Tatiana Kameneva, William W. Lytton, Lealem Mulugeta, Andrew Drach, Jerry G. Myers, Marc Horner, Rajanikanth Vadigepalli, Tina Morrison, Marlei Walton, Martin J. Steele, C. Anthony Hunt, Nicoladie D. Tam, Rodrigo Amaducci, Carlos Múñiz, Manuel Reyes-Sánchez, Francisco B. Rodríguez, Pablo Varona, Joseph T. Cronin, Matthias Hennig, Elisabetta Iavarone, Jane Yi, Ying Shi, Bas-Jan Zandt, Werner Van Geit, Christian Rössert, Henry Markram, Sean Hill, Christian O’Reilly, Rodrigo Perin, Huanxiang Lu, Alexander Bryson, Michal Hadrava, Jaroslav Hlinka, Ryosuke Hosaka, Mark Olenik, Conor Houghton, Nicolangelo Iannella, Thomas Lavstsen, Rebecca Kotsakidis, Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hirotaka Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda, Samira Abbasi, Amber E. Hudson, Detlef H. Heck, Dieter Jaeger, Joel Lee, Skirmantas Janušonis, Maria Luisa Saggio, Andreas Spiegler, William C. Stacey, Christophe Bernard, Davide Lillo, Spase Petkoski, Mark Drakesmith, Derek K. Jones, Ali Sadegh Zadeh, C. Kambhampati, Jan Karbowski, Zeynep Gokcen Kaya, Yair Lakretz, Alessandro Treves, Lily W. Li, Joseph T. Lizier, Cliff C. Kerr, Timothée Masquelier, Saeed Reza Kheradpisheh, Hojeong Kim, Chang Sub Kim, J. Marakshina, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, Kanako Taniguchi, Katsunori Kitano, Oliver Schmitt, Felix Leßmann, Sebastian Schwanke, Peter Eipert, Meinhardt Jennifer, Julia Beier, Kanar Kadir, Adrian Karnitzki, Linda Sellner, Ann-Christin Klünker, Lena Kuch, Frauke Ruß, Jörg Jenssen, Andreas Wree, Paula Sanz‐Leon, S. A. Knock, Shih-Cheng Chien, Burkhard Maeß, Thomas R. Knösche, Charles C.H. Cohen, Marko Popović, Jan Klooster, Maarten H. P. Kole, Erik A. Roberts, Nancy Kopell, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Alex Koulakov, Caroline Garcia Forlim, Leonie Klock, Johanna Bächle, Laura Stoll, Patrick Giemsa, Marie Fuchs, Nikola Schoofs, Christiane Montag, Jürgen Gallinat, Ray X. Lee, Greg Stephens, Bernd Kühn, Luiz Tauffer, Philippe Isope, Katsuma Inoue, Yoshiyuki Ohmura, Shogo Yonekura, Yasuo Kuniyoshi, Hyun Jae Jang, Jeehyun Kwag, Marc de Kamps, Yi Ming Lai, Filipa Santos, K. P. Lam, Péter András, Julia P. Imperatore, Jessica Helms, Tamás Tompa, Antonieta Lavín, Felicity H Inkpen, Michael C. Ashby, Nathan F. Lepora, Aaron R. Shifman, John E. Lewis, Zhong Zhang, Yeqian Feng, Christian Tetzlaff, Tomas Kulvičius, Yinyun Li, Rodrigo F. O. Pena, Davide Bernardi, Antonio Roque, Benjamin Lindner, Sebastian Vellmer, Aušra Saudargienė, Tiina Maninen, Riikka Havela, Marja-Leena Linne, Arthur S. Powanwe, André Longtin, Jesús Garrido, Joe W. Graham, Salvador Dura‐Bernal, Sergio Angulo, Samuel A. Neymotin, Srdjan D. Antic
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12859-020-03830-w

CosinorPy: a python package for cosinor-based rhythmometry
Cited by: 31
Author(s): Miha Moškon
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pcbi.1009302

Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge
Cited by: 5
Author(s): Zhitao Xiong, Minji Jeon, Robert J. Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, Multi-Targeting Drug Dream Challenge Community, Kristen K. Dang, Alex Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross L. Cagan
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0128391

Optimizing the Protection of Cattle against Escherichia coli O157:H7 Colonization through Immunization with Different Combinations of H7 Flagellin, Tir, Intimin-531 or EspA
Cited by: 27
Author(s): Tom N. McNeilly, Mairi C. Mitchell, Alexander Corbishley, Mintu Nath, Hannah Simmonds, Sean P. McAteer, Aditya Mahajan, J. C. Low, David George Emslie Smith, John F. Huntley, David L. Gally
Software Mentions: 7
Published: about 11 years ago

10.18632/oncotarget.15993

Genome-wide DNA methylation analysis reveals molecular subtypes of pancreatic cancer
Cited by: 67
Author(s): Nitish K. Mishra, Chittibabu Guda
Software Mentions: 7
Published: over 9 years ago

10.1002/ece3.5617

Meta‐analyzing the likely cross‐species responses to climate change
Cited by: 10
Author(s): Jean C. G. Ortega, Nathalia Ingrid Gomes Machado, José Alexandre Felizola Diniz‐Filho, Thiago F. Rangel, Miguel B. Araújo, Rafael Loyola, Luis Maurício Bini
Software Mentions: 7
Published: almost 7 years ago

10.3389/fendo.2017.00145

Early Intranasal Vasopressin Administration Impairs Partner Preference in Adult Male Prairie Voles (Microtus ochrogaster)
Cited by: 11
Author(s): Trenton C. Simmons, Jessica F. Balland, Janeet Dhauna, Sang Yun Yang, Jason L. Traina, Jessica Vázquez, Karen L. Bales
Software Mentions: 7
Published: about 9 years ago

