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bioconductor: TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumoursPapers that mentioned: 5
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pypi: graphlan
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.Papers that mentioned: 5
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cran: simPH
Simulate and Plot Estimates from Cox Proportional Hazards ModelsPapers that mentioned: 5
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pypi: dose
Automated traffic light/signal/semaphore GUI showing the state during test driven development (TDD), mainly written for coding dojos.Papers that mentioned: 5
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bioconductor: rGREAT
GREAT Analysis - Functional Enrichment on Genomic RegionsPapers that mentioned: 5
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pypi: ip
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bioconductor: annmap
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.Papers that mentioned: 5
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pypi: Lightning
The Deep Learning framework to train, deploy, and ship AI products Lightning fast.Papers that mentioned: 5
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cran: cccrm
Concordance Correlation Coefficient for Repeated (and Non-Repeated) MeasuresPapers that mentioned: 5
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bioconductor: segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataPapers that mentioned: 5
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pypi: routine
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pypi: tide
From text editor to Integrated Development Environment. This allows you to use a yaml config and some scripting to deliver cross-platform, cross-editor plugins.Papers that mentioned: 5
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pypi: ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasetsPapers that mentioned: 5
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pypi: FlowCytometryTools
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cran: MultinomialCI
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cran: assortnet
Calculate the Assortativity Coefficient of Weighted and Binary NetworksPapers that mentioned: 5
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bioconductor: TargetScore
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence informationPapers that mentioned: 5
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cran: MATA
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cran: PSF
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cran: bayesvl
Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan'Papers that mentioned: 5
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cran: QTL.gCIMapping.GUI
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cran: bcrm
Bayesian Continual Reassessment Method for Phase I Dose-Escalation TrialsPapers that mentioned: 5
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cran: adegraphics
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cran: AdequacyModel
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cran: RRate
Estimating Replication Rate for Genome-Wide Association StudiesPapers that mentioned: 5
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pypi: gpuNUFFT
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cran: rriskDistributions
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pypi: Mitra
Provides basic operatons of Matrix and solve system of linear equations using Matrix. It also finds eigenvalues of Square Matrix.Papers that mentioned: 5
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cran: EMAtools
Data Management Tools for Real-Time Monitoring/Ecological Momentary Assessment DataPapers that mentioned: 5
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