Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/1751-7915.13640

https://doi.org/10.1111/1751-7915.13640

Synthetic community with six <i>Pseudomonas</i> strains screened from garlic rhizosphere microbiome promotes plant growth

Cited by: 55
Author(s): Lubo Zhuang, Yán Li, Zhenshuo Wang, Yue Yu, Nan Zhang, Chang Yeol Yang, Qingchao Zeng, Qi Wang
Published: over 4 years ago

Software Mentions 7

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555