Data

Tools

Indexes

Applications

Experiments

Papers

Projects: pypi: AxonDeepSeg

https://packages.ecosyste.ms/registries/pypi.org/packages/AxonDeepSeg

Python tool for automatic axon and myelin segmentation
14 versions
Latest release: almost 6 years ago
76 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: AxonDeepSeg (organization)
Segmentation software for microscopy data of nerve fibers based on deep learning. Institutional
README Analysis: DOI Found ArXiv Preprint
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +15 Institutional repository owner
    Repository owned by research institution
  • +20 Science terms in README
    10 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
  • +18 Academic links
    3 academic links found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning AxonDeepSeg 5

10.1523/ENEURO.0558-20.2021
MyelTracer: A Semi-Automated Software for Myelin<i>g</i>-Ratio Quantification
Cited by: 22
Author(s): Tobias Kaiser, Harrison Mitchell Allen, Ohyoon Kwon, Boaz Barak, Jing Wang, Zhigang He, Minqing Jiang, Guoping Feng
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0248323
A simple and robust method for automating analysis of naïve and regenerating peripheral nerves
Cited by: 5
Author(s): Alison Wong, Nicholas Hricz, Harsha Malapati, Nicholas von Guionneau, Michael Wong, Thomas K. Harris, Mathieu Boudreau, Julien Cohen‐Adad, Sami H. Tuffaha
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pcbi.1008725
On the open-source landscape of PLOS Computational Biology
Cited by: 9
Author(s): Mathieu Boudreau, Jean‐Baptiste Poline, Pierre Bellec, Nikola Stikov
Software Mentions: 1
Published: over 5 years ago
10.1016/j.csbj.2020.08.003
A bird’s-eye view of deep learning in bioimage analysis
Cited by: 89
Author(s): Erik Meijering
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-22181-4
AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks
Cited by: 85
Author(s): Aldo Zaimi, Maxime Wabartha, Victor Herman, Pierre-Louis Antonsanti, Christian S. Perone, Julien Cohen‐Adad
Software Mentions: 1
Published: over 8 years ago