10.1128/mBio.00258-20

Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis
Cited by: 27
Author(s): John R. Erb-Downward, Nicole R. Falkowski, Jennifer D’Souza, Lisa McCloskey, Roderick A. McDonald, Christopher Brown, Kerby Shedden, Robert P. Dickson, Christine M. Freeman, Kathleen A. Stringer, Betsy Foxman, Gary B. Huffnagle, Jeffrey L. Curtis, Sara D. Adar
Software Mentions: 7
Published: almost 6 years ago

10.1128/mSystems.00063-20

Genomic Analysis of Bovine Staphylococcus aureus Isolates from Milk To Elucidate Diversity and Determine the Distributions of Antimicrobial and Virulence Genes and Their Association with Mastitis
Cited by: 31
Author(s): Sohail Naushad, Diego Nobrega, Syed Ali Raza Naqvi, Herman W. Barkema, Jeroen De Buck
Software Mentions: 7
Published: almost 6 years ago

10.3389/fnhum.2018.00472

The Role of Frontostriatal Systems in Instructed Reinforcement Learning: Evidence From Genetic and Experimentally-Induced Variation
Cited by: 2
Author(s): Nathan Tardiff, Kathryn N. Graves, Sharon L. Thompson-Schill
Software Mentions: 7
Published: over 7 years ago

10.1186/s12862-020-01681-w

Species delimitation in the cyanolichen genus Rostania
Cited by: 10
Author(s): Alica Košuthová, Johannes Bergsten, Martin Westberg, Mats Wedin
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12862-019-1533-x

Hooked on you: shape of attachment structures in cymothoid isopods reflects parasitic strategy
Cited by: 14
Author(s): Charles Baillie, Rachel L. Welicky, Kerry A. Hadfield, Stefano Mariani, Robin M. D. Beck
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.5111

Genetic population structure and demography of an apex predator, the tiger shark<i>Galeocerdo cuvier</i>
Cited by: 21
Author(s): Agathe Pirog, Sébastien Jaquemet, Virginie Ravigné, Geremy Cliff, Éric Clua, Bonnie J. Holmes, Nigel E. Hussey, John Nevill, Andrew J. Temple, Per Berggren, Laurent Vigliola, Hélène Magalon
Software Mentions: 7
Published: about 7 years ago

10.1186/s12859-016-1180-9

Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model
Cited by: 21
Author(s): Xiaoxiao Sun, David Dalpiaz, Di Wu, Jun S. Liu, Wenxuan Zhong, Ping Ma
Software Mentions: 7
Published: almost 10 years ago

10.3389/fpls.2019.01645

Early Responses of Brassica oleracea Roots to Zinc Supply Under Sufficient and Sub-Optimal Phosphorus Supply
Cited by: 15
Author(s): Paula Pongrac, Sina Fischer, Jacqueline Thompson, G. M. Wright, Philip J. White
Software Mentions: 7
Published: over 6 years ago

10.1186/s12859-018-2347-3

DM-PhyClus: a Bayesian phylogenetic algorithm for infectious disease transmission cluster inference
Cited by: 6
Author(s): Luc Villandré, Aurélie Labbe, Bluma G. Brenner, Michel Roger, David A. Stephens
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-020-72801-1

Severity assessment in mice subjected to carbon tetrachloride
Cited by: 13
Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: almost 6 years ago

10.1016/j.erss.2020.101704

Grounded reality meets machine learning: A deep-narrative analysis framework for energy policy research
Cited by: 20
Author(s): Ramit Debnath, Sarah Darby, Ronita Bardhan, Kamiar Mohaddes, Minna Sunikka-Blank
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2018.01604

Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs
Cited by: 18
Author(s): Sara C. Bell, SM Garland, Ross A. Alford
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
Cited by: 10
Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40246-016-0063-5

