10.3389/fcell.2021.668810

Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma
Cited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2019.02621

Influence of Various Processing Parameters on the Microbial Community Dynamics, Metabolomic Profiles, and Cup Quality During Wet Coffee Processing
Cited by: 31
Author(s): Sophia Jiyuan Zhang, Florac De Bruyn, Vasileios Pothakos, Gonzalo F Contreras, Z. Y. Cai, Cyril Moccand, Stefan Weckx, Luc De Vuyst
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.68265

Spectral signature and behavioral consequence of spontaneous shifts of pupil-linked arousal in human
Cited by: 21
Author(s): Ella Podvalny, Leana E King, Biyu J. He
Software Mentions: 7
Published: almost 5 years ago

10.3390/genes11020226

Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1
Cited by: 10
Author(s): Jineta Banerjee, Robert J. Allaway, Jaclyn N. Taroni, Aaron Baker, Xiaochun Zhang, Chang In Moon, Christine A. Pratilas, Jaishri O. Blakeley, Justin Guinney, Angela C. Hirbe, Casey S. Greene
Software Mentions: 7
Published: over 6 years ago

10.1186/s12859-020-03945-0

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes
Cited by: 1
Author(s): Bing Song, August E. Woerner, John V. Planz
Software Mentions: 7
Published: over 5 years ago

10.1186/s13073-019-0695-x

FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures
Cited by: 7
Author(s): Hyunbin Kim, Andy Jinseok Lee, Jongkeun Lee, Hyonho Chun, Young Seok Ju, Dong Ho Hong
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2019.02359

Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)
Cited by: 21
Author(s): Perrine Cruaud, Adrien Vigneron, Marie‐Stéphanie Fradette, Caetano C. Dorea, Alexander I. Culley, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.1393

First description of underwater acoustic diversity in three temperate ponds
Cited by: 44
Author(s): Camille Desjonquères, Fanny Rybak, Marion Depraetere, Amandine Gasc, Isabelle Le Viol, Sandrine Pavoine, Jérôme Sueur
Software Mentions: 7
Published: over 10 years ago

10.1186/s12870-016-0754-z

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: over 10 years ago

10.1186/s12862-019-1510-4

Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps
Cited by: 26
Author(s): Endre György Tóth, Francine Tremblay, Johann M. Housset, Yves Bergeron, Christopher Carcaillet
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0115137

Metacommunity versus Biogeography: A Case Study of Two Groups of Neotropical Vegetation-Dwelling Arthropods
Cited by: 27
Author(s): Thiago Gonçalves‐Souza, Gustavo Q. Romero, Karl Cottenie
Software Mentions: 7
Published: over 11 years ago

10.1186/s12870-021-03142-y

Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmolb.2021.665222

Identification of the m6A RNA Methylation Regulators WTAP as a Novel Prognostic Biomarker and Genomic Alterations in Cutaneous Melanoma
Cited by: 12
Author(s): Ziyi Feng, Ting Wang, Xin Su, Shu Guo
Software Mentions: 7
Published: almost 5 years ago

10.3389/fninf.2016.00027

CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave
Cited by: 386
Author(s): Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby
Software Mentions: 7
Published: almost 10 years ago

10.1038/s42003-020-01174-y

Chemically induced mutations in a MutaMouse reporter gene inform mechanisms underlying human cancer mutational signatures
Cited by: 12
Author(s): Marc A. Beal, Matthew J. Meier, Danielle P. LeBlanc, Clotilde Maurice, Jason M. O’Brien, Carole L. Yauk, Francesco Marchetti
Software Mentions: 7
Published: almost 6 years ago

10.1186/s13287-020-01823-3

Multiomics global landscape of stemness-related gene clusters in adipose-derived mesenchymal stem cells
Cited by: 8
Author(s): Guan-Ming Lu, Yong-Xian Rong, Zheng Liang, Dong-Lin Hunag, Yuju Ma, Zhizhai Luo, Fengyao Wu, Xinheng Liu, Yu Liu, Steven Mo, Zhongquan Qi, Hong-Mian Li
Software Mentions: 7
Published: almost 6 years ago

