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Projects: pypi: SNPmatch

https://packages.ecosyste.ms/registries/pypi.org/packages/SNPmatch

A simple python library to identify the most likely strain given the SNPs for a sample
14 versions
Latest release: over 6 years ago
35 downloads last month

Enhanced Analysis
Educational Contributors: rahul.pisupati@gmi.oeaw.ac.at rahul.pisupati@login1.ice.gmi.oeaw.ac.at rahul.pisupati@login0.ice.gmi.oeaw.ac.at
Repository Activity:
Repository Owner: GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH (organization) Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +10 Science terms in README
    5 scientific terms found in README
  • +20 DOI references
    2 DOI references found in README
  • +6 Academic links
    1 academic links found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning SNPmatch 3

10.1016/j.cell.2019.07.038
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana
Cited by: 237
Author(s): Anna-Lena Van de Weyer, Freddy Monteiro, Oliver J. Furzer, Marc T. Nishimura, Volkan Çevik, Kamil Witek, Jonathan D. G. Jones, Jeffery L. Dangl, Detlef Weigel, Felix Bemm
Software Mentions: 23
Published: almost 7 years ago
10.1186/s12864-017-4067-x
Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica
Cited by: 7
Author(s): Keisha D. Carlson, Noe Fernandez‐Pozo, Aureliano Bombarely, Rahul Pisupati, Lukas A. Mueller, Andreas Madlung
Software Mentions: 2
Published: almost 9 years ago
10.1038/sdata.2017.184
Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples
Cited by: 25
Author(s): Rahul Pisupati, Ilka Reichardt, Ümit Seren, Pamela Korte, Viktoria Nizhynska, Envel Kerdaffrec, Kristina Uzunova, Fernando A. Rabanal, Daniele Filiault, Magnus Nordborg
Software Mentions: 2
Published: over 8 years ago