pypi: excel | Projects | Ecosyste.ms: Papers

10.3390/tropicalmed6010027

Identification, Distribution, and Habitat Suitability Models of Ixodid Tick Species in Cattle in Eastern Bhutan
Cited by: 10
Author(s): Jamyang Namgyal, Tim Lysyk, Isabelle Couloigner, Sylvia Checkley, Ratna B. Gurung, Tenzin Tenzin, Sithar Dorjee, Susan C. Cork
Software Mentions: 16
Published: almost 4 years ago

10.12688/f1000research.9501.2

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
Cited by: 693
Author(s): Aaron T. L. Lun, Davis J. McCarthy, John C. Marioni
Software Mentions: 12
Published: about 8 years ago

10.3389/fimmu.2018.02191

Single Cell RNA Sequencing Identifies HSPG2 and APLNR as Markers of Endothelial Cell Injury in Systemic Sclerosis Skin
Cited by: 48
Author(s): Sokratis A. Apostolidis, Giuseppina Stifano, Tracy Tabib, Lisa Rice, Christina Morse, Bashar Kahaleh, Robert Lafyatis
Software Mentions: 11
Published: about 6 years ago

10.1186/s40064-015-0795-z

Rapid publication-ready MS-Word tables for two-way ANOVA
Cited by: 56
Author(s): Houssein Assaad, Yongqing Hou, Lan Zhou, Raymond J. Carroll, Guoyao Wu
Software Mentions: 11
Published: almost 10 years ago

10.1186/1756-0500-4-546

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data
Cited by: 20
Author(s): Francesco Mancuso, Magda Montfort, Anna Carreras, Andreu Alibés, Guglielmo Roma
Software Mentions: 11
Published: almost 13 years ago

10.1186/s12864-019-6181-4

Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)
Cited by: 12
Author(s): Jianjun Fu, Wenbin Zhu, Lanmei Wang, Ming Luo, Fei Song, Zaijie Dong
Software Mentions: 10
Published: about 5 years ago

10.1371/journal.pone.0238160

Diagnostic and prognostic value of hematological and immunological markers in COVID-19 infection: A meta-analysis of 6320 patients
Cited by: 138
Author(s): Rami M. Elshazli, Eman A. Toraih, Abdelaziz Elgaml, Mohammed El‐Mowafy, Mohamed El-Mesery, Mohamed N. Amin, Mohammad Hussein, Mary Killackey, Manal S. Fawzy, Emad Kandil
Software Mentions: 10
Published: over 4 years ago

10.1186/s13059-021-02360-9

Role of epigenetics in unicellular to multicellular transition in Dictyostelium
Cited by: 8
Author(s): Simon Yuan Wang, Elizabeth A. Pollina, I‐Hao Wang, Lindsay K. Pino, Henry L. Bushnell, Ken Takashima, Colette Fritsche, George Sabin, Benjamin A. Garcia, Paul L. Greer, Eric Lieberman Greer
Software Mentions: 10
Published: over 3 years ago

10.1038/s42003-021-01945-1

Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression
Cited by: 5
Author(s): Andrea Cerase, Alexander N. Young, Nerea Ruiz, Andreas Buneß, Gabrielle M Sant, Mirjam Arnold, Monica Di Giacomo, Michela Ascolani, Manish Kumar, Andreas Hierholzer, Giuseppe Trigiante, Sarah Marzi, Philip Avner
Software Mentions: 9
Published: over 3 years ago

10.1186/s13643-019-0942-7

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error
Cited by: 86
Author(s): Alexandra Bannach‐Brown, Piotr Przybyła, James Thomas, Andrew S.C. Rice, Sophia Ananiadou, Jing Liao, Malcolm Macleod
Software Mentions: 8
Published: almost 6 years ago

10.1186/s13148-020-00931-4

TWIST1 DNA methylation is a cell marker of airway and parenchymal lung fibroblasts that are differentially methylated in asthma
Cited by: 7
Author(s): Rachel L. Clifford, Chen Xi Yang, Nick Fishbane, J. Patel, Julia L. MacIsaac, Lisa M. McEwen, Sean May, Marcos Castellanos-Uribe, Parameswaran Nair, Ma’en Obeidat, Michæl S. Kobor, Alan J. Knox, Tillie-Louise Hackett
Software Mentions: 8
Published: about 4 years ago

10.3389/fninf.2016.00036

A Multi-facetted Visual Analytics Tool for Exploratory Analysis of Human Brain and Function Datasets
Cited by: 18
Author(s): Diego A. Angulo, Cyril Schneider, James H. Oliver, Nathalie Charpak, José Tiberio Hernández
Software Mentions: 8
Published: about 8 years ago