Human genome meeting 2016
Cited by: 10
Author(s): Arpita Srivastava, Y. Wang, Raymond Y. Huang, Chris J. Skinner, Tommy G. Thompson, Lucille Addison Pollard, Teresa L. Wood, Feng Luo, Robert B. Stevenson, Renato Polimanti, Joel Gelernter, Xin-Ying Lin, I. Y. Lim, Yi-Chieh Wu, Ai Ling Teh, L. Chen, I. M. Aris, Soo-Youn Soh, Mya Thway Tint, Julia L. MacIsaac, Fui W Yap, Kenneth Kwek, S. M. Saw, Michael S. Kobor, Michael J. Meaney, Keith M. Godfrey, Yap Seng Chong, Joanna D. Holbrook, Y. S. Lee, P. D. Gluckman, Neerja Karnani, Ashish Kapoor, D. Lee, Aravinda Chakravarti, Christian Maercker, Fritz Graf, Michael Boutros, Georgios Stamoulis, Fabio Santoni, Periklis Makrythanasis, Audrey Letourneau, Michel Guipponi, Nikolaos Panousis, Marco Garieri, Pascale Ribaux, Emilie Falconnet, Christelle Borel, Stylianos E. Antonarakis, Sonia Kumar, Joanne E. Curran, John Blangero, Samit Chatterjee, Jennifer A. Akiyama, Dallas R. Auer, Courtney Berrios, L Pennacchio, Tarak Donti, Gerarda Cappuccio, Marcus J. Miller, Paldeep S. Atwal, A. L. Kennedy, Aaron L. Cardon, Carlos A. Bacino, Lisa Emrick, Jozef Hertecant, F Bäumer, Brenda E. Porter, Matthew N. Bainbridge, Penelope E. Bonnen, Brett H. Graham, Reid Sutton, Qin Sun, Sarah H. Elsea, Zhi-Liang Hu, P. Wang, Yun Zhu, Jinying Zhao, Momiao Xiong, David A. Bennett, Alfredo Hidalgo‐Miranda, Sandra Romero-Córdoba, Sergio Rodrı́guez-Cuevas, Rosa Rebollar-Vega, Elena Tagliabue, Maria Iorio, Elvira D’Ippolito, Stefano Baroni, Bogumił Kaczkowski, Yoïchi Tanaka, Hideya Kawaji, Albin Sandelin, Robin Andersson, Masumi Itoh, Timo Lassmann, Yoshihide Hayashizaki, Piero Carninci, Alistair R.R. Forrest, Colin A. Semple, Elisabeth Rosenthal, Brian H. Shirts, Laura M. Amendola, Cecilia Gracia Gallego, Martha Horike‐Pyne, Amber Burt, Peggy D. Robertson, P. Beyers, Chris Nefcy, DL Veenstra, Fuki M. Hisama, Robin L. Bennett, Michael O. Dorschner, Deborah A. Nickerson, Joseph D. Smith, Karynne Patterson, David R. Crosslin, Rami Nassir, N. Zubair, Tom Harrison, Ulrike Peters, Gail P. Jarvik, Francesca Menghi, Koichiro Inaki, Xingyi Woo, Prerna Kumar, Krzysztof R. Grzęda, Ankit Malhotra, H. Kim, Duygu Ucar, Phung Trang Shreckengast, Krishna Karuturi, James Keck, James Chuang, E. T. Liu, Boyang Ji, Alioto Tyler, Guruprasad Ananda, G. Carter, Hamid Nikbakht, Martin Montagne, Michele Zeinieh, A. Harutyunyan, Melissa K. McConechy, Nada Jabado, Pierre Lavigne, Jacek Majewski, Jennifer B. Goldstein, Michael J. Overman, Gauri Varadhachary, Rachna T. Shroff, Robert A. Wolff, M. M. Javle, Andy Futreal, D. Fogelman, Leny Bravo, Williams Fajardo, Humberto Serna Gómez, Carlos Castañeda, Christian Rolfo, Joseph A. Pinto, Kadir C. Akdemir, Lynda Chin, Shanna Patterson, Cara Statz, Susan M. Mockus, S. N. Nikolaev, Ximena Bonilla, Laurent Parmentier, Bryan King, Fedor Bezrukov, Gulhan Kaya, Vincent Zoete, Vladimir B. Seplyarskiy, Heather Sharpe, Thomas W. McKee, Konstantin Popadin, Nicole Basset-Séguin, Rouaa Ben Chaabene, M. E. Andrianova, C Verdan, K. Grosdemange, Olga Sumara, Martin Eilers, Iannis Aifantis, Olivier Michielin, FJ de Sauvage, Stylianos E. Antonarakis, Somsak Likhitrattanapisal, Stephen E. Lincoln, Allison W. Kurian, Andrea Desmond, Shihui Yang, Yukio Kobayashi, James M. Ford, Leif W. Ellisen, Ted Peters, Karine Alvarez, Emporia Faith Hollingsworth, Dolores López‐Terrada, Alex Hastie, Željko Džakula, Andy Wing Chun Pang, Elaine T. Lam, Thomas Anantharaman, Michael Saghbini, Hua Cao, BioNano Genomics, Claudia Gonzaga‐Jauregui, Lijia Ma, Alejandra King, Erika B. Rosenzweig, U. B. Krishnan, Jeffrey G. Reid, J. D. Overton, Frederick E. Dewey, Woo-Keun Chung, Kathy M. Small, Adam P. DeLuca, Frans P.M. Cremers, Richard A. Lewis, V. Puech, Benjamin Bakall, R. Silva-Garcia, Klaus Rohrschneider, Marie Leys, Fadi Shaya, Edwin M Stone, Nara Sobreira, François Schiettecatte, Hong‐Qing Ling, Eric Pugh, David R. Witmer, Kyle M. Hetrick, P. Zhang, Kimberly F. Doheny, David Valle, Ada Hamosh, Shalini N. Jhangiani, Zeynep Coban Akdemir, Matthew N. Bainbridge, Wu‐Lin Charng, Wojciech Wiszniewski, Tomasz Gambin, Ender Karaca, Yavuz Bayram, Mohammad K. Eldomery, Jennifer E. Posey, Hv. Doddapaneni, Jingyuan Hu, V. Reid Sutton, Donna M. Muzny, Eric Boerwinkle, James R. Lupski, Richard A. Gibbs, Sandhya Shekar, William Salerno, Adam C. English, Adina Mangubat, Jeremy Bruestle, Adrian Thorogood, Bartha Maria Knoppers, Global Alliance for Genomics, Hazuki Takahashi, Kazuhiro R. Nitta, A. Kozhuharova, Ana Maria Suzuki, Hemant Sharma, Diego Cotella, Claudia Santoro, S. Zucchelli, Stefano Gustincich, J. J. Mulvihill, Gareth Baynam, W. A. Gahl, Stephen C. Groft, Kenjiro Kosaki, Paul Lasko, Béla Melegh, Domenica Taruscio, Rajarshi Ghosh, Sharon E. Plon, Steven E. Scherer, Xiang Qin, Rashesh Sanghvi, Kimberly Walker, Tsoyu Chiang, Donna M. Muzny, L. Wang, John L. Black, Eric Boerwinkle, Richard M. Weinshilboum, R.A. Gibbs, Tatiana V. Karpinets, Tiffany L. Calderone, Khalida Wani, Xiaoxing Yu, Caitlin Creasy, Cara L. Haymaker, Marie-Andrée Forget, Vashisht Gopal Yennu Nanda, Jason Roszik, Jennifer A. Wargo, Lauren E. Haydu, Xiaofei Song, Alexander J. Lazar, Jeffrey E. Gershenwald, M. A. Davies, Chantale Bernatchez, J. Zhang, Simon Woodman, Elissa J. Chesler, Todd B. Reynolds, Jason A Bubier, C M D Wendell Phillips, Michael A. Langston, Erich J. Baker, Nancy U. Lin, Christopher I. Amos, Vince D. Calhoun, Otto Dobretsberger, M. Egger, F. Leimgruber, Simon Sadedin, Alicia Oshlack, Victor Andrew A. Antonio, Noriaki Ono, Clark Kendrick Go, Zaheer Ahmed, Mohan Bolisetty, Saman Zeeshan, Esther Aguirre Anguiano, Abhishek Sarkar, Madhusudan R. Nandineni, Chao Zeng, Jie Shao, Tianzhu Liang, Kevin Pham, Y. Chee-Wei, Dongsheng Li, W. Lai-Ping, Duan Lian, Rick Ong Twee Hee, Yuzaimi Yunus, Farhang Aghakhanian, Siti Shuhada Mokhtar, C. V. Lok-Yung, Jong Bhak, Matthew Phipps, Xu Shuhua, T. Yik-Ying, Vinod Kumar, Hoh BoonPeng, Ian Campbell, Mary‐Anne Young, Pettengill James, Lifepool, Manjari Rain, Ghulam