Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: glmnet

https://packages.ecosyste.ms/registries/pypi.org/packages/glmnet

Python wrapper for glmnet
5 versions
Latest release: almost 4 years ago
3 dependent packages
3,992 downloads last month

Papers Mentioning glmnet 1,607

10.1186/s12859-015-0537-9
A strategy to build and validate a prognostic biomarker model based on RT-qPCR gene expression and clinical covariates
Cited by: 6
Author(s): Maud Tournoud, Audrey Larue, Marie-Angélique Cazalis, Fabienne Venet, Alexandre Pachot, Guillaume Monneret, Alain Lepape, Jean‐Baptiste Veyrieras
Software Mentions: 9
Published: about 9 years ago
10.1038/s41598-021-96095-z
Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
Cited by: 1
Author(s): Laura G. Antiga, Lode Sibbens, Yasmina Abakkouy, Ronny Decorte, Wouter Van Den Bogaert, Wim Van de Voorde
Software Mentions: 9
Published: almost 3 years ago
10.1038/s41598-020-72018-2
Spatial structure, parameter nonlinearity, and intelligent algorithms in constructing pedotransfer functions from large-scale soil legacy data
Cited by: 6
Author(s): Poulamee Chakraborty, Bhabani S. Das, Hitesh B. Vasava, Niranjan Panigrahi, Priyabrata Santra
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-020-76315-8
Robustly forecasting maize yields in Tanzania based on climatic predictors
Cited by: 18
Author(s): Rahel Laudien, Bernhard Schauberger, David Makowski, Christoph Gornott
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2021.616976
A Nomogram for Preoperative Estimation of Microvascular Invasion Risk in Hepatocellular Carcinoma: Single-Center Analyses With Internal Validation
Cited by: 5
Author(s): Jiarui Yang, Shuguang Zhu, Juanjuan Yong, Xia Long, Xiangjun Qian, Jiawei Yang, Xueqiao Hu, Yuxuan Li, Chusi Wang, Wenguang Peng, Lei Zhang, Meihai Deng, Weidong Pan
Software Mentions: 9
Published: about 3 years ago
10.3389/fonc.2021.711020
Integration of scRNA-Seq and Bulk RNA-Seq to Analyse the Heterogeneity of Ovarian Cancer Immune Cells and Establish a Molecular Risk Model
Cited by: 37
Author(s): Leilei Liang, Jing Yu, Jian Li, Ning Li, Jing Liu, Lin Xiu, Jia Zeng, Tiantian Wang, Lingying Wu
Software Mentions: 9
Published: over 2 years ago
10.18632/aging.104064
Clinical and prognostic pan-cancer analysis of m6A RNA methylation regulators in four types of endocrine system tumors
Cited by: 29
Author(s): Kai Li, Hui Luo, Hui Luo, Xiao Zhu
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2020.626912
Molecular Subtypes and CD4+ Memory T Cell-Based Signature Associated With Clinical Outcomes in Gastric Cancer
Cited by: 15
Author(s): Zhikun Ning, Cegui Hu, Chao Huang, Jiang Liu, Taicheng Zhou, Zhen Zong
Software Mentions: 9
Published: about 3 years ago
10.1038/s41598-019-39019-2
Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data
Cited by: 10
Author(s): Marcela Franco, Ashwini Jeggari, Sylvain Peuget, Franziska Böttger, Galina Selivanova, Andrey Alexeyenko
Software Mentions: 9
Published: about 5 years ago
10.1038/s41598-019-55563-3
RETRACTED ARTICLE: The diagnostic nomogram of platelet-based score models for hepatic alveolar echinococcosis and atypical liver cancer
Cited by: 4
Author(s): Qiancheng Du, Yanyan Wang, Shihao Guan, Chenliang Hu, Mengxuan Li, Ling Zhou, Mengzhao Zhang, Yichong Chen, Xuepeng Mei, Jian Sun, Ying Zhou
Software Mentions: 9
Published: over 4 years ago
10.18632/aging.202748
Development and validation of routine clinical laboratory data derived marker-based nomograms for the prediction of 5-year graft survival in kidney transplant recipients
Cited by: 0
Author(s): Yamei Li, Yan Lin, Yang Li, Zhengli Wan, Yang Bai, Xianding Wang, Shumeng Hu, Xiaojuan Wu, Cuili Yang, Jiwen Fan, Hong‐Xi Xu, Lanlan Wang, Ying Shi
Software Mentions: 9
Published: about 3 years ago
10.3389/fcell.2021.718624
Identification of a Novel Prognostic Gene Signature From the Immune Cell Infiltration Landscape of Osteosarcoma