10.3390/tropicalmed6010028

Knowledge and Perception of Rabies among School Children in Rabies Endemic Areas of South Bhutan
Cited by: 4
Author(s): Lungten Lungten, Sangay Rinchen, Tenzin Tenzin, Waraphon Phimpraphai, Michel De Garine‐Wichatitsky
Software Mentions: 8
Published: over 3 years ago

10.1186/2193-1801-3-474

Rapid publication-ready MS-Word tables for one-way ANOVA
Cited by: 131
Author(s): Houssein Assaad, Lan Zhou, Raymond J. Carroll, Guoyao Wu
Software Mentions: 8
Published: about 10 years ago

10.7554/eLife.58331

An essential role for MEF2C in the cortical response to loss of sleep in mice
Cited by: 19
Author(s): Theresa E. Bjorness, Ashwinikumar Kulkarni, Volodymyr Rybalchenko, Ayako Suzuki, Catherine Bridges, Adam J. Harrington, Christopher W. Cowan, Joseph S. Takahashi, Genevieve Konopka, Robert Greene
Software Mentions: 8
Published: about 4 years ago

10.1093/gigascience/giy167

SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis
Cited by: 2
Author(s): Samuel Blanck, Guillemette Marot
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pcbi.1008645

Ten simple rules for getting started with command-line bioinformatics
Cited by: 7
Author(s): Parice A. Brandies, Carolyn J. Hogg
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0210783

Development of a behavioural welfare assessment tool for routine use with captive elephants
Cited by: 39
Author(s): Lisa Yon, Ellen Williams, Naomi D. Harvey, Lucy Asher
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12859-021-03984-1

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies
Cited by: 6
Author(s): Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal K. Das, Paweł Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski
Software Mentions: 7
Published: almost 4 years ago

10.1186/1471-2105-15-69

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data
Cited by: 15
Author(s): Gan Zhang, Jianwu Wang, Nathan Salomonis, Jennifer Stowe, Gabriel G. Haddad, Andrew D. McCulloch, Ilkay Altıntaş, Alexander C. Zambon
Software Mentions: 7
Published: over 10 years ago

10.1186/s12862-019-1391-6

Joint effects of group sex-ratio and Wolbachia infection on female reproductive success in the terrestrial isopod Armadillidium vulgare
Cited by: 7
Author(s): Margot Fortin, Joël Meunier, Tiffany Laverré, Catherine Souty‐Grosset, Freddie-Jeanne Richard
Software Mentions: 7
Published: over 5 years ago

10.3390/life10090185

An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists
Cited by: 3
Author(s): Hamza Mbareche, Nathan Dumont-Leblond, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 7
Published: about 4 years ago

10.1186/s40168-020-00813-0

Disinfection exhibits systematic impacts on the drinking water microbiome
Cited by: 37
Author(s): Zihan Dai, Maria C. Sevillano-Rivera, Szymon T. Calus, Quyen Melina Bautista-de los Santos, A. Murat Eren, P.W.J.J. van der Wielen, Umer Zeeshan Ijaz, Ameet J. Pinto
Software Mentions: 7
Published: over 4 years ago

10.1186/s12918-016-0337-5

Quantifying differences in cell line population dynamics using CellPD
Cited by: 22
Author(s): Edwin F. Juarez, Roy Lau, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Edmond Jonckheere, David B. Agus, Shannon M. Mumenthaler, Paul Macklin
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-019-50260-7

Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: about 5 years ago

10.3389/fphys.2020.612598

Physiological Network From Anthropometric and Blood Test Biomarkers
Cited by: 7
Author(s): Antonio Barajas-Martínez, Elizabeth Ibarra-Coronado, Martha Patricia Sierra-Vargas, Ivette Cruz-Bautista, Paloma Almeda‐Valdés, Carlos A. Aguilar-Salinas, Rubén Fossión, Christopher R. Stephens, Claudia Vargas-Domínguez, Octavio Gamaliel Atzatzi-Aguilar, Yazmín Debray-García, Rogelio García-Torrentera, Karen Bobadilla, María Augusta Naranjo Meneses, Dulce Abril Mena Orozco, Cesar Lam, Vania Jocelyn Martínez-Garcés, Octavio A. Lecona, Arlex Marín-García, A. Frank, Ana Leonor Rivera
Software Mentions: 7
Published: almost 4 years ago

