pypi projects 9,932
pypi: SeedWaterSegmenter
graphical program to interactively segment image stacks of cells in tissue with edge-labels (aka. white outlines)Papers that mentioned: 3
Very Likely Science (65)
pypi: PyMieScatt
A collection of forward and inverse Mie solving routines based on Bohren and Huffman's Mie Theory derivations.Papers that mentioned: 3
Likely Science (55)
pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta filePapers that mentioned: 3
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pypi: hivmmer
An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER.Papers that mentioned: 3
Very Likely Science (100)
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pypi: hoppMCMC
An adaptive basin-hopping Markov-chain Monte Carlo algorithm for Bayesian optimisationPapers that mentioned: 3
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pypi: lnet
Utilities to define and bootstrap lightning networks for testingPapers that mentioned: 3
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pypi: mahalanobis
Package for performing calculations of Mahalanobis distancesPapers that mentioned: 3
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pypi: NVR
python implementation of gene feature selection used in Welch et al.,2016Papers that mentioned: 3
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pypi: pert
[](https://travis-ci.com/leliel12/pert)Papers that mentioned: 3
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pypi: polynom
python package for evaluation and differentiation of polynomials in various basis representationsPapers that mentioned: 3
Very Likely Science (65)
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pypi: pong
Ultra-fast analysis and interactive visualization of population structure plots from Structure/Admixture dataPapers that mentioned: 3
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pypi: tax
A taxy Tox to tax your current site-packages. This is a variant of Tox that doesn't use virtualenvs at all - just installs everything in the current environment. Use at your own peril.Papers that mentioned: 3
Very Likely Science (65)
pypi: SNPmatch
A simple python library to identify the most likely strain given the SNPs for a samplePapers that mentioned: 3
Very Likely Science (100)
pypi: promo
Library for manipulating pitch and duration in an algorithmic way, for resynthesizing speechPapers that mentioned: 3
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pypi: pygo
Needed to be installed to use the GO pygo package which allows calling python functions from GO langPapers that mentioned: 3
Very Likely Science (65)
pypi: PyFraME
PyFraME: Python framework for Fragment-based Multiscale EmbeddingPapers that mentioned: 3
Very Likely Science (100)
Very Likely Science (65)
pypi: pykalman
An implementation of the Kalman Filter, Kalman Smoother, and EM algorithm in PythonPapers that mentioned: 3
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pypi: PyParanoid
Fast and scalable homolog detection for thousands of genomesPapers that mentioned: 3
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pypi: Pyrogram
Elegant, modern and asynchronous Telegram MTProto API framework in Python for users and botsPapers that mentioned: 3
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pypi: pyn
Papers that mentioned: 2
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pypi: product
Papers that mentioned: 2
Very Likely Science (65)
pypi: marquee
A simple Python logging formatter and handler for CloudWatch EventsPapers that mentioned: 2
Very Likely Science (65)
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Very Likely Science (65)
pypi: PyPDF2
A pure-python PDF library capable of splitting, merging, cropping, and transforming PDF filesPapers that mentioned: 2
Very Likely Science (65)
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pypi: pummelo
Papers that mentioned: 2
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pypi: pool
general purposed connection pool for gevent, split from sqlalchemyPapers that mentioned: 2
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pypi: gsutil
A command line tool for interacting with cloud storage services.Papers that mentioned: 2
Very Likely Science (65)
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pypi: pyscenic
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.Papers that mentioned: 2
Very Likely Science (100)
Very Likely Science (65)
pypi: mygrid
A package to represent a electric grid topology with extensions to make power flow and short circuit analysisPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (65)