Mohammad, Ritushree Kukreti, Qadar Pasha, Ainur Akilzhanova, C. Guelly, Zhannur Abilova, Saule Rakhimova, Ainur Akhmetova, Ulykbek Kairov, Slave Trajanoski, Zhaxybay Zhumadilov, Makhabbat Bekbossynova, Cassie A. Schumacher, Sardul Singh Sandhu, Timothy T. Harkins, Vladimir Makarov, Robert Glenn, Zeineen Momin, B. Dilrukshi, Hsiao Tuan Chao, Qingchang Meng, Brent M. Gudenkauf, R. Kshitij, Joy C. Jayaseelan, Caitlin Nessner, S. Lee, K. Blankenberg, Lora Lewis, Yi Han, Huyen Dinh, S. Jireh, Christian Buhay, X. Liu, Q. Wang, Yao Ding, Narayanan Veeraraghavan, Ya Ping Yang, Arthur L. Beaudet, Christine M. Eng, Kim C. Worley, Y. Liu, Daniel Hughes, Shwetha C. Murali, R. Alan Harris, Adam C. English, Oliver A. Hampton, Peter A. Larsen, Christine R. Beck, M. Wang, Christie Kovar, William Salerno, Anne D. Yoder, Stephen M. Richards, Jeffrey Rogers, M. Raveenedran, Chenghai Xue, Mahmoud Dahdouli, Linda J. Cox, Guangyi Fan, Betsy Ferguson, J. Hovarth, Zachary P. Johnson, Sree Kanthaswamy, M. Kubisch, Martin Ward Platt, Daniel G. Smith, Eric J. Vallender, Roger W. Wiseman, Jennifer E. Below, Fuli Yu, Jaime Lin, Y. Zhang, Zhengqing Ouyang, Andrew Moore, Z. Wang, Johannes Hofmann, Purdue Mp, Rachael Z. Stolzenberg‐Solomon, Shelsey J. Weinstein, Demetrius Albanês, C. S. Liu, Wei‐Yi Cheng, Timothy Lin, Qiong Lan, Nathaniel Rothman, SI Berndt, E. S. Chen, Hoda Bahrami, A. Khoshzaban, S. Heidari Keshal, K. K. R. Alharbi, M. Zhalbinova, Ainur Akilzhanova, Mahabbat Bekbosynova, Ш.К. Мырзахметова, Maher Matar, N. Mili, Robert J. Molinari, Yussanne Ma, Stéphane Guerrier, Nasser A. Elhawary, Mohammed T. Tayeb, Neda M. Bogari, N. Qotb, Sarah A. McClymont, Paul W. Hook, Loyal A. Goff, Andrew S. McCallion, Yong Kong, Jacob Charette, Wanda L. Hicks, Jürgen Κ. Naggert, Lue Ping Zhao, Patsy M. Nishina, Burhan Edrees, Mohammad Athar, Faisal A. Al‐Allaf, Mohiuddin M. Taher, Wahab Khan, Abdellatif Bouazzaoui, N. A. Harbi, R. Safar, H. Al-Edressi, Abeer Abdullah Al Anazi, N. Altayeb, Muhammad Ahmed, K. Alansary, Zainularifeen Abduljaleel, Anton Kratz, Pascal Béguin, Stéphane Poulain, Makoto Kaneko, C. Takahiko, Atsuko Matsunaga, Sachi Kato, Nicolas Bertin, Réjan Vigot, Charles Plessy, Thomas Lavstsen, Dan Graur, Jens Friis-Nielsen, Jose M. G. Izarzugaza, Søren Brunak, Anurupa Chakraborty, Jolly Basak, and Rajendrani Mukhopadhyay, Benjamin Soibam, Dhritishree Das, Nupur Biswas, Das S, Sinjini Sarkar, Anirban Maitra, Chandan Kumar Panda, Prasenjit Majumder, Heba Morsy, Ahmed Mohammed Gaballah, M Parikh Samir, M. Shamseya, Hisham Mahrous, Ayesha Ghazal, Waleed Arafat, M. Hashish, Joshua J. Gruber, Natalie Jaeger, Matthew Snyder, Kashyap Patel, Shannon Bowman, Trisha N. Davis, D Kraushaar, Amy B. Emerman, Salvatore Russello, Noa Henig, Cynthia L. Hendrickson, K. Zhang, Mauricio Rodríguez-Dorantes, C. D. Cruz-Hernandez, C. D. P. Garcia-Tobilla, S. Solorzano-Rosales, Natalie Jäger, J. Chen, Robert W. Haile, Megan P. Hitchins, Julia Brooks, Silvia Jiménez-Morales, Mónica Morales Ramírez, Javier Martín‐Núñez, Valerie Bekker, Yriana Rodrigues Leal, Esteban Jiménez, Aída Carolina Medina, Alfredo Hidalgo, Jorge Mejía, V. Halytskiy, Jürgen Κ. Naggert, Gayle B. Collin, K. DeMauro, R. Hanusek, K. Belhassa, Khadija Belhassan, Laila Bouguenouch, I. Samri, H. Sayel, Fz. moufid, I. El Bouchikhi, S. Trhanint, H. Hamdaoui, I. Elotmani, I. Khtiri, O. Kettani, L. Quibibo, M. Ahagoud, Mohammed Abdou Abbassi, Karim Ouldim, А. В. Марусин, А. Н. Корнетов, M. G. Swarovskaya, K. Vagaiceva, Vadim Stepanov, Eva Maria Cutiongco de la Paz, Rody G. Sy, Julián Nevado, Paul Ferdinand M. Reganit, L. C. S. dos Santos, Jose Donato A. Magno, Felix Eduardo R. Punzalan, Deborah Ignacia D. Ona, Erasmo Gonzalo D.V. Llanes, R. L. Santos-Cortes, Raphael Enrique Tiongco, Jaime Alfonso M. Aherrera, Lauro L. Abrahan, P. Pagauitan-Alan, Kathryn H. Morelli, J. S. Domire, Nibedita Pyne, Shirley F. Harper, Ralph Royal Burgess, Mamdooh Gari, Ashraf Dallol, Haneen Alsehli, Abdullah Gari, Mamdooh Gari, A. A. Abuzenadah, M. G. Thomas, Mahadeo A. Sukhai, Shruti Garg, Maksym Misyura, T. Zhang, Anna Schuh, Tracy Stockley, Suzanne Kamel‐Reid, Stephen T. Sherry, Chunlin Xiao, Douglas J. Slotta, Kurt Rodarmer, Michael Feolo, Michael Kimelman, Georgy Godynskiy, Christopher D. O’Sullivan, Eugene Yaschenko, Claudia Rangel‐Escareño, H. Rueda-Zarate, Iftikhar Aslam Tayubi, Reema R Mohammed, Iqbal Ike K. Ahmed, Tamar Ahmed, Sahil Seth, Samirkumar B. Amin, Xinjie Mao, Hui Sun, Roeland Verhaak, S. J. Whiite, Jesse Farek, Z. Kahn, Takeya Kasukawa, Marina Lizio, Jayson Harshbarger, S. Hisashi, Jessica Severin, A. Imad, Sedef Şahin, Thomas Charles Augustus Freeman, Katherine Unger Baillie, Sandhya Shekar, Abbes Salem, Mecheala Abbas Ali, Ahmed Ibrahim, M. Sofi Ibrahim, H Barrera, Lourdes Garza, Julian Torres, V. Barajas, Alfredo Ulloa‐Aguirre, David Kershenobich, Shahroj Mortaji, Pedro Guizar, Eliezer Loera, Karen Moreno, Adriana De León, Daniela Monsiváis, Jackeline Gómez, Raquel Cardiel, Jesús Carlos Fernández-López, V. Bonifaz-Peña, Andrew Contreras, Linda M. Polfus, X. Wang, Vivek Philip, A. A. Abuzenadah, Rola Turki, Asli Uyar, A. Kaygun, Sayed Zaman, E. García de Castro Márquez, Josna George, Cynthia L. Hendrickson, Dakota Starr, Mark E. Baird, Brian Kirkpatrick, Kent J. Sheets, Rainer Nitsche, L. Prieto-Lafuente, Melissa Landrum, J. Lee, Wendy S. Rubinstein, Donna Maglott, P. K. R. Thavanati, A. Escoto de Dios, Rolando Hernandez, M. E. Aguilar Aldrate, Mirna Mejia, K. R. R. Kanala, Neelum Shahzad, Elisabeth Huber, Alice J. Dan, Wolfgang Herr, G. Sprotte, Josef Köstler, Andreas Hiergeist, AE Gessner, Reinhard Andreesen, Elmar Holler, Faisal A. Al‐Allaf, Abdullah A. Al-Ashwal, Mohiuddin M. Taher, Halah Abalkhail, Ahmad F. Al-Allaf, R. Bamardadh, Olga Filiptsova, M. M. Kobets, Yu. M. Kobets, Ievgeniia Burlaka, I. Timoshyna, M. M. Kobets, Muhammad Mohiuddin, A. Zainularifeen, Alfaqih Samar Mohammed, Tarek Owaidah
Software Mentions: 7
Published: about 10 years ago