10.12688/f1000research.8452.2

The effects of an editor serving as one of the reviewers during the peer-review process
Cited by: 4
Author(s): Marco Giordan, Attila Csikász‐Nagy, Andy Collings, Federico Vaggi
Software Mentions: 7
Published: about 8 years ago

10.1038/s42003-020-0969-2

Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development
Cited by: 11
Author(s): Maria Victoria Gómez Roldán, Farhaj Izhaq, Marion Verdenaud, John Saviour Yaw Eleblu, Aimen Haraghi, Vivien Sommard, Pierre Chambrier, David Latrasse, Teddy Jégu, Moussa Benhamed, Judit Szécsi, Mohammed Bendahmane, Adnane Boualem, Abdelhafid Bendahmane
Software Mentions: 7
Published: over 4 years ago

10.1017/cts.2017.310

RRApp, a robust randomization app, for clinical and translational research
Cited by: 9
Author(s): Chengcheng Tu, Emma K. T. Benn
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0170691

Asphyxia in the Newborn: Evaluating the Accuracy of ICD Coding, Clinical Diagnosis and Reimbursement: Observational Study at a Swiss Tertiary Care Center on Routinely Collected Health Data from 2012-2015
Cited by: 18
Author(s): Olga Endrich, Carole Rimle, Marcel Zwahlen, Karen Triep, Luigi Raio, Mathias Nelle
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmicb.2020.575625

Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar
Cited by: 9
Author(s): Karelle Rheault, Denis Lachance, Marie-Josée Morency, Évelyne Thiffault, Marie Guittonny, Nathalie Isabel, Christine Martineau, Armand Séguin
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12866-019-1672-7

An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR
Cited by: 26
Author(s): Shi-Qi An, Miguel A. Valvano, Yu Yi, Jeremy S. Webb, Guillermo López–Campos
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13229-019-0263-7

A multifaceted approach for analyzing complex phenotypic data in rodent models of autism
Cited by: 5
Author(s): Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Sharmila Banerjee-Basu
Software Mentions: 6
Published: over 5 years ago

10.1007/s11306-020-1640-0

Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks
Cited by: 32
Author(s): Kevin Mendez, David Broadhurst, Stacey N. Reinke
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.dib.2019.104444

Data-based investigation on the performance of an independent gas turbine for electricity generation using real power measurements and other closely related parameters
Cited by: 1
Author(s): Ayodele Benjamin Esan, Vincent Ebhohime Ehiaguina, C. O. A. Awosope, Lanre Olatomiwa, Dickson Egbune
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-015-2346-y

CANEapp: a user-friendly application for automated next generation transcriptomic data analysis
Cited by: 12
Author(s): Dmitry Velmeshev, Patrick Lally, Marco Magistri, Mohammad Ali Faghihi
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12870-016-0729-0

Gene expression profiling of the green seed problem in Soybean
Cited by: 32
Author(s): Renake Nogueira Teixeira, Wilco Ligterink, J. de B. França Neto, Henk W. M. Hilhorst, Edvaldo Aparecido Amaral da Silva
Software Mentions: 6
Published: almost 9 years ago

10.7554/eLife.50069

Metabolic stress is a primary pathogenic event in transgenic Caenorhabditis elegans expressing pan-neuronal human amyloid beta
Cited by: 49
Author(s): Emelyne Teo, Sudharshan Ravi, Diogo Barardo, Hyung-Seok Kim, Sheng Fong, Amaury Cazenave-Gassiot, Tsze Yin Tan, Jianhong Ching, Jean‐Paul Kovalik, Markus R. Wenk, Rudiyanto Gunawan, Philip K. Moore, Barry Halliwell, Nicholas S. Tolwinski, Jan Gruber
Software Mentions: 6
Published: about 5 years ago

10.1016/j.mex.2020.100820

A statistical and numerical modeling approach for spatiotemporal reconstruction of glaciations in the Central Asian mountains
Cited by: 1
Author(s): Sourav Saha, Lewis A. Owen, Elizabeth N. Orr, Marc W. Caffee
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12881-020-01099-7

Understanding the molecular association between hyperkalemia and lung squamous cell carcinomas
Cited by: 2
Author(s): Xianping Meng, Huiqi Lu, Xia Jiang, Bin Huang, Song Wu, Guiping Yu, Hongbao Cao
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1008806

VolPy: Automated and scalable analysis pipelines for voltage imaging datasets
Cited by: 17
Author(s): Changjia Cai, Johannes Friedrich, Amrita Singh, M. Hossein Eybposh, Eftychios A. Pnevmatikakis, Kaspar Podgorski, Andrea Giovannucci
Software Mentions: 5
Published: over 3 years ago