Cited by: 15
Author(s): Lei Fan, Jingtao Ru, Tao Liu, Chi Ma
Software Mentions: 9
Published: over 2 years ago
10.1186/s13059-019-1697-0
WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants
Cited by: 10
Author(s): Laurent Gentzbittel, Cécile Ben, Mélanie Mazurier, Min-Gyoung Shin, Todd C. Lorenz, Martina Rickauer, Paul Marjoram, Sergey V. Nuzhdin, Tatiana V. Tatarinova
Software Mentions: 9
Published: almost 5 years ago
10.1186/s12916-020-01826-0
Development and validation of a lifestyle-based model for colorectal cancer risk prediction: the LiFeCRC score
Cited by: 33
Author(s): Krasimira Aleksandrova, Robin Reichmann, Rudolf Kaaks, Mazda Jenab, H. Bas Bueno-de-Mesquita, Christina C. Dahm, Anne Kirstine Eriksen, Anne Tjønneland, Fanny Artaud, Marie Christine Boutron-Ruault, Gianluca Severi, Anika Hüsing, Antonia Trichopoulou, Anna Karakatsani, Eleni Peppa, Salvatore Panico, Giovanna Masala, Sara Grioni, Carlotta Sacerdote, Rosario Tumino, Sjoerd G. Elias, Anne M. May, Kristin Benjaminsen Borch, Torkjel M. Sandanger, Guri Skeie, María José Sánchez, José María Huerta, Núria Sala, Aurelio Barricarte Gurrea, J. Ramón Quiŕos, Pilar Amiano, Jonna Berntsson, Isabel Drake, Bethany Van Guelpen, Sophia Harlid, Tim Key, Elisabete Weiderpass, Elom K. Aglago, Amanda J. Cross, Konstantinos K. Tsilidis, Elio Riboli, Marc J. Gunter
Software Mentions: 9
Published: over 3 years ago
10.3389/fcell.2021.653240
CARD-Associated Risk Score Features the Immune Landscape and Predicts the Responsiveness to Anti-PD-1 Therapy in IDH Wild-Type Gliomas
Cited by: 2
Author(s): De-Pei Li, Wanming Hu, Xiaoping Lin, Ji Zhang, Zhenqiang He, Sheng Zhong, Xiaozhong Wen, Peiyu Zhang, Xiaobing Jiang, Hao Duan, Chengcheng Guo, Jian Wang, Jing Zeng, Zhongping Chen, Yonggao Mou, Ke Sai
Software Mentions: 9
Published: about 3 years ago
10.1155/2020/9762067
14-CpG-Based Signature Improves the Prognosis Prediction of Hepatocellular Carcinoma Patients
Cited by: 8
Author(s): Hongye Jiang, Gang Ning, Yensheng Wang, Weibiao Lv
Software Mentions: 9
Published: over 4 years ago
10.1186/s12859-016-1149-8
Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selection
Cited by: 27
Author(s): Andreas Mayr, Benjamin Hofner, Matthias Schmid
Software Mentions: 9
Published: almost 8 years ago
10.1186/s12935-019-0846-6
Integrated analysis reveals potential long non-coding RNA biomarkers and their potential biological functions for disease free survival in gastric cancer patients
Cited by: 34
Author(s): Ching‐Li Cheng, Qicai Wang, Mengting Zhu, Kelong Liu, Zhiqiao Zhang
Software Mentions: 9
Published: about 5 years ago
10.3389/fbioe.2019.00257
The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone Metastasis
Cited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: over 4 years ago
10.1186/s12957-020-02025-0
Development of a novel prognostic score combining clinicopathologic variables, gene expression, and mutation profiles for lung adenocarcinoma
Cited by: 4
Author(s): Guofeng Li, Guangsuo Wang, Yanhua Guo, Shixuan Li, Youlong Zhang, Jialu Li, Bin Peng
Software Mentions: 9
Published: over 3 years ago
10.1186/s12935-021-02215-0
Identification of the prognostic value of a 2-gene signature of the WNT gene family in UCEC using bioinformatics and real-world data
Cited by: 9
Author(s): Yuexin Hu, Mingjun Zheng, Dandan Zhang, Rui Gou, Ouxuan Liu, Shuang Wang, Bei Lin
Software Mentions: 9
Published: over 2 years ago
10.1186/s12935-020-1113-6
Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma
Cited by: 81
Author(s): Zedan Zhang, Enyu Lin, Hongkai Zhuang, Lu Xie, Xiaoqiang Feng, Jiumin Liu, Yuming Yu
Software Mentions: 9
Published: over 4 years ago
10.1186/s12935-020-01230-x
A Gleason score-related outcome model for human prostate cancer: a comprehensive study based on weighted gene co-expression network analysis
Cited by: 19
Author(s): Yongzhi Wang, Zhonghua Yang