10.3390/insects12020089

Direct and Indirect Effect via Endophytism of Entomopathogenic Fungi on the Fitness of Myzus persicae and Its Ability to Spread PLRV on Tobacco
Cited by: 3
Author(s): Junior Corneille Fingu Mabola, Thomas Bawin, Frédéric Francis
Software Mentions: 7
Published: over 5 years ago

10.3389/fmed.2021.598382

Non-invasive Diagnostic Tests in Cystic Fibrosis-Related Liver Disease: A Diagnostic Test Accuracy Network Meta-Analysis
Cited by: 2
Author(s): Ágnes Rita Martonosi, Alexandra Soós, Zoltán Rumbus, Péter Hegyi, V. Izsák, Piroska Pázmány, Marcell Imrei, Szilárd Váncsa, Zsolt Szakács, Andrea Párniczky
Software Mentions: 7
Published: almost 5 years ago

10.1002/ece3.6802

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
Cited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pcbi.1006269

Evaluating reproducibility of AI algorithms in digital pathology with DAPPER
Cited by: 43
Author(s): Andrea Bizzego, Nicole Bussola, Marco Chierici, Valerio Maggio, Margherita Francescatto, Luca Cima, Marco Cristoforetti, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 7
Published: over 7 years ago

10.1534/g3.114.012526

Polymorphism Identification and Improved Genome Annotation of <i>Brassica rapa</i> Through Deep RNA Sequencing
Cited by: 30
Author(s): Upendra Kumar Devisetty, Michaeal F. Covington, An V. Tat, Saradadevi Lekkala, Julin N. Maloof
Software Mentions: 7
Published: over 11 years ago

10.3390/microorganisms7110492

Genetic and Phenotypic Characterisation of a Saccharomyces cerevisiae Population of ‘Merwah’ White Wine
Cited by: 8
Author(s): Nadine Feghali, Warren Albertin, Edouard Tabet, Ziad Rizk, Angela Bianco, Giacomo Zara, Isabelle Masneuf‐Pomarède, Marilena Budroni
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.5299

BTW—Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data
Cited by: 2
Author(s): Daniel Morais, Luiz Fernando Würdig Roesch, Marc Redmile‐Gordon, Fausto G. dos Santos, Petr Baldrián, Fernando Dini Andreote, Victor Satler Pylro
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12864-018-4673-2

Ginkgo biloba’s footprint of dynamic Pleistocene history dates back only 390,000 years ago
Cited by: 29
Author(s): Nora Hohmann, Eva M. Wolf, Philippe Rigault, Wenbin Zhou, Markus Kiefer, Yunpeng Zhao, Chengxin Fu, Marcus A. Koch
Software Mentions: 7
Published: about 8 years ago

10.3389/fmicb.2019.02197

Composition of Bacterial and Archaeal Communities in an Alkali-Surfactant-Polyacrylamide-Flooded Oil Reservoir and the Responses of Microcosms to Nutrients
Cited by: 14
Author(s): Peike Gao, Li Yu, Liang Tan, Feifei Guo, Ting Ma
Software Mentions: 7
Published: almost 7 years ago

10.3389/fpls.2020.00685

Hybridization Between Yuccas From Baja California: Genomic and Environmental Patterns
Cited by: 9
Author(s): María Clara Arteaga, Rafael Bello-Bedoy, Jaime Gasca-Pineda
Software Mentions: 7
Published: about 6 years ago

10.1016/j.heliyon.2021.e06160

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: over 5 years ago

10.1002/1873-3468.13278

The gut microbiome participates in transgenerational inheritance of low‐temperature responses in <i>Drosophila melanogaster</i>
Cited by: 23
Author(s): Aman Zare, Anna-Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg
Software Mentions: 7
Published: over 7 years ago

10.3389/fpls.2018.00029

Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)
Cited by: 26
Author(s): Anita Küpper, Harish Manmathan, Darci A. Giacomini, Eric Patterson, William B. McCloskey, Todd A. Gaines
Software Mentions: 7
Published: over 8 years ago

