Projects: pypi: seqcluster
https://packages.ecosyste.ms/registries/pypi.org/packages/seqcluster
Small RNA-seq pipeline
39 versions
Latest release: almost 2 years ago
26 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Lorena Pantano (user)
PhD in miRNA analysis in mental disease @ CRG, Barcelona, Spain. Experience in NGS data analysis. Love python, R, and data integration. twitter:@lopantano
PhD in miRNA analysis in mental disease @ CRG, Barcelona, Spain. Experience in NGS data analysis. Love python, R, and data integration. twitter:@lopantano
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+12
Science terms in README
6 scientific terms found in README -
+30
DOI references
3 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning seqcluster 4
10.1038/s41597-019-0095-5
Multi omics analysis of fibrotic kidneys in two mouse modelsCited by: 25
Author(s): Mira Pavkovic, Lorena Pantano, Cory V. Gerlach, Sergine Brutus, Sarah A. Boswell, Robert A. Everley, Jagesh V. Shah, Shannan Ho Sui, Vishal S. Vaidya
Software Mentions: 7
Published: about 6 years ago
10.3389/fnmol.2019.00236
Sex-Dependent Changes in miRNA Expression in the Bed Nucleus of the Stria Terminalis Following StressCited by: 16
Author(s): Maria Mavrikaki, Lorena Pantano, David N. Potter, Maximilian Rogers-Grazado, Eleni Anastasiadou, Frank J. Slack, Sami S. Amr, Kerry J. Ressler, Nikolaos P. Daskalakis, Elena H. Chartoff
Software Mentions: 5
Published: almost 6 years ago
10.12688/f1000research.18142.2
Visualization of the small RNA transcriptome using seqclusterVizCited by: 6
Author(s): Lorena Pantano, Francisco Pantano, Eulàlia Martı́, Shannan Ho Sui
Software Mentions: 3
Published: about 6 years ago
10.1111/age.12992
Identification and characterization of miRNAs during early pregnancy in domestic sheepCited by: 6
Author(s): Kisun Pokharel, Jaana Peippo, Menghua Li, Juha Kantanen
Software Mentions: 2
Published: almost 5 years ago