10.1186/1471-2164-13-683

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing
Cited by: 24
Author(s): Enrique Ramos, Benjamin T. Levinson, Sara E. Chasnoff, Andrew Hughes, Andrew L. Young, Katherine A. Thornton, Allie Li, Francesco Vallania, Michael Province, Todd E. Druley
Software Mentions: 7
Published: over 13 years ago

10.1038/s41598-021-94343-w

Gene expression analysis method integration and co-expression module detection applied to rare glucide metabolism disorders using ExpHunterSuite
Cited by: 7
Author(s): Fernando M. Jabato, José Córdoba-Caballero, Elena Rojano, Carlos Romá‐Mateo, Pascual Sanz, Belén Pérez, Diana Gallego, Pedro Seoane, Juan A. G. Ranea, James R. Perkins
Software Mentions: 7
Published: almost 5 years ago

10.7150/thno.54134

Single-cell melanoma transcriptomes depicting functional versatility and clinical implications of STIM1 in the tumor microenvironment
Cited by: 2
Author(s): Henry Sung Ching Wong, Wei Chiao Chang
Software Mentions: 7
Published: over 5 years ago

10.21203/rs.3.rs-131380/v2

Age-dependent pathogenic characteristics of SARS-CoV-2 infection in ferrets
Cited by: 3
Author(s): Young Il Kim, Kwang-Min Yu, June-Young Koh, Eunha Kim, Se‐Mi Kim, Young Ho Kim, Mark Anthony B. Casel, Rare Rollon, Seung-Gyu Jang, Min‐Suk Song, Su‐Jin Park, Hye Won Jeong, Eung‐Gook Kim, Ok-Jun Lee, Younho Choi, Shin-Ae Lee, Su–Hyung Park, Jae U. Jung, Young Ki Choi
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pbio.3001390

Identifying and prioritizing potential human-infecting viruses from their genome sequences
Cited by: 43
Author(s): Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2021.631889

DWV Infection in vitro Using Honey Bee Pupal Tissue
Cited by: 3
Author(s): Yunfei Wu, Xuye Yuan, Jing Li, Tatsuhiko Kadowaki
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2020.01330

Frog Skin Microbiota Vary With Host Species and Environment but Not Chytrid Infection
Cited by: 11
Author(s): Ariel Kruger
Software Mentions: 7
Published: about 6 years ago

