Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: hivmmer

https://packages.ecosyste.ms/registries/pypi.org/packages/hivmmer

An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER.
2 versions
Latest release: over 4 years ago
2 downloads last month

Papers Mentioning hivmmer 3

10.1002/jia2.25193
Bioinformatic data processing pipelines in support of next‐generation sequencing‐based <scp>HIV</scp> drug resistance testing: the Winnipeg Consensus
Cited by: 35
Author(s): Hezhao Ji, Eric Enns, Chanson J. Brumme, Neil Parkin, Mark Howison, Emma R. Lee, Rupert Capiña, Eric Marinier, Santiago Ávila‐Ríos, Paul Sandstrom, Gary Van Domselaar, Richard Harrigan, Roger Paredes, Rami Kantor, Marc Noguera‐Julian
Software Mentions: 3
Published: about 6 years ago
10.3390/v12020149
Emerging PCR-Based Techniques to Study HIV-1 Reservoir Persistence
Cited by: 18
Author(s): Laurens Lambrechts, Basiel Cole, Sofie Rutsaert, Wim Trypsteen, Linos Vandekerckhove
Software Mentions: 2
Published: almost 5 years ago
10.3390/v12060586
Are We Ready for NGS HIV Drug Resistance Testing? The Second “Winnipeg Consensus” Symposium
Cited by: 15
Author(s): Hezhao Ji, Paul Sandstrom, Roger Paredes, P. Richard Harrigan, Chanson J. Brumme, Santiago Ríos, Marc Noguera-Julián, Neil Parkin, Rami Kantor
Software Mentions: 1
Published: over 4 years ago