10.3390/genes12050637

Insight into the Genetic Population Structure of Wild Red Foxes in Poland Reveals Low Risk of Genetic Introgression from Escaped Farm Red Foxes
Cited by: 2
Author(s): Heliodor Wierzbicki, Magdalena Zatoń‐Dobrowolska, Anna Mucha, Magdalena Moska
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0187548

Multimodel inference applied to oxygen recovery kinetics after 6-min walk tests in patients with chronic obstructive pulmonary disease
Cited by: 2
Author(s): Florent Baty, Christian Ritz, Signe Marie Jensen, Lukas Kern, Michael Tamm, Martin Brutsche
Software Mentions: 7
Published: over 8 years ago

10.7554/eLife.69661

Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia
Cited by: 9
Author(s): Alex R. Schuurman, Tom D. Y. Reijnders, Anno Saris, Ivan Ramirez‐Moral, Michiel Schinkel, Justin de Brabander, Christine van Linge, Louis Vermeulen, Brendon P. Scicluna, W. Joost Wiersinga, Felipe A. Vieira Braga, Tom van der Poll
Software Mentions: 7
Published: almost 5 years ago

10.1126/sciadv.aaz5373

Freezing and water availability structure the evolutionary diversity of trees across the Americas
Cited by: 47
Author(s): Rocío Cortés, R. Toby Pennington, Tim R. Baker, Fernanda Coelho de Souza, Danilo M. Neves, Charles C. Davis, Juan J. Armestó, Ary Olivera-Filho, Kyle G. Dexter
Software Mentions: 7
Published: about 6 years ago

10.3389/fgene.2021.641788

Successful ATAC-Seq From Snap-Frozen Equine Tissues
Cited by: 8
Author(s): Sichong Peng, Rebecca R. Bellone, Jessica L. Petersen, Theodore S. Kalbfleisch, Carrie J. Finno
Software Mentions: 7
Published: about 5 years ago

10.12688/f1000research.27395.2

GeNePy3D: a quantitative geometry python toolbox for bioimaging
Cited by: 1
Author(s): Minh-Son Phan, Anatole Chessel
Software Mentions: 7
Published: about 5 years ago

10.3390/plants10051026

Foliar Endophytic Fungi from the Endangered Eastern Mountain Avens (Geum peckii, Rosaceae) in Canada
Cited by: 4
Author(s): Sarah J. Adams, Brent M. Robicheau, D.M. LaRue, Robin Browne, Allison K. Walker
Software Mentions: 7
Published: about 5 years ago

10.3390/microorganisms9040871

The Gut Microbiota Can Provide Viral Tolerance in the Honey Bee
Cited by: 36
Author(s): Christopher Dosch, Anja Manigk, Tabea Streicher, Anja Tehel, Robert J. Paxton, Simon Tragust
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2021.691811

Immune Infiltrating Cells-Derived Risk Signature Based on Large-scale Analysis Defines Immune Landscape and Predicts Immunotherapy Responses in Glioma Tumor Microenvironment
Cited by: 36
Author(s): Nan Zhang, Hao Zhang, Zeyu Wang, Ziyu Dai, Xun Zhang, Quan Cheng, Zhixiong Liu
Software Mentions: 7
Published: almost 5 years ago

10.3390/nu12102934

Dietary Sodium Intake and Risk of Cardiovascular Disease: A Systematic Review and Dose-Response Meta-Analysis
Cited by: 64
Author(s): Yijie Wang, Tzu‐Lin Yeh, Ming‐Chieh Shih, Yu‐Kang Tu, Kuo–Liong Chien
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2018.02528

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico
Cited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: over 7 years ago

10.1007/s11136-021-02880-8

Support for the higher-order factor structure of the WHODAS 2.0 self-report version in a Dutch outpatient psychiatric setting
Cited by: 3
Author(s): Guido L. Williams, Edwin de Beurs, Philip Spinhoven, Gerard Flens, Muirne C. S. Paap
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0188966

AMModels: An R package for storing models, data, and metadata to facilitate adaptive management
Cited by: 2
Author(s): Therese M. Donovan, Jonathan E. Katz
Software Mentions: 7
Published: over 8 years ago

