Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-018-26592-1

https://doi.org/10.1038/s41598-018-26592-1

Cited by: 13
Author(s): Radek Šindelka, Pavel Abaffy, Yanyan Qu, Silvie Tománková, Monika Šídová, Ravindra Naraine, Michal Kolář, Elizabeth H. Peuchen, Liangliang Sun, Norman J. Dovic̀hi, Mikael Kubista
Published: almost 6 years ago

Software Mentions 7

bioconductor: Biostrings

Efficient manipulation of biological strings
Papers that mentioned: 220

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: kmer

Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Papers that mentioned: 240

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: naga

A powerful Haskell/Clojure-inspired Python-hybrid-monster!
Papers that mentioned: 1

pypi: out

Fun take on logging for non-huge projects. Gets "outta" the way.
Papers that mentioned: 7

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190