Software Mentions: 9
Published: about 4 years ago
10.1186/gb-2014-15-3-r47
Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines
Cited by: 571
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 9
Published: about 10 years ago
10.1097/MD.0000000000020115
The establishment and evaluation of a new model for the prediction of Children B-ALL based on TARGET
Cited by: 0
Author(s): Xiangyu Gao, Li Chen
Software Mentions: 9
Published: about 4 years ago
10.1111/eva.13296
Ageing European lobsters (<i>Homarus gammarus</i>) using DNA methylation of evolutionarily conserved ribosomal DNA
Cited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: over 2 years ago
10.3389/fmed.2021.604694
A Simple-to-Use Web-Based Calculator for Survival Prediction in Acute Respiratory Distress Syndrome
Cited by: 0
Author(s): Yong Liu, Jian Liu, Liang Huang
Software Mentions: 9
Published: over 3 years ago
10.15252/msb.20188190
High‐throughput discovery of functional disordered regions: investigation of transactivation domains
Cited by: 121
Author(s): Charles N. J. Ravarani, Tamara Y. Erkina, Greet De Baets, Daniel C Dudman, Alexandre M. Erkine, M. Madan Babu
Software Mentions: 9
Published: about 6 years ago
10.1186/s40478-019-0797-0
Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers
Cited by: 36
Author(s): Dennis W. Dickson, Matthew Baker, Jazmyne L. Jackson, Mariely DeJesus-Hernandez, Ni Cole A. Finch, Shulan Tian, Michael G. Heckman, Cyril Pottier, Tania F. Gendron, Melissa E. Murray, Yingxue Ren, Joseph S. Reddy, Neill R. Graff‐Radford, Bradley F. Boeve, Ronald C. Petersen, David S. Knopman, Keith A. Josephs, Leonard Petrucelli, Björn Oskarsson, John W. Sheppard, Yan W. Asmann, Rosa Rademakers, Marka van Blitterswijk
Software Mentions: 9
Published: over 4 years ago
10.1186/s13550-021-00809-3
Preselection of robust radiomic features does not improve outcome modelling in non-small cell lung cancer based on clinical routine FDG-PET imaging
Cited by: 7
Author(s): Carol Oliveira, Florian Amstutz, Diem Vuong, Marta Bogowicz, Martin Hüllner, R. E. Forster, Lucas Basler, Christina Schröder, Eric Innocents Eboulet, Miklos Pless, Sandra Thierstein, Solange Peters, Sven Hillinger, Stephanie Tanadini‐Lang, Matthias Gückenberger
Software Mentions: 9
Published: over 2 years ago
10.3389/fphar.2021.746910
Spermine-Related DNA Hypermethylation and Elevated Expression of Genes for Collagen Formation are Susceptible Factors for Chemotherapy-Induced Hand-Foot Syndrome in Chinese Colorectal Cancer Patients
Cited by: 3
Author(s): Mingming Li, Jiani Chen, Shaoqun Liu, Xiaomeng Sun, Huilin Xu, Qianmin Gao, Xintao Chen, Chaowen Xi, Doudou Huang, Yi Deng, Feng zhang, Shouhong Gao, Shi Qiu, Xin Tao, Jingwen Zhai, Hua Wei, Houshan Yao, Wansheng Chen
Software Mentions: 9
Published: over 2 years ago
10.3389/fgene.2020.570325
Construction of a Nomogram Based on a Hypoxia-Related lncRNA Signature to Improve the Prediction of Gastric Cancer Prognosis
Cited by: 29
Author(s): Qian Chen, Lang Hu, Kaihua Chen
Software Mentions: 9
Published: over 3 years ago
10.1186/s12014-017-9163-z
Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects
Cited by: 10
Author(s): Lisa J. Croner, Roslyn Dillon, Athit Kao, Stefanie N. Kairs, Ryan W. Benz, Ib Jarle Christensen, Hans Jørgen Nielsen, John E. Blume, Bruce E. Wilcox
Software Mentions: 9
Published: almost 7 years ago
10.1155/2021/5510780
A Five-Gene Prognostic Nomogram Predicting Disease-Free Survival of Differentiated Thyroid Cancer
Cited by: 5
Author(s): Pan Ruchong, Hai-ping Tang, Xiang Wang
Software Mentions: 9
Published: almost 3 years ago
10.1155/2020/8816070
Progressive and Prognostic Performance of an Extracellular Matrix-Receptor Interaction Signature in Gastric Cancer
Cited by: 20
Author(s): Xiangchou Yang, Liping Chen, Yuting Mao, Zijing Hu, Min He
Software Mentions: 9
Published: over 3 years ago
