An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1038/s41597-019-0095-5

https://doi.org/10.1038/s41597-019-0095-5

Multi omics analysis of fibrotic kidneys in two mouse models

Cited by: 25
Author(s): Mira Pavkovic, Lorena Pantano, Cory V. Gerlach, Sergine Brutus, Sarah A. Boswell, Robert A. Everley, Jagesh V. Shah, Shannan Ho Sui, Vishal S. Vaidya
Published: about 6 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: atropos
trim adapters from high-throughput sequencing reads
Papers that mentioned: 5
Very Likely Science (65)
pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
Very Likely Science (100)
pypi: seqcluster
Small RNA-seq pipeline
Papers that mentioned: 4
Very Likely Science (100)