10.1186/s12881-020-01108-9

Deep vein thrombosis inhibitor may play a therapeutic role in post-stroke patients
Cited by: 1
Author(s): Xiao Xiang, Di Yuan, Peiyan Kong, Ting Chen, Han Yao, Shijia Lin, Xi Zhang, Hongbao Cao
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1007082

DART-ID increases single-cell proteome coverage
Cited by: 49
Author(s): Albert T. Chen, Alexander Franks, Nikolai Slavov
Software Mentions: 5
Published: over 5 years ago

10.1186/s13756-019-0567-6

Abstracts from the 5th International Conference on Prevention & Infection Control (ICPIC 2019)
Cited by: 10
Author(s):
Software Mentions: 5
Published: about 5 years ago

10.1186/1748-7188-5-32

Gravitation field algorithm and its application in gene cluster
Cited by: 24
Author(s): Ming Zheng, Guixia Liu, Chunguang Zhou, Yanchun Liang, Yan Wang
Software Mentions: 5
Published: about 14 years ago

10.18632/aging.203422

Hedgehog dysregulation contributes to tissue-specific inflammaging of resident macrophages
Cited by: 8
Author(s): Mahamat Babagana, Kyu-Seon Oh, Sayantan Chakraborty, Alicja Pacholewska, Mohammad Aqdas, Myong-Hee Sung
Software Mentions: 5
Published: over 3 years ago

10.1186/s12870-016-0860-y

CicerTransDB 1.0: a resource for expression and functional study of chickpea transcription factors
Cited by: 16
Author(s): Saurabh Gayali, Shankar Acharya, Nilesh Vikram Lande, Ashish Pandey, Subhra Chakraborty, Niranjan Chakraborty
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-88939-5

GPCR_LigandClassify.py; a rigorous machine learning classifier for GPCR targeting compounds
Cited by: 6
Author(s): Marawan Ahmed, Horia Jalily Hasani, Subha Kalyaanamoorthy, Khaled Barakat
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0063903

Exercise Challenge in Gulf War Illness Reveals Two Subgroups with Altered Brain Structure and Function
Cited by: 65
Author(s): Rakib U. Rayhan, Benson W. Stevens, Megna P Raksit, Joshua A. Ripple, Christian Timbol, Oluwatoyin Adewuyi, John W. VanMeter, James N. Baraniuk
Software Mentions: 5
Published: over 11 years ago

10.7554/eLife.61298

A small number of workers with specific personality traits perform tool use in ants
Cited by: 12
Author(s): István Maák, Garyk Roelandt, Patrizia d’Ettorre
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13613-019-0600-1

Prediction of mortality in adult patients with sepsis using six biomarkers: a systematic review and meta-analysis
Cited by: 38
Author(s): Andreas Pregernig, Mattia Müller, Ulrike Held, Beatrice Beck‐Schimmer
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-12-S1-S43

HDX-Analyzer: a novel package for statistical analysis of protein structure dynamics
Cited by: 34
Author(s): Sanmin Liu, Lantao Liu, Uğur Uzuner, Xin Zhou, Manxi Gu, Weibing Shi, Yixiang Zhang, Susie Y. Dai, Joshua S. Yuan
Software Mentions: 5
Published: almost 14 years ago

10.1186/s13054-019-2358-0

39th International Symposium on Intensive Care and Emergency Medicine
Cited by: 7
Author(s): Giuseppe Carrà, Francesca Marta Elli, Larissa R. Brunner Huber, Fabián Güiza, Bogdan-Andrei Ianosi, Rass, Bart Depreitere, G Meyfrodidt, Giuseppe Citerio, Raimund Helbok
Software Mentions: 5
Published: over 5 years ago

10.1007/s00395-020-0784-4

CRISPLD1: a novel conserved target in the transition to human heart failure
Cited by: 12
Author(s): Sara Khadjeh, Vanessa Hindmarsh, Frederike Weber, Lukas Cyganek, Ramón Vidal, Setare Torkieh, Katrin Streckfuß‐Bömeke, Dawid Lbik, Malte Tiburcy, Belal A. Mohamed, Stefan Bonn, Karl Toischer, Gerd Hasenfuß
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-66759-3

The seed water content as a time-independent physiological trait during germination in wild tree species such as Ceiba aesculifolia
Cited by: 6
Author(s): Ximena Gómez‐Maqueo, Diana Soriano, Noé Velázquez-Rosas, Sandra Alvarado-López, Karina Jiménez‐Durán, María Del Mar Garciadiego, Alicia Gamboa‐deBuen
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2105-14-S19-S1