10.3389/fninf.2014.00023

CyNEST: a maintainable Cython-based interface for the NEST simulator
Cited by: 22
Author(s): Yury V. Zaytsev, Abigail Morrison
Software Mentions: 7
Published: over 12 years ago

10.1038/s41598-019-42784-9

Transcriptomic profiles conducive to immune-mediated tumor rejection in human breast cancer skin metastases treated with Imiquimod
Cited by: 23
Author(s): Mariya Rozenblit, Wouter Hendrickx, Adriana Heguy, Luis Chiriboga, Cynthia A. Loomis, Karina Ray, Farbod Darvishian, Mikala Egeblad, Sandra Demaria, Francesco M. Marincola, Davide Bedognetti, Sylvia Adams
Software Mentions: 7
Published: about 7 years ago

10.3390/cancers11060759

Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer
Cited by: 31
Author(s): Fayez Kheir, Mengmeng Zhao, Michael J. Strong, Yi Yu, Asuka Nanbo, Erik K. Flemington, Gilbert F. Morris, Krzysztof Reiss, Li Li, Zhen Lin
Software Mentions: 7
Published: about 7 years ago

10.3390/molecules25246057

QSAR Model for Predicting the Cannabinoid Receptor 1 Binding Affinity and Dependence Potential of Synthetic Cannabinoids
Cited by: 5
Author(s): Won Young Lee, So‐Jung Park, Ji-Young Hwang, Choon‐Gon Jang, Yong Sup Lee, Jongmin Kim, Xiaodi Zhao, Aekyung Park, Kyung Hoon Min, Choon‐Gon Jang, Hyun-Ju Park
Software Mentions: 7
Published: over 5 years ago

10.3390/s21175812

One Metre Plus (1M+): A Multifunctional Open-Source Sensor for Bicycles Based on Raspberry Pi
Cited by: 4
Author(s): Andres Henao, Philippe Apparicio, David Maignan
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0235779

Prostate MRI added to CAPRA, MSKCC and Partin cancer nomograms significantly enhances the prediction of adverse findings and biochemical recurrence after radical prostatectomy
Cited by: 7
Author(s): Kevin Sandeman, Juho Eineluoto, Joona Pohjonen, Andrew Erickson, Tuomas P. Kilpeläinen, Petrus Järvinen, Henrikki Santti, Anssi Pétas, Mika Matikainen, Suvi Marjasuo, Anu Kenttämies, Tuomas Mirtti, Antti Rannikko
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12940-020-00644-4

A family of partial-linear single-index models for analyzing complex environmental exposures with continuous, categorical, time-to-event, and longitudinal health outcomes
Cited by: 7
Author(s): Yuyan Wang, Yinxiang Wu, Melanie H. Jacobson, Myeonggyun Lee, Peng Jin, Leonardo Trasande, Mengling Liu
Software Mentions: 7
Published: almost 6 years ago

10.3390/s21175740

BioPyC, an Open-Source Python Toolbox for Offline Electroencephalographic and Physiological Signals Classification
Cited by: 5
Author(s): Aurélien Appriou, Léa Pillette, David Trocellier, Dan Dutartre, Andrzej Cichocki, Fabien Lotte
Software Mentions: 7
Published: almost 5 years ago

10.7717/peerj.1366

Taking account of uncertainties in digital land suitability assessment
Cited by: 14
Author(s): Brendan Malone, Darren Kidd, Budiman Minasny, Alex B. McBratney
Software Mentions: 7
Published: over 10 years ago

10.3389/fendo.2021.672319

Adrenocortical Carcinoma Steroid Profiles: In Silico Pan-Cancer Analysis of TCGA Data Uncovers Immunotherapy Targets for Potential Improved Outcomes
Cited by: 6
Author(s): João C. D. Muzzi, Jessica Maria Magno, Milena A. Cardoso, Juliana de Moura, Mauro A. A. Castro, Bonald C. Figueiredo
Software Mentions: 7
Published: about 5 years ago