10.1186/s12885-021-08328-z
The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcoma
Cited by: 16
Author(s): Lijiang He, Hainan Yang, Jingshan Huang
Software Mentions: 9
Published: almost 3 years ago
10.1042/BSR20201604
Novel prognostic prediction model constructed through machine learning on the basis of methylation-driven genes in kidney renal clear cell carcinoma
Cited by: 11
Author(s): Weihao Tang, Ying Cao, Xiaoke Ma
Software Mentions: 9
Published: almost 4 years ago
10.1042/BSR20201001
Identification of prognostic and metastasis-related alternative splicing signatures in hepatocellular carcinoma
Cited by: 11
Author(s): Runzhi Huang, Gaili Yan, Hao Sun, Jie Zhang, Dianwen Song, Rui Kong, Penghui Yan, Peng Hu, Aiqing Xie, Siqiao Wang, Juanwei Zhuang, Huabin Yin, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: almost 4 years ago
10.3389/fgene.2021.610291
RNA-Binding Proteins Play an Important Role in the Prognosis of Patients With Testicular Germ Cell Tumor
Cited by: 7
Author(s): Liangyu Yao, Rong Cong, Chengjian Ji, Xiang Zhou, Jiaochen Luan, Xuhui Meng, Ninghong Song
Software Mentions: 9
Published: about 3 years ago
10.3389/fgene.2019.00828
The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic Melanoma
Cited by: 19
Author(s): Runzhi Huang, Zhiwei Zeng, Guangyu Li, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Ruizhi Chang, Xu Zhang, Jie Zhang, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: over 4 years ago
10.1155/2021/8864436
Identification and Validation of a Tumor Microenvironment-Related Gene Signature for Prognostic Prediction in Advanced-Stage Non-Small-Cell Lung Cancer
Cited by: 10
Author(s): Xuening Zhang, Xiaoguang Shi, Hao Zhao, Xiaocan Jia, Yongli Yang
Software Mentions: 9
Published: about 3 years ago
10.1042/BSR20201820
Immune-related miRNA signature identifies prognosis and immune landscape in head and neck squamous cell carcinomas
Cited by: 6
Author(s): Bo Ma, Hui Li, Jie Qiao, Tao Meng, Riyue Yu
Software Mentions: 9
Published: over 3 years ago
10.1186/s12885-020-06882-6
Inferring the role of the microbiome on survival in patients treated with immune checkpoint inhibitors: causal modeling, timing, and classes of concomitant medications
Cited by: 39
Author(s): Daniel Spakowicz, Rebecca Hoyd, Mitchell Muniak, Marium Husain, James S. Bassett, Lei Wang, Gabriel Tinoco, Sandip Patel, Jarred Burkart, Abdul Miah, Mingjia Li, Andrew Johns, Madison Grogan, David P. Carbone, Claire F. Verschraegen, Kari Kendra, Gregory A. Otterson, Lang Li, Carolyn J. Presley, Dwight H. Owen
Software Mentions: 9
Published: about 4 years ago
10.18632/aging.103508
Radiomics-based prediction of survival in patients with head and neck squamous cell carcinoma based on pre- and post-treatment 18F-PET/CT
Cited by: 26
Author(s): Zheran Liu, Yuan Cao, Wei Diao, Yue Cheng, Zhiyun Jia, Xingchen Peng
Software Mentions: 9
Published: almost 4 years ago
10.3389/fonc.2020.578895
Radiomics Feature Activation Maps as a New Tool for Signature Interpretability
Cited by: 17
Author(s): Diem Vuong, Stephanie Tanadini‐Lang, Ze Wu, Robert J. Marks, Jan Unkelbach, Sven Hillinger, Eric Innocents Eboulet, Sandra Thierstein, Solange Peters, Miklos Pless, Matthias Gückenberger, Marta Bogowicz
Software Mentions: 9
Published: over 3 years ago
10.1155/2019/5076467
Prediction of the Outcome for Patients with Glioblastoma with lncRNA Expression Profiles
Cited by: 4
Author(s): Qinglin Liu, Changjing Qi, Gang Li, Wandong Su
Software Mentions: 9
Published: over 4 years ago
10.1186/s12885-021-08470-8
Alternative splicing associated with cancer stemness in kidney renal clear cell carcinoma
Cited by: 12
Author(s): Lixing Xiao, Guoying Zou, Rui Cheng, Pingping Wang, Kexin Ma, Huimin Cao, Wenyang Zhou, Xiyun Jin, Zhaochun Xu, Yan Huang, Xiaoyu Lin, Huan Nie, Qinghua Jiang
Software Mentions: 9
Published: almost 3 years ago
10.3390/molecules25071576