MaTSE: the gene expression time-series explorer
Cited by: 46
Author(s): P. Craig, Alan Cannon, Robert Kukla, Jessie Kennedy
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-021-82136-0

A high-throughput RNA-Seq approach to elucidate the transcriptional response of Piriformospora indica to high salt stress
Cited by: 13
Author(s): Nivedita, Abdul Rawoof, Nirala Ramchiary, M. Z. Abdin
Software Mentions: 5
Published: almost 4 years ago

10.3390/brainsci10120938

A Review and a Framework of Variables for Defining and Characterizing Tinnitus Subphenotypes
Cited by: 15
Author(s): Eleni Genitsaridi, Derek J. Hoare, Theodore Kypraios, Deborah A. Hall
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.54540

A Matlab-based toolbox for characterizing behavior of rodents engaged in string-pulling
Cited by: 13
Author(s): Samsoon Inayat, Surjeet Singh, Arashk Ghasroddashti, Qandeel, Pramuka Egodage, Ian Q. Whishaw, Majid H. Mohajerani
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-81349-7

Inhibition of mitochondrial function by metformin increases glucose uptake, glycolysis and GDF-15 release from intestinal cells
Cited by: 46
Author(s): Ming Yang, Tamana Darwish, Pierre Larraufie, Debra Rimmington, Irène Cimino, Deborah A. Goldspink, Benjamin Jenkins, Albert Koulman, Cheryl A. Brighton, Marcella Ma, Brian Lam, Anthony P. Coll, Stephen O’Rahilly, Frank Reimann, Fiona M. Gribble
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-016-0902-3

NEAT: a framework for building fully automated NGS pipelines and analyses
Cited by: 7
Author(s): Patrick Schorderet
Software Mentions: 5
Published: almost 9 years ago

10.1042/BSR20192690

Development and validation of a nomogram for assessing survival in patients with hepatocellular carcinoma after hepatectomy
Cited by: 4
Author(s): Rong‐Rui Huo, Xu Liu, Jing Cui, Liang Ma, Kunhua Huang, Cai-Yi He, Yang Yang, Xue‐Mei You, Yuan Wang, Bang‐De Xiang, Jian‐Hong Zhong, Le‐Qun Li
Software Mentions: 5
Published: over 4 years ago

10.1186/s40064-015-1609-z

Structural homology guided alignment of cysteine rich proteins
Cited by: 16
Author(s): Thomas Shafee, Andrew Robinson, Nicole. Van Der Weerden, Marilyn A. Anderson
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0097446

Supervised Learning Classification Models for Prediction of Plant Virus Encoded RNA Silencing Suppressors
Cited by: 13
Author(s): Zeenia Jagga, Dinesh Gupta
Software Mentions: 5
Published: over 10 years ago

10.1093/hmg/ddz043

PAX7 target gene repression is a superior FSHD biomarker than DUX4 target gene activation, associating with pathological severity and identifying FSHD at the single-cell level
Cited by: 39
Author(s): Christopher R. S. Banerji, Peter S. Zammit
Software Mentions: 5
Published: over 5 years ago

10.1186/s13017-021-00389-6

Team dynamics in emergency surgery teams: results from a first international survey
Cited by: 18
Author(s): Lorenzo Cobianchi, Francesca Dal Mas, Maurizio Massaro, Paola Fugazzola, Federico Coccolini, Yoram Kluger, Ari Leppäniemi, Ernest E. Moore, Massimo Sartelli, Peter Angelos, Luca Ansaloni
Software Mentions: 5
Published: about 3 years ago

10.3390/cells10061516

Statistical Approach to Incorporating Experimental Variability into a Mathematical Model of the Voltage-Gated Na+ Channel and Human Atrial Action Potential
Cited by: 0
Author(s): Daniel Gratz, Alexander Winkle, Seth H. Weinberg, Thomas J. Hund
Software Mentions: 5
Published: over 3 years ago

10.12688/f1000research.55027.1

rmcorrShiny: A web and standalone application for repeated measures correlation
Cited by: 14
Author(s): Laura R. Marusich, Jonathan Z. Bakdash
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2017.00548

Transcriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa
Cited by: 26
Author(s): Xia Zhao, Mengyu Shen, Xingyu Jiang, Wei Shen, Qian Zhong, Yuhui Yang, Yinling Tan, Melissa Agnello, Xuesong He, Fuquan Hu, Shuai Le
Software Mentions: 4
Published: over 7 