10.3390/ani11061835

An Investigation into the Influence of Different Types of Nesting Materials upon the Welfare of Captive Chimpanzees (Pan troglodytes)
Cited by: 2
Author(s): N. Anderson, Bala Amarasekaran, David Riba
Software Mentions: 7
Published: about 5 years ago

10.1186/s13321-020-00481-0

ChemSpectra: a web-based spectra editor for analytical data
Cited by: 8
Author(s): Yu‐Chieh Huang, Pierre Tremouilhac, An Nguyẽ̂n, Nicole Jung, Stefan Bräse
Software Mentions: 7
Published: over 5 years ago

10.3390/s20051473

Connected Bike-smart IoT-based Cycling Training Solution
Cited by: 4
Author(s): George Catargiu, Eva‐Henrietta Dulf, Liviu Miclea
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2020.588411

Distinctive Cellular and Metabolic Reprogramming in Porcine Lung Mononuclear Phagocytes Infected With Type 1 PRRSV Strains
Cited by: 6
Author(s): Elisa Crisci, Marco Moroldo, Thien‐Phong Vu Manh, Ammara Mohammad, Laurent Jourdren, Céline Urien, Edwige Bouguyon, Elise Bordet, Claudia Bevilacqua, Mickaël Bourge, Jérémy Pezant, Alexis Pléau, Olivier Boulesteix, Isabelle Schwartz, Nicolas Bertho, Elisabetta Giuffra
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0163962

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Cited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0232306

A new automated chilled adult release system for the aerial distribution of sterile male tsetse flies
Cited by: 4
Author(s): Caroline K. Mirieri, Gratian N. Mutika, Jimmy Bruno, Momar Talla Seck, Baba Sall, Andrew G. Parker, Monique M. van Oers, Marc J. B. Vreysen, Jérémy Bouyer, Adly M. M. Abd-Alla
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-38195-x

Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice
Cited by: 5
Author(s): Bradley W. Tonnessen, A. M. Bossa-Castro, Ramil Mauleon, Nickolai Alexandrov, Jan E. Leach
Software Mentions: 7
Published: over 7 years ago

10.3390/genes11091107

Integrated Analysis of Gene Expression, SNP, InDel, and CNV Identifies Candidate Avirulence Genes in Australian Isolates of the Wheat Leaf Rust Pathogen Puccinia triticina
Cited by: 5
Author(s): Long Song, Jing Qin Wu, Chongmei Dong, Robert Park
Software Mentions: 7
Published: almost 6 years ago

10.3389/fninf.2017.00044

SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales
Cited by: 13
Author(s): Martin Rueckl, Stephen C. Lenzi, Laura Moreno-Velasquez, Daniel Parthier, Dietmar Schmitz, Sten Ruediger, Friedrich W. Johenning
Software Mentions: 7
Published: almost 9 years ago

10.1371/journal.pntd.0006035

Drivers of house invasion by sylvatic Chagas disease vectors in the Amazon-Cerrado transition: A multi-year, state-wide assessment of municipality-aggregated surveillance data
Cited by: 34
Author(s): Raíssa N. Brito, David Eladio Gorla, Liléia Diotaiuti, Anália Celencina Fagundes Gomes, Rita C. M. Souza, Fernando Abad‐Franch
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0253095

Year-round at-sea distribution and trophic resources partitioning between two sympatric Sulids in the tropical Atlantic
Cited by: 6
Author(s): Nathalie Almeida, Jaime A. Ramos, Isabel Rodrigues, Ivo dos Santos, Jorge M. Pereira, Diana M. Matos, Pedro Araújo, Pedro Geraldes, Tommy Melo, Vítor H. Paiva
Software Mentions: 7
Published: about 5 years ago

10.3389/fpsyg.2017.01849

Discrete- vs. Continuous-Time Modeling of Unequally Spaced Experience Sampling Method Data
Cited by: 65
Author(s): Silvia de Haan-Rietdijk, Manuel C. Voelkle, Loes Keijsers, Ellen L. Hamaker
Software Mentions: 7
Published: over 8 years ago