Model Optimization for the Prediction of Red Wine Phenolic Compounds Using Ultraviolet–Visible Spectra
Cited by: 4
Author(s): Chris Beaver, Thomas S. Collins, James F. Harbertson
Software Mentions: 9
Published: about 4 years ago
10.3389/fonc.2021.624395
Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human Cancers
Cited by: 12
Author(s): Xiaonan Liu, Pei Wang, Xufei Teng, Zhang Zhang, Shuhui Song
Software Mentions: 9
Published: about 3 years ago
10.3389/fgene.2021.691465
ARG2, MAP4K5 and TSTA3 as Diagnostic Markers of Steroid-Induced Osteonecrosis of the Femoral Head and Their Correlation With Immune Infiltration
Cited by: 10
Author(s): Rongguo Yu, Jiayu Zhang, Youguang Zhuo, Hong Xu, Jie Ye, Susu Tang, Nannan Liu, Yiyuan Zhang
Software Mentions: 9
Published: almost 3 years ago
10.18632/aging.203390
Comprehensive analysis of new prognostic signature based on ferroptosis-related genes in clear cell renal cell carcinoma
Cited by: 8
Author(s): Bin Zheng, Zhihong Niu, Shubin Si, Guiting Zhao, Jianwei Wang, Zhongshun Yao, Fajuan Cheng
Software Mentions: 9
Published: almost 3 years ago
10.1155/2021/6657397
Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning Algorithms
Cited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: over 3 years ago
10.18632/aging.203455
Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUAD
Cited by: 9
Author(s): Hang Chen, Wei Shen, Saiqi Ni, Menglu Sang, Shibo Wu, Yinyu Mu, Kaitai Liu, Ni Li, Linwen Zhu, Guodong Xu
Software Mentions: 9
Published: over 2 years ago
10.1186/s13059-018-1414-4
QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
Cited by: 140
Author(s): Kevin C.H. Ha, Benjamin J. Blencowe, Quaid Morris
Software Mentions: 9
Published: about 6 years ago
10.3389/fgene.2021.661988
Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: almost 3 years ago
10.1080/21655979.2020.1822715
A novel prognostic models for identifying the risk of hepatocellular carcinoma based on epithelial-mesenchymal transition-associated genes
Cited by: 15
Author(s): Chen Xiong, Guifu Wang, Dou‐Sheng Bai
Software Mentions: 9
Published: over 4 years ago
10.1111/jcmm.14767
An EMT‐related gene signature for the prognosis of human bladder cancer
Cited by: 113
Author(s): Rui Cao, Lushun Yuan, Bo Ma, Gang Wang, Wei Qiu, Ye Tian
Software Mentions: 9
Published: over 4 years ago
10.1093/jamia/ocab068
Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adults
Cited by: 26
Author(s): Matthew Chun, Robert Clarke, Benjamin J. Cairns, David A. Clifton, Derrick Bennett, Yiping Chen, Yu Guo, Pei Pei, Jun Lv, Canqing Yu, Ling Yang, Liming Li, Zhengming Chen, Tingting Zhu
Software Mentions: 9
Published: about 3 years ago
10.1038/srep32976
Disease-specific classification using deconvoluted whole blood gene expression
Cited by: 17
Author(s): Li Wang, William K. Oh, Jun Zhu
Software Mentions: 8
Published: over 7 years ago
10.1001/jamanetworkopen.2019.4573
Development and Validation of an Esophageal Squamous Cell Carcinoma Detection Model by Large-Scale MicroRNA Profiling
Cited by: 51
Author(s): Kazuki Sudo, Ken Kato, Juntaro Matsuzaki, Narikazu Boku, Seiichiro Abe, Yutaka Saito, Hiroyuki Daiko, Satoko Takizawa, Yasumichi Aoki, Hiromi Sanada, Shumpei Niida, Fumitaka Takeshita, Takahiro Fukuda, Takahiro Ochiya
Software Mentions: 8
Published: almost 5 years ago
10.1001/jamanetworkopen.2019.16953
Assessment of the Diagnostic Utility of Serum MicroRNA Classification in Patients With Diffuse Glioma
Cited by: 25
Author(s): Makoto Ohno, Juntaro Matsuzaki, Junpei Kawauchi, Yasumichi Aoki, Junichiro Miura, Satoko Takizawa, Ken Kato, Hiromi Sanada, Yuko Matsushita, Manabu Takahashi, Yasuji Miyakita, Koichi Ichimura, Yoshitaka Narita, Takahiro Ochiya
Software Mentions: 8
Published: over 4 years ago
10.1172/jci.insight.138751
In utero human intestine harbors unique metabolome, including bacterial metabolites
Cited by: 27
