Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fnmol.2019.00236

https://doi.org/10.3389/fnmol.2019.00236

Sex-Dependent Changes in miRNA Expression in the Bed Nucleus of the Stria Terminalis Following Stress

Cited by: 16
Author(s): Maria Mavrikaki, Lorena Pantano, David N. Potter, Maximilian Rogers-Grazado, Eleni Anastasiadou, Frank J. Slack, Sami S. Amr, Kerry J. Ressler, Nikolaos P. Daskalakis, Elena H. Chartoff
Published: about 5 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: seqcluster
Small RNA-seq pipeline
Papers that mentioned: 4