10.1098/rspb.2017.0401

<i>Tetranychus urticae</i> mites do not mount an induced immune response against bacteria
Cited by: 17
Author(s): Gonçalo Santos-Matos, Nicky Wybouw, Nelson Martins, Flore Zélé, Maria Riga, Alexandre B. Leitão, John Vontas, Miodrag Grbić, Thomas Van Leeuwen, Sara Magalhães, Élio Sucena
Software Mentions: 7
Published: about 9 years ago

10.1186/s12859-021-03984-1

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies
Cited by: 6
Author(s): Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal K. Das, Paweł Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski
Software Mentions: 7
Published: over 5 years ago

10.3390/microorganisms7090349

Site-Specific Microbial Decomposer Communities Do Not Imply Faster Decomposition: Results from a Litter Transplantation Experiment
Cited by: 16
Author(s): Aïda Bani, Luigimaria Borruso, Kirsty J. Matthews Nicholass, Tommaso Bardelli, Andrea Polo, Silvia Pioli, María Gómez-Brandòn, Heribert Insam, Alex J. Dumbrell, Lorenzo Brusetti
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.2762

Context‐dependent functional dispersion across similar ranges of trait space covered by intertidal rocky shore communities
Cited by: 25
Author(s): Nelson Valdivia, V. Segovia-Rivera, Eliseo Fica, César C. Bonta, Moisés A. Aguilera, Bernardo R. Broitman
Software Mentions: 7
Published: over 9 years ago

10.3389/fmolb.2021.624951

Metabolism-Relevant Molecular Classification Identifies Tumor Immune Microenvironment Characterization and Immunotherapeutic Effect in Cervical Cancer
Cited by: 4
Author(s): Luyi Li, Hui Gao, Danhan Wang, Hao Jiang, Hongzhu Wang, Jiajian Yu, Xin Jiang, Changjiang Huang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: about 6 years ago

10.3390/nu12113524

Metabolic Responses to Butyrate Supplementation in LF- and HF-Fed Mice Are Cohort-Dependent and Associated with Changes in Composition and Function of the Gut Microbiota
Cited by: 8
Author(s): Sun Hye Lee, Trina A. Knotts, Michael L. Goodson, Mariana Barboza, Elyse V. Wudeck, Grace England, Helen E. Raybould
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2021.693039

Far-Red Light-Induced Azolla filiculoides Symbiosis Sexual Reproduction: Responsive Transcripts of Symbiont Nostoc azollae Encode Transporters Whilst Those of the Fern Relate to the Angiosperm Floral Transition
Cited by: 5
Author(s): Laura W. Dijkhuizen, Badraldin Ebrahim Sayed Tabatabaei, Paul Brouwer, Niels Rijken, Valerie A. Buijs, Erbil Güngör, Henriette Schluepmann
Software Mentions: 7
Published: almost 5 years ago

10.2196/19791

Investigating the Prevalence of Reactive Online Searching in the COVID-19 Pandemic: Infoveillance Study
Cited by: 27
Author(s): Rafael A Badell-Grau, Jordan P. Cuff, Brendan P. Kelly, Helen Waller-Evans, Emyr Lloyd-Evans
Software Mentions: 7
Published: over 5 years ago

10.1186/1477-5956-8-59

Proteomic analysis of streptomycin resistant and sensitive clinical isolates of Mycobacterium tuberculosis
Cited by: 45
Author(s): Prashant Sharma, Bhavnesh Kumar, Yash Gupta, Neelja Singhal, Vishwa Mohan Katoch, K Venkatesan, Deepa Bisht
Software Mentions: 7
Published: over 15 years ago

10.3390/v11121085

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages
Cited by: 19
Author(s): Patrick A. de Jonge, F. A. Bastiaan von Meijenfeldt, Laura E van Rooijen, Stan J. J. Brouns, Bas E. Dutilh
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.63650

Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates
Cited by: 8
Author(s): Rylan Shearn, Alison E. Wright, Sylvain Mousset, Corinne Régis, Simon Penel, Jean‐François Lemaître, Guillaume Douay, Brigitte Crouau‐Roy, Émilie Lecompte, Gabriel Marais
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.15366