Author(s): Yujia Li, Jessica Toothaker, Shira Ben-Simon, Lital Ozeri, Ron Schweitzer, Blake McCourt, Collin C. McCourt, Lael Werner, Scott B. Snapper, Dror S. Shouval, Soliman Khatib, Omry Koren, Sameer Agnihorti, George C. Tseng, Liza Konnikova
Software Mentions: 8
Published: over 3 years ago
10.7150/jca.49175
Biological functions and prognostic value of RNA Binding Proteins in clear cell Renal Cell Carcinoma
Cited by: 6
Author(s): Zhenpeng Zhu, Anbang He, Lanruo Lin, Chunru Xu, Tianyu Cai, Lin Jian
Software Mentions: 8
Published: over 4 years ago
10.7150/jca.49266
Establishment of the Prognostic Index Reflecting Tumor Immune Microenvironment of Lung Adenocarcinoma Based on Metabolism-Related Genes
Cited by: 13
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 8
Published: over 4 years ago
10.1111/jcmm.15601
Novel gene signatures for prognosis prediction in ovarian cancer
Cited by: 25
Author(s): Mingyang Bao, Lihua Zhang, Yue‐Qing Hu
Software Mentions: 8
Published: almost 4 years ago
10.1007/s10278-018-0154-z
Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers
Cited by: 5
Author(s): Dmytro Lituiev, Hari Trivedi, Maryam Panahiazar, Beau Norgeot, Youngho Seo, Benjamin L. Franc, Roy Harnish, Michael Kawczynski, Dexter Hadley
Software Mentions: 8
Published: over 5 years ago
10.1126/sciadv.abd3311
Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
Cited by: 64
Author(s): Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, KM Keller, Karin Langenberg-Ververgaert, Philip Lijnzaad, Thanasis Margaritis, Frank C. P. Holstege, Michelle L. Tas, Marc H. W. A. Wijnen, Max M. van Noesel, Ignacio del Valle, Giuseppe Barone, Reinier van der Linden, Catriona Duncan, John Anderson, John C. Achermann, Muzlifah Haniffa, Sarah A. Teichmann, Dyanne Rampling, Neil J. Sebire, Xiaoling He, Ronald R. de Krijger, Roger A. Barker, Kerstin B. Meyer, Ömer Bayraktar, Karin Straathof, Jan J. Molenaar, Sam Behjati
Software Mentions: 8
Published: over 3 years ago
10.1038/s41389-019-0157-8
DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
Cited by: 119
Author(s): Feng Gao, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang
Software Mentions: 8
Published: almost 5 years ago
10.1002/cam4.4156
Comprehensive analysis of a new prognosis signature based on histone deacetylases in clear cell renal cell carcinoma
Cited by: 6
Author(s): Fajuan Cheng, Bin Zheng, Jianwei Wang, Guiting Zhao, Zhongshun Yao, Zhihong Niu
Software Mentions: 8
Published: almost 3 years ago
10.7717/peerj.7942
A genomic-clinical nomogram predicting recurrence-free survival for patients diagnosed with hepatocellular carcinoma
Cited by: 6
Author(s): Junjie Kong, Tao Wang, Shu Shen, Zifei Zhang, Xianwei Yang, Wentao Wang
Software Mentions: 8
Published: over 4 years ago
10.3389/fonc.2020.523327
The Impact of Preoperative Radiomics Signature on the Survival of Breast Cancer Patients With Residual Tumors After NAC
Cited by: 4
Author(s): Ling Zhang, Xinhua Jiang, Xiaoming Xie, Yaopan Wu, Shaoquan Zheng, Wenwen Tian, Xinhua Xie, Li Li
Software Mentions: 8
Published: over 3 years ago
10.1007/s00122-017-3030-1
Predictive ability of genomic selection models in a multi-population perennial ryegrass training set using genotyping-by-sequencing
Cited by: 49
Author(s): Marty J. Faville, Siva Ganesh, Mingshu Cao, M. Z. Z. Jahufer, Timothy P. Bilton, H. S. Easton, Douglas L. Ryan, Jason A. K. Trethewey, M. P. Rolston, Andrew G. Griffiths, Roger Moraga, Casey Flay, Joana Schmidt, Rachel Tan, Brent Barrett
Software Mentions: 8
Published: over 6 years ago
10.1101/2020.11.25.20235150
T cell and antibody functional correlates of severe COVID-19
Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: over 3 years ago
10.3389/fonc.2020.558596
Development and Validation of Autophagy-Related Gene Signature and Nomogram for Predicting Survival in Oral Squamous Cell Carcinoma
Cited by: 25
