Projects: pypi: hivmmer
https://packages.ecosyste.ms/registries/pypi.org/packages/hivmmer
An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER.
2 versions
Latest release: about 6 years ago
2 downloads last month
Enhanced Analysis
Educational Contributors:
mhowison@brown.edu
Repository Activity:
Repository Owner:
Kantor Lab (organization)
Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning hivmmer 3
10.1002/jia2.25193
Bioinformatic data processing pipelines in support of next‐generation sequencing‐based <scp>HIV</scp> drug resistance testing: the Winnipeg ConsensusCited by: 35
Author(s): Hezhao Ji, Eric Enns, Chanson J. Brumme, Neil Parkin, Mark Howison, Emma R. Lee, Rupert Capiña, Eric Marinier, Santiago Ávila‐Ríos, Paul Sandstrom, Gary Van Domselaar, Richard Harrigan, Roger Paredes, Rami Kantor, Marc Noguera‐Julian
Software Mentions: 3
Published: almost 8 years ago
10.3390/v12020149
Emerging PCR-Based Techniques to Study HIV-1 Reservoir PersistenceCited by: 18
Author(s): Laurens Lambrechts, Basiel Cole, Sofie Rutsaert, Wim Trypsteen, Linos Vandekerckhove
Software Mentions: 2
Published: over 6 years ago
10.3390/v12060586
Are We Ready for NGS HIV Drug Resistance Testing? The Second “Winnipeg Consensus” SymposiumCited by: 15
Author(s): Hezhao Ji, Paul Sandstrom, Roger Paredes, P. Richard Harrigan, Chanson J. Brumme, Santiago Ríos, Marc Noguera-Julián, Neil Parkin, Rami Kantor
Software Mentions: 1
Published: about 6 years ago