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts
Cited by: 36
Author(s): María Lucena-Pérez, Elena Marmesat, Daniel Kleinman‐Ruiz, Begoña Martínez‐Cruz, Karolina Wȩcek, Alexander P. Saveljev, Ivan V. Seryodkin, И. М. Охлопков, Mikhail G. Dvornikov, Jurijs Ozoliņš, Naranbaatar Galsandorj, Milan Paunović, Mirosław Ratkiewicz, Krzysztof Schmidt, José A. Godoy
Software Mentions: 7
Published: over 6 years ago

10.3389/fonc.2021.636565

Identification and Development of Subtypes With Poor Prognosis in Pan-Gynecological Cancer Based on Gene Expression in the Glycolysis-Cholesterol Synthesis Axis
Cited by: 6
Author(s): Guangwei Wang, Xiaofei Liu, Dandan Wang, Meige Sun, Qing Yang
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: over 5 years ago

10.3390/jof7040253

Molecular and Environmental Triggering Factors of Pathogenicity of Fusarium oxysporum and F. solani Isolates Involved in the Coffee Corky-Root Disease
Cited by: 3
Author(s): Roberto Gamboa-Becerra, Daniel López-Lima, Luc Villain, Jean‐Christophe Breitler, Gloria Carrión, Damaris Desgarennes
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.15724

Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
Cited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.ppat.1009418

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity
Cited by: 10
Author(s): Cédric Lood, Charlotte Peeters, Quentin Lamy-Besnier, Jeroen Wagemans, Daniël De Vos, Marijke Proesmans, Jean‐Paul Pirnay, Fedoua Echahidi, Denis Piérard, M Thimmesch, Anca Boeras, Katrien Lagrou, Evelien De Canck, Elke De Wachter, Vera van Noort, Rob Lavigne, Peter Vandamme
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.11215

Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells
Cited by: 35
Author(s): João D. Dias, Tiago Rito, Elena Torlai Triglia, Alexander Kukalev, Carmelo Ferrai, Mita Chotalia, Emily Brookes, Hiroshi Kimurâ, Ana Pombo
Software Mentions: 7
Published: over 10 years ago

10.1155/2021/1801873

Identification of Key Functional Modules and Immunomodulatory Regulators of Hepatocellular Carcinoma
Cited by: 2
Author(s): Dan Luo, Xiang Zhang, Xiaokai Li, Gang Chen
Software Mentions: 7
Published: almost 5 years ago

10.1111/eva.12849

Single nucleotide polymorphisms reveal a genetic cline across the north‐east Atlantic and enable powerful population assignment in the European lobster
Cited by: 33
Author(s): Tom L. Jenkins, Charlie D. Ellis, Alexandros Triantafyllidis, Jamie R. Stevens
Software Mentions: 7
Published: almost 7 years ago

10.3389/fonc.2020.553399

CD8+ T Cell Co-Expressed Genes Correlate With Clinical Phenotype and Microenvironments of Urothelial Cancer
Cited by: 20
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Yang Liu, Jianfeng Wang, Xuejie Li, Xinxin Li, Zhixiong Hua, Zhenhua Zheng, Jianxiu Shi, Siqing Sun, Jianbin Bi
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-76364-z

Genetic evidence supports three previously described species of greater glider, Petauroides volans, P. minor, and P. armillatus
Cited by: 21
Author(s): Denise C. McGregor, Amanda Padovan, Arthur Georges, Andrew K. Krockenberger, Hwan Jin Yoon, Kara N. Youngentob
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0231824

Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis
Cited by: 0
Author(s): Simone Lederer, Tom Heskes, Simon J. van Heeringen, Cornelis A. Albers
Software Mentions: 7
Published: about 6 years ago

10.3389/fmolb.2020.00053

Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory Therapy
Cited by: 1
Author(s): Yong Xu, Daixi Li, Zhenhao Liu, David L. Gibbs, Lu Xie, Guangrong Qin
Software Mentions: 7
Published: about 6 years ago