10.3389/fninf.2018.00016

Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format
Cited by: 14
Author(s): Svenn-Arne Dragly, Milad Hobbi Mobarhan, Mikkel Elle Lepperød, Simen Tennøe, Marianne Fyhn, Torkel Hafting, Anders Malthe‐Sørenssen
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-020-77578-x

Empty mesoporous silica particles significantly delay disease progression and extend survival in a mouse model of ALS
Cited by: 7
Author(s): Marcel F. Leyton-Jaimes, Patrik Ivert, Jan Hoeber, Yilin Han, Adam Feiler, Chunfang Zhou, Stanislava Pankratova, Varda Shoshan‐Barmatz, Adrian Israelson, Elena N. Kozlova
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-79296-w

Insights into gene expression changes under conditions that facilitate horizontal gene transfer (mating) of a model archaeon
Cited by: 6
Author(s): Andrea M. Makkay, Artemis S. Louyakis, Nikhil Ram-Mohan, Uri Gophna, J. Peter Gogarten, R. Thane Papke
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0219302

Artificial intelligence algorithm for predicting mortality of patients with acute heart failure
Cited by: 74
Author(s): Joon Kwon, Kyung Hee Kim, Ki‐Hyun Jeon, Sang Eun Lee, Hae Young Lee, Hyun Jai Cho, Jin Oh Choi, Eun Seok Jeon, Min Seok Kim, Jae Joong Kim, Kyung Kuk Hwang, Shung Chull Chae, Sang Hong Baek, Seok Min Kang, Dong Ju Choi, Byung Su Yoo, Kye Hun Kim, Hyun-Young Park, Myeong Chan Cho, Byung Hee Oh
Software Mentions: 7
Published: almost 7 years ago

10.1186/s13062-016-0110-0

Altools: a user friendly NGS data analyser
Cited by: 5
Author(s): Salvatore Camiolo, Gaurav Sablok, Andrea Porceddu
Software Mentions: 7
Published: over 10 years ago

10.3389/fgene.2021.722981

Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data
Cited by: 6
Author(s): Jing Li, Urminder Singh, Zebulun Arendsee, Eve Syrkin Wurtele
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2021.639642

Immune-Related Genes Are Prognostic Markers for Prostate Cancer Recurrence
Cited by: 10
Author(s): Min Fu, Qiang Wang, Hanbo Wang, Ying Dai, Jin Wang, Weiting Kang, Zilian Cui, Xunbo Jin
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-64110-4

The Intersection between Spliff Usage, Tobacco Smoking, and Having the First Joint after Waking
Cited by: 0
Author(s): Navin Kumar, Cheneal Puljević, Jason Ferris, Adam Winstock, Monica J. Barratt
Software Mentions: 7
Published: about 6 years ago

10.1016/j.isci.2021.102870

Single paternal dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance
Cited by: 14
Author(s): Katharina Gapp, Guillermo E. Parada, Fridolin Groß, Alberto Corcoba, Jasmine Kaur, Evelyn Grau, Martin Hemberg, Johannes Bohacek, Eric A. Miska
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0217708

Nest characteristics determine nest microclimate and affect breeding output in an Antarctic seabird, the Wilson’s storm-petrel
Cited by: 13
Author(s): Rosanne J. Michielsen, Anne N. M. A. Ausems, Dariusz Jakubas, Michał Pętlicki, Joanna Plenzler, Judy Shamoun‐Baranes, Katarzyna Wojczulanis‐Jakubas
Software Mentions: 7
Published: about 7 years ago

10.1186/s12870-016-0754-z

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: over 10 years ago

10.3389/pore.2021.1609825

Clinical Value of TXNDC12 Combined With IDH and 1p19q as Biomarkers for Prognosis of Glioma
Cited by: 4
Author(s): Xinzhuang Wang, Quan Yang, Nan Liu, Qilong Bian, Ming Gao, Xu Hou
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40425-018-0326-x

Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Cited by: 67
Author(s): Keith Steele, Tze Heng Tan, R Korn, Karma Dacosta, Charles O. Brown, Michael Kuziora, Johannes Zimmermann, Brian Laffin, Moritz Widmaier, Lorenz Rognoni, Rubén Cárdenes, Katrin Schneider, Anmarie Boutrin, Philip Martin, Jiping Zha, Tobias Wiestler
Software Mentions: 7
Published: over 8 years ago

10.1186/s13148-021-01145-y

Childhood-onset dystonia-causing KMT2B variants result in a distinctive genomic hypermethylation profile
Cited by: 17
Author(s): Andrea Ciolfi, Aidin Foroutan, Alessandro Capuano, Lucia Pedace, Lorena Travaglini, Simone Pizzi, Marco Andreani, Evelina Miele, Federica Invernizzi, Chiara Reale, Celeste Panteghini, Maria Iascone, Marcello Niceta, Ralitza H. Gavrilova, Laura Schultz‐Rogers, Emanuele Agolini, Maria Francesca Bedeschi, Paolo Prontera, Matteo Garibaldi, Serena Galosi, Vincenzo Leuzzi, Paola Soliveri, Rory J. Olson, Giovanna Zorzi, Barbara Garavaglia, Marco Tartaglia, Bekim Sadiković
Software Mentions: 7
Published: almost 5 years ago

10.3390/foods6040031

Validation of a Novel Technique and Evaluation of the Surface Free Energy of Food
Cited by: 19
Author(s): Tugce Sentürk Parreidt, Markus Schmid, Carolin Hauser
Software Mentions: 7
Published: about 9 years ago

10.3389/fvets.2020.580523

The Influence of Predictability and Controllability on Stress Responses to the Aversive Component of a Virtual Fence
Cited by: 16
Author(s): Tellisa Kearton, Danila Marini, Frances Cowley, Sue Belson, Hamideh Keshavarzi, Bonnie T. Mayes, Lee C
Software Mentions: 7
Published: over 5 years ago

