Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: inStrain

https://packages.ecosyste.ms/registries/pypi.org/packages/inStrain

Calculation of strain-level metrics
59 versions
Latest release: over 1 year ago
71 downloads last month

Papers Mentioning inStrain 5

Haploflow: strain-resolved de novo assembly of viral genomes
Cited by: 15
Author(s): Adrian Fritz, Andreas Bremges, Zhi-Luo Deng, Till Robin Lesker, Jasper Götting, Tina Ganzenmueller, Alexander Sczyrba, Alexander Dilthey, Frank Klawonn, Alice C. McHardy
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2021.665041

A Novel SARS-CoV-2 Viral Sequence Bioinformatic Pipeline Has Found Genetic Evidence That the Viral 3′ Untranslated Region (UTR) Is Evolving and Generating Increased Viral Diversity
Cited by: 19
Author(s): Carlos Farkas, Andy Mella, Maxime Turgeon, Jody J. Haigh
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-021-02419-7

STRONG: metagenomics strain resolution on assembly graphs
Cited by: 53
Author(s): Christopher Quince, Sergey Nurk, Sébastien Raguideau, Rob S. James, Orkun S. Soyer, J Kimberley Summers, Antoine Limasset, A. Murat Eren, Rayan Chikhi, Aaron E. Darling
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.02703-20

Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants
Cited by: 250
Author(s): Alexander Crits-Christoph, Rose Kantor, Matthew R. Olm, Oscar N. Whitney, Basem Al-Shayeb, Yue Clare Lou, Avi I. Flamholz, Lauren C Kennedy, Hannah Greenwald, Adrian Hinkle, Jonathan Hetzel, Sara Spitzer, Jeffery Koble, Aiping Tan, F W Hyde, Gary P. Schroth, Scott Kuersten, Jillian F. Banfield, Kara L. Nelson
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41396-021-00985-z

Ecologically coherent population structure of uncultivated bacterioplankton
Cited by: 20
Author(s): Conny Sjöqvist, Luis Fernando Delgado, Johannes Alneberg, Anders F. Andersson
Software Mentions: 2
Published: over 3 years ago