10.14814/phy2.14880

Animal blood in translational research: How to adjust animal blood viscosity to the human standard
Cited by: 6
Author(s): Paul Ecker, Andreas Sparer, Benjamin Lukitsch, Martin Elenkov, Monika Seltenhammer, Richard Crevenna, Margit Gfoehler, Michael Harasek, Ursula Windberger
Software Mentions: 7
Published: about 5 years ago

10.3390/md18080379

Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)
Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: almost 6 years ago

10.1136/jitc-2021-002467

Tumor microenvironment evaluation promotes precise checkpoint immunotherapy of advanced gastric cancer
Cited by: 75
Author(s): Dongqiang Zeng, Jiani Wu, Hongyu Luo, Yong Li, Jian Xiao, Jianjun Peng, Zilan Ye, Rui Zhou, Yunfang Yu, Gaofeng Wang, Na Huang, Jianhua Wu, Xiaoxiang Rong, Li Sun, Huiying Sun, Wenjun Qiu, Yuting Xue, Jianping Bin, Yulin Liao, Li N, Min Shi, Kyoung‐Mee Kim, Wangjun Liao
Software Mentions: 7
Published: almost 5 years ago

10.1016/j.dib.2021.107324

Data for modeling nitrogen dioxide concentration levels across Germany
Cited by: 2
Author(s): Markus Fritsch, Svenia Behm
Software Mentions: 7
Published: over 4 years ago

10.3389/fpls.2021.637115

The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype
Cited by: 9
Author(s): Tatiana Arias, Chad E. Niederhuth, Paula McSteen, J. Chris Pires
Software Mentions: 7
Published: over 5 years ago

10.1242/dmm.049068

A mechanism linking perinatal 2,3,7,8 tetrachlorodibenzo-p-dioxin exposure to lower urinary tract dysfunction in adulthood
Cited by: 4
Author(s): Anne E. Turco, S. G. Oakes, Kimberly P. Keil Stietz, Cheryl L. Dunham, Diya B. Joseph, Thrishna S Chathurvedula, Nicholas M Girardi, Andrew J. Schneider, Joseph Gawdzik, Celeste M Sheftel, Peiqing Wang, Zunyi Wang, Dale E. Bjorling, William A. Ricke, Weiping Tang, Laura Hernández, Janet R. Keast, Adrian D. Bonev, Matthew D Grimes, Douglas W. Strand, Nathan R. Tykocki, Robyn L Tanguay, Richard E. Peterson, Chad M. Vezina
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-021-85016-9

Comparative analysis of machine learning algorithms for computer-assisted reporting based on fully automated cross-lingual RadLex mappings
Cited by: 4
Author(s): Máté E. Maros, Chang Gyu Cho, Andreas Junge, Benedikt Kämpgen, Victor Saase, Fabian Siegel, Frederik Trinkmann, Thomas Ganslandt, Christoph Groden, Holger Wenz
Software Mentions: 7
Published: over 5 years ago

10.1038/sdata.2017.149

Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus
Cited by: 12
Author(s): Pirita Paajanen, Jan Strauss, Cock van Oosterhout, Mark McMullan, Matt Clark, Thomas Möck
Software Mentions: 7
Published: over 8 years ago

10.3389/fmicb.2021.660719

Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road Salts
Cited by: 14
Author(s): Isabelle B. Fournier, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 7
Published: about 5 years ago

10.7717/peerj.7233

An artificial-vision- and statistical-learning-based method for studying the biodegradation of type I collagen scaffolds in bone regeneration systems
Cited by: 9
Author(s): Y. Robles-Bykbaev, Salvador Naya, Silvia Díaz‐Prado, D. Calle-Lopez, Vladimir Robles-Bykbaev, Luis Garzón, Clara Sanjurjo‐Rodríguez, Javier Tarrío-Saavedra
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.7646

Many ways to make darker flies: Intra‐ and interspecific variation in <i>Drosophila</i> body pigmentation components
Cited by: 5
Author(s): Elvira Lafuente, Filipa Alves, Jessica G. King, Carolina M Peralta, Patrícia Beldade
Software Mentions: 7
Published: about 5 years ago