10.3389/fpsyg.2020.599094

Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: over 5 years ago

10.1093/bioinformatics/bty088

SecretSanta: flexible pipelines for functional secretome prediction
Cited by: 10
Author(s): Anna Gogleva, Hajk-Georg Drost, Sebastián Schornack
Software Mentions: 7
Published: over 8 years ago

10.3389/fvets.2020.00214

Cultural “Blind Spots,” Social Influence and the Welfare of Working Donkeys in Brick Kilns in Northern India
Cited by: 16
Author(s): Tamlin Watson, Laura M Kubasiewicz, Natasha Chamberlain, Caroline Nye, Zoe Raw, Faith Burden
Software Mentions: 7
Published: about 6 years ago

10.7554/eLife.59610

Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos
Cited by: 29
Author(s): Theodora Koromila, Fan Gao, Yohei Iwasaki, Peng He, Lior Pachter, J. Peter Gergen, Angelike Stathopoulos
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.673838

Construction of a Promising Tumor-Infiltrating CD8+ T Cells Gene Signature to Improve Prediction of the Prognosis and Immune Response of Uveal Melanoma
Cited by: 13
Author(s): Yifang Sun, Jian Wu, Yuchao Yuan, Yumin Lu, Ming Luo, Ling Lin, Shuping Ma
Software Mentions: 7
Published: about 5 years ago

10.1107/S2059798317007859

Recent developments in the<i>CCP-EM</i>software suite
Cited by: 266
Author(s): Tom Burnley, Colin M. Palmer, Martyn Winn
Software Mentions: 7
Published: about 9 years ago

10.15252/embj.2020105565

The RNA polymerase II subunit RPB‐9 recruits the integrator complex to terminate <i>Caenorhabditis elegans</i> piRNA transcription
Cited by: 13
Author(s): Ahmet C. Berkyurek, Giulia Furlan, Lisa Lampersberger, Toni Beltran, Eva-Maria Weick, Emily Nischwitz, Isabela Cunha Navarro, Fabian Braukmann, Alper Akay, Jonathan Price, Falk Butter, Peter Sarkies, Eric A. Miska
Software Mentions: 7
Published: over 5 years ago

10.1186/1471-2105-16-S13-S7

Enhancing cancer clonality analysis with integrative genomics
Cited by: 6
Author(s): Erich A. Peterson, Michael Bauer, Shweta S. Chavan, Cody Ashby, Niels Weinhold, Christoph Heuck, Gareth J. Morgan, Donald J. Johann
Software Mentions: 7
Published: over 10 years ago

10.7554/eLife.34031

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
Cited by: 39
Author(s): Amy E. Pohodich, Hari Krishna Yalamanchili, Ayush T. Raman, Ying-Wooi Wan, Michael C. Gundry, Shuang Hao, Haijing Jin, Jianrong Tang, Zhandong Liu, Huda Y. Zoghbi
Software Mentions: 7
Published: over 8 years ago

10.1186/s12935-020-01429-y

Establishment of the prognostic index of lung squamous cell carcinoma based on immunogenomic landscape analysis
Cited by: 11
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 7
Published: almost 6 years ago

10.1534/g3.116.034488

Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data
Cited by: 28
Author(s): Robert Kofler, Anna Maria Langmüller, Pierre Nouhaud, Kerstin Otte, Christian Schlötterer
Software Mentions: 7
Published: over 9 years ago

10.3389/fgene.2020.566579

Bioinformatics Analysis Discovers Microtubular Tubulin Beta 6 Class V (TUBB6) as a Potential Therapeutic Target in Glioblastoma
Cited by: 12
Author(s): Lan Jiang, Xiaolong Zhu, Hui Yang, Tianbing Chen, Kun Lv
Software Mentions: 7
Published: almost 6 years ago

10.1128/mSystems.00280-19

Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single <i>Ctena orbiculata</i> (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition
Cited by: 7
Author(s): Shen Jean Lim, Louie C. Alexander, Annette Summers Engel, Audrey Paterson, Laurie C. Anderson, Barbara J. Campbell
Software Mentions: 7
Published: almost 7 years ago

10.1186/1756-8935-8-6

De novo identification of differentially methylated regions in the human genome
Cited by: 639
Author(s): Timothy J. Peters, Michael Buckley, Aaron L. Statham, Ruth Pidsley, Katherine Samaras, Reginald V. Lord, Susan J. Clark, Peter L. Molloy
Software Mentions: 7
Published: over 11 years ago

10.3390/ijerph17155619

Investigating Connections between Need for Cognitive Closure and Climate Change Concern in College Students
Cited by: 6
Author(s): Margaret Orr, Alan E. Stewart, Andrew Grundstein
Software Mentions: 7
Published: almost 6 years ago

10.3390/ijerph18052207

Physical Activity Improves Mental Health in Children and Adolescents Irrespective of the Diagnosis of Attention Deficit Hyperactivity Disorder (ADHD)—A Multi-Wave Analysis Using Data from the KiGGS Study
Cited by: 9
Author(s): Parisa Ganjeh, Thomas Meyer, York Hagmayer, Ronny Kuhnert, Ulrike Ravens‐Sieberer, Nicole von Steinbüechel, Aribert Rothenberger, Andreas Becker
Software Mentions: 7
Published: over 5 years ago

10.1186/s13040-016-0099-z

SePIA: RNA and small RNA sequence processing, integration, and analysis
Cited by: 22
Author(s): Katherine Icay, Ping Chen, Alejandra Cervera, Ville Rantanen, Rainer Lehtonen, Sampsa Hautaniemi
Software Mentions: 7
Published: about 10 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: over 8 years ago

10.1038/s42003-021-02553-9

QSPcc reduces bottlenecks in computational model simulations
Cited by: 2
Author(s): Danilo Tomasoni, Alessio Paris, Stefano Giampiccolo, Federico Reali, Giulia Simoni, Luca Marchetti, Chanchala Kaddi, Susana Neves-Zaph, Corrado Priami, Karim Azer, Rosario Lombardo
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0240609

