Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.18458.2

https://doi.org/10.12688/f1000research.18458.2

3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.

Cited by: 15
Author(s): Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Published: over 5 years ago

Software Mentions 11

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: visualize
Graph Probability Distributions with User Supplied Parameters and Statistics
Papers that mentioned: 6
pypi: appdirs
A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
Papers that mentioned: 1
pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: forgi
RNA Graph Library
Papers that mentioned: 2
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
pypi: rna
Basic and essential code building blocks of all pythons
Papers that mentioned: 8
pypi: Sphinx
Python documentation generator
Papers that mentioned: 88
pypi: visualize
useful visualization function
Papers that mentioned: 6