Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.56523

https://doi.org/10.7554/eLife.56523

Cited by: 25
Author(s): Maria M. Mikedis, Yuting Fan, Peter K. Nicholls, Toshihiko Endo, Emily Jackson, Sarah A. Cobb, Dirk G. de Rooij, David C. Page
Published: almost 4 years ago

Software Mentions 7

bioconductor: coRdon

Codon Usage Analysis and Prediction of Gene Expressivity
Papers that mentioned: 6

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: fastx

Just a simple kseq.h binding
Papers that mentioned: 197

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307

pypi: rna

Basic and essential code building blocks of all pythons
Papers that mentioned: 8