Digital support principles for sustained mathematics learning in disadvantaged students
Cited by: 3
Author(s): Frank Reinhold, Sarah Hofer, Stefan Hoch, Bernhard Werner, Jürgen Richter-Gebert, Kristina Reiss
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.8103

Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
Cited by: 33
Author(s): Davide Rassati, Lorenzo Marini, Antonino Malacrinò
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-63565-9

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Cited by: 36
Author(s): Bryan Nguyen, Elaine W. Shen, Janina Seemann, Adrienne M. S. Correa, James L. O’Donnell, Andrew H. Altieri, Nancy­ Knowlton­, Keith A. Crandall, Scott P. Egan, W. Owen McMillan, Matthieu Leray
Software Mentions: 7
Published: about 6 years ago

10.1186/1471-2164-15-452

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding
Cited by: 52
Author(s): Arun Kommadath, Hua Bao, Adriano S. Arantes, Graham Plastow, Christopher K. Tuggle, Shawn M. D. Bearson, Le Luo Guan, Paul Stothard
Software Mentions: 7
Published: about 12 years ago

10.1038/s41598-017-13397-x

The effect of insecticide synergist treatment on genome-wide gene expression in a polyphagous pest
Cited by: 28
Author(s): Simon Snoeck, Robert Greenhalgh, Luc Tirry, Richard M. Clark, Thomas Van Leeuwen, Wannes Dermauw
Software Mentions: 7
Published: over 8 years ago

10.1186/1471-2229-13-213

Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17
Cited by: 12
Author(s): Claude Urbany, Andreas Benke, Johanna Marsian, Bruno Huettel, Richard Reinhardt, Benjamin Stich
Software Mentions: 7
Published: over 12 years ago

10.1038/s42003-021-01897-6

Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer
Cited by: 9
Author(s): Giorgia Maroni, Mahmoud A. Bassal, Indira Krishnan, Chee Wai Fhu, Virginia Savova, Rapolas Žilionis, Valerie A. Maymi, Nicole Pandell, Eva Csizmadia, Junyan Zhang, Barbara Storti, Julio Castaño, Riccardo Panella, Jia Li, Corinne E. Gustafson, Sam Fox, Rachel Levy, Claire Meyerovitz, Peter J. Tramontozzi, Kimberly Vermilya, Assunta De Rienzo, Stefania Crucitta, Daniela S. Bassères, Marla Weetall, Art Branstrom, Alessandra Giorgetti, Raffaele Ciampi, Marzia Del Re, Romano Danesi, Ranieri Bizzarri, Henry Yang, Olivier Kocher, Allon M. Klein, Robert S. Welner, Raphael Bueno, Maria Cristina Magli, John G. Clohessy, Azhar Ali, Daniel G. Tenen, Elena Levantini
Software Mentions: 7
Published: about 5 years ago

10.3390/cells10071576

Transcriptomic Profiling of Femoral Veins in Deep Vein Thrombosis in a Porcine Model
Cited by: 7
Author(s): Leszek Gromadziński, Łukasz Paukszto, Agnieszka Skowrońska, Piotr Holak, Michał Smoliński, Elżbieta Łopieńska–Biernat, Ewa Lepiarczyk, Aleksandra Lipka, J Jastrzebski, Marta Majewska
Software Mentions: 7
Published: about 5 years ago

10.1111/eva.12922

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish
Cited by: 30
Author(s): Kara K S Layton, Brian Dempson, Paul V. R. Snelgrove, Steven J. Duffy, Amber Messmer, Ian G. Paterson, Nicholas W. Jeffery, Tony Kess, John B. Horne, Sarah J. Salisbury, Daniel E. Ruzzante, Paul Bentzen, David Côté, Cameron M. Nugent, Moira M. Ferguson, Jong S. Leong, Ben F. Koop, Ian Bradbury
Software Mentions: 7
Published: over 6 years ago

10.1186/s13321-015-0086-2

Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules
Cited by: 36
Author(s): Daniel S. Murrell, Isidro Cortés-Ciriano, Gerard J. P. van Westen, Ian P. Stott, Andreas Bender, Thérèse E. Malliavin, Robert C. Glen
Software Mentions: 7
Published: almost 11 years ago

10.1186/s13059-021-02450-8

INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants
Cited by: 3
Author(s): Chenyang Dong, Shane P. Simonett, Sun‐Young Shin, Donnie S. Stapleton, Kathryn L. Schueler, Gary A. Churchill, Leina Lu, Huan Liu, Fulai Jin, Yan Li, Alan D. Attie, Mark P. Keller, Sündüz Keleş
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pgen.1007784

Maternal and zygotic gene regulatory effects of endogenous RNAi pathways
Cited by: 17
Author(s): Miguel Vasconcelos Almeida, António Miguel de Jesus Domingues, René F. Ketting
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.8289

Substrate rugosity and temperature matters: patterns of benthic diversity at tropical intertidal reefs in the SW Atlantic
Cited by: 14
Author(s): Ana Carolina de Azevedo Mazzuco, Patricia Sarcinelli Stelzer, Ângelo F. Bernardino
Software Mentions: 7
Published: over 6 years ago

10.3390/insects9040174

Drifting Phenologies Cause Reduced Seasonality of Butterflies in Response to Increasing Temperatures
Cited by: 5
Author(s): Zachariah J. Gezon, Rebekah J. Lindborg, Anne Savage, Jaret C. Daniels
Software Mentions: 7
Published: over 7 years ago

10.1038/sdata.2018.21

Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich’s ataxia patients
Cited by: 22
Author(s): Marta Seco-Cervera, Daymé González-Rodríguez, José Santiago Ibáñez-Cabellos, Lorena Peiró-Chova, Federico V. Pallardó, José Luis García-Giménez
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-021-87577-1

Cetacean distribution models based on visual and passive acoustic data
Cited by: 11
Author(s): Kaitlin E. Frasier, Lance P. Garrison, Melissa S. Soldevilla, Sean M. Wiggins, John A. Hildebrand
Software Mentions: 7
Published: about 5 years ago