Author(s): Chen Hou, Hao Cai, Yue Zhu, Shuojin Huang, Song Fan, Jinsong Hou
Software Mentions: 8
Published: over 3 years ago
10.3389/fonc.2021.561763
Predict Colon Cancer by Pairing Plasma miRNAs: Establishment of a Normalizer-Free, Cross-Platform Model
Cited by: 3
Author(s): Dashan Qin, Qingdong Guo, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 8
Published: about 3 years ago
10.1186/s12884-018-1971-2
Comparison of logistic regression with machine learning methods for the prediction of fetal growth abnormalities: a retrospective cohort study
Cited by: 70
Author(s): Stefan Kuhle, Bryan Maguire, Hongqun Zhang, David C. Hamilton, Alexander C. Allen, K.S. Joseph, Victoria M. Allen
Software Mentions: 8
Published: almost 6 years ago
10.3389/fonc.2019.01310
Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma
Cited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: over 4 years ago
10.1002/cam4.3655
Immune landscape and a promising immune prognostic model associated with TP53 in early‐stage lung adenocarcinoma
Cited by: 17
Author(s): Chia-Chien Wu, Rong Xiang, Lin Wei
Software Mentions: 8
Published: over 3 years ago
10.3389/fonc.2019.01314
An Immune-Related Signature Predicts Survival in Patients With Lung Adenocarcinoma
Cited by: 94
Author(s): Minghui Zhang, Kaibin Zhu, Haihong Pu, Zhuozhong Wang, Hongli Zhao, Jinfeng Zhang, Yan Wang
Software Mentions: 8
Published: over 4 years ago
10.1186/s13643-019-0942-7
Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error
Cited by: 86
Author(s): Alexandra Bannach‐Brown, Piotr Przybyła, James Thomas, Andrew S.C. Rice, Sophia Ananiadou, Jing Liao, Malcolm Macleod
Software Mentions: 8
Published: over 5 years ago
10.1186/s12859-020-03618-y
Accounting for grouped predictor variables or pathways in high-dimensional penalized Cox regression models
Cited by: 11
Author(s): Shaima Belhechmi, Riccardo De Bin, Federico Rotolo, Stefan Michiels
Software Mentions: 8
Published: almost 4 years ago
10.1038/s41598-021-94732-1
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Cited by: 22
Author(s): Tanya Grancharova, Kaytlyn A. Gerbin, Alexander Rosenberg, Charles M. Roco, Joy Arakaki, Colette M DeLizo, Stephanie Q. Dinh, Rory Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane
Software Mentions: 8
Published: almost 3 years ago
10.7717/peerj.10682
Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis
Cited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: about 3 years ago
10.1038/s41598-021-85680-x
A 14-gene gemcitabine resistance gene signature is significantly associated with the prognosis of pancreatic cancer patients
Cited by: 9
Author(s): Xing Wei, Xiaochong Zhou, Yun Zhao, Yao He, Zhen Weng, Chunfang Xu
Software Mentions: 8
Published: about 3 years ago
10.7717/peerj.11599
A seven-lncRNA signature for predicting Ewing’s sarcoma
Cited by: 8
Author(s): Zhihui Chen, Xinyu Wang, Guozhu Wang, Bin Xiao, Zhe Ma, Hongliang Huo, Weiwei Li
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2021.616133
Analysis of Autophagy-Related Signatures Identified Two Distinct Subtypes for Evaluating the Tumor Immune Microenvironment and Predicting Prognosis in Ovarian Cancer
Cited by: 11
Author(s): Xingyu Chen, Hua Lan, Dong He, Zhanwang Wang, Runshi Xu, Jing Yuan, Mengqing Xiao, Yao Zhang, Lian Gong, Songshu Xiao, Ke Cao
Software Mentions: 8
Published: about 3 years ago
10.1038/s41598-020-75541-4
Stromal microenvironment promoted infiltration in esophageal adenocarcinoma and squamous cell carcinoma: a multi-cohort gene-based analysis
Cited by: 6
Author(s): Jiali Li, Zhao-Yi Zeng, Xueping Jiang, Nannan Zhang, Yanping Gao, Yuan Luo, Wenjie Sun, Shuying Li, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 8
Published: over 3 years ago
10.3389/fcell.2021.681745
Comprehensive Analysis of the Immune Infiltrates and PD-L1 of m6A RNA Methylation Regulators in Hepatocellular Carcinoma
Cited by: 9
