Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: rna

https://packages.ecosyste.ms/registries/pypi.org/packages/rna

Basic and essential code building blocks of all pythons
35 versions
Latest release: over 1 year ago
1 dependent package
232 downloads last month

Papers Mentioning rna 8

10.12688/f1000research.18458.2

3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
Cited by: 15
Author(s): Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Software Mentions: 11
Published: over 5 years ago

10.7554/eLife.56523

DAZL mediates a broad translational program regulating expansion and differentiation of spermatogonial progenitors
Cited by: 25
Author(s): Maria M. Mikedis, Yuting Fan, Peter K. Nicholls, Toshihiko Endo, Emily Jackson, Sarah A. Cobb, Dirk G. de Rooij, David C. Page
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0063906

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
Cited by: 311
Author(s): Sergey Lyskov, Fang Chieh Chou, Shane Ó Conchúir, Bryan S. Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D. Weitzner, P. Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J. Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J. Gray, Rhiju Das
Software Mentions: 5
Published: over 11 years ago

10.1186/s13104-017-2616-7

fastQ_brew: module for analysis, preprocessing, and reformatting of FASTQ sequence data
Cited by: 6
Author(s): Damien M. O’Halloran
Software Mentions: 5
Published: over 7 years ago

10.1101/2020.12.05.409821

Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures
Cited by: 6
Author(s): Martina Zafferani, Christina Haddad, Le Luo, Jesse Davila‐Calderon, Liang Yuan-Chiu, Christian Shema Mugisha, Adeline G. Monaghan, Andrew Kennedy, Joseph D. Yesselman, Robert R Gifford, Andrew W. Tai, Sebla B. Kutluay, Meiling Li, Gary Brewer, Blanton S. Tolbert, Amanda E. Hargrove
Software Mentions: 5
Published: almost 4 years ago

10.7717/peerj-cs.397

Effects of network topology on the performance of consensus and distributed learning of SVMs using ADMM
Cited by: 3
Author(s): Shirin Tavara, Alexander Schliep
Software Mentions: 2
Published: over 3 years ago

10.1002/cam4.2853

Expression profiles of miRNAs in giant cell tumor of bone showed miR‐187‐5p and miR‐1323 can regulate biological functions through inhibiting FRS2
Cited by: 5
Author(s): Yuanhan Jin, Jing Zhang, Hao Zhu, Gentao Fan, Guangxin Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-12-S3-S12

i-rDNA: alignment-free algorithm for rapid in silico detection of ribosomal gene fragments from metagenomic sequence data sets
Cited by: 2
Author(s): Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Sudha Chadaram, Sharmila S. Mande
Software Mentions: 1
Published: almost 13 years ago