Author(s): Yali Xu, Xueling He, Junjian Deng, Lin Xiong, Yue Li, Xiaoyu Zhang, Wenliang Chen, Xin Liu, Ximing Xu
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2019.01243
Identification of Subtype-Specific Three-Gene Signature for Prognostic Prediction in Diffuse Type Gastric Cancer
Cited by: 12
Author(s): Bowen Bao, Chunlei Zheng, Bowen Yang, Yue Jin, Kezuo Hou, Zhi Li, Xueying Zheng, Shitong Yu, Xiaojie Zhang, Yibo Fan, Xiujuan Qu, Yunpeng Liu, Xiaofang Che
Software Mentions: 8
Published: over 4 years ago
10.1038/s41598-021-97090-0
Prognostic nomogram for predicting 5-year overall survival in Chinese patients with high-grade osteosarcoma
Cited by: 4
Author(s): Zhihong Yao, Zunxian Tan, Jifei Yang, Yihao Yang, Cao Wang, Jiaxiang Chen, Yanan Zhu, Tiying Wang, Lei Han, Lin Zhu, Zuozhang Yang
Software Mentions: 8
Published: over 2 years ago
10.1038/s41598-019-48746-5
Gene Expression Predicts Histological Severity and Reveals Distinct Molecular Profiles of Nonalcoholic Fatty Liver Disease
Cited by: 93
Author(s): Stephen A. Hoang, Abdul M. Oseini, Ryan E. Feaver, Banumathi K. Cole, Amon Asgharpour, Robert Vincent, Mohammad Shadab Siddiqui, Mark Lawson, Nathan Day, Justin M. Taylor, Brian R. Wamhoff, Faridoddin Mirshahi, Melissa J. Contos, Michael O. Idowu, Arun J. Sanyal
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0222024
Serum microRNA-based prediction of responsiveness to eribulin in metastatic breast cancer
Cited by: 21
Author(s): Natsuko Satomi-Tsushita, Akihiko Shimomura, Juntaro Matsuzaki, Yusuke Yamamoto, Junpei Kawauchi, Satoko Takizawa, Yasumichi Aoki, Hiromi Sanada, Ken Kato, Chikako Shimizu, Takahiro Ochiya, Kenji Takagi
Software Mentions: 8
Published: over 4 years ago
10.3389/fcell.2021.653357
Combination of Immune-Related Genomic Alterations Reveals Immune Characterization and Prediction of Different Prognostic Risks in Ovarian Cancer
Cited by: 2
Author(s): Xibo Zhao, Shanshan Cong, Qiuyan Guo, Yan Cheng, Tian Liang, Jing Wang, Guangmei Zhang
Software Mentions: 8
Published: about 3 years ago
10.1038/s41598-020-61643-6
Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer
Cited by: 7
Author(s): Xia Li, Paul Van Hummelen, Matthew Kubit, Ho‐Joon Lee, John Bell, Susan M. Grimes, Christina Wood-Bouwens, Stephanie Greer, Tyler Barker, Derrick S. Haslem, James M. Ford, Gail Fulde, Hanlee P. Ji, Lincoln Nadauld
Software Mentions: 8
Published: about 4 years ago
10.3389/fnins.2021.613329
Integrated Transcriptional Profiling Analysis and Immune-Related Risk Model Construction for Intracranial Aneurysm Rupture
Cited by: 4
Author(s): Dezhi Shan, Xing Guo, Guozheng Yang, Zheng He, Rongrong Zhao, Hao Xue, Gang Li
Software Mentions: 8
Published: about 3 years ago
10.18632/aging.103707
A 12-immune cell signature to predict relapse and guide chemotherapy for stage II colorectal cancer
Cited by: 4
Author(s): Xianglong Tian, Xiaoqiang Zhu, Meng Wu, Shiguang Bai, Min Shi, Shihao Xiang, Zhao Chun-hua, Yugang Wang
Software Mentions: 8
Published: over 3 years ago
10.1186/s13059-020-02038-8
Personalized and graph genomes reveal missing signal in epigenomic data
Cited by: 25
Author(s): Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen, Guillaume Bourque
Software Mentions: 8
Published: almost 4 years ago
10.1038/s41598-021-97221-7
An interaction regression model for crop yield prediction
Cited by: 25
Author(s): Javad Ansarifar, Lizhi Wang, Sotirios Archontoulis
Software Mentions: 8
Published: over 2 years ago
10.1371/journal.pone.0242730
A comparison of penalised regression methods for informing the selection of predictive markers
Cited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: over 3 years ago
10.3389/fcvm.2020.586871
Predicting Diagnostic Gene Biomarkers Associated With Immune Infiltration in Patients With Acute Myocardial Infarction
Cited by: 64
Author(s): Enfa Zhao, Hang Xie, Yushun Zhang
Software Mentions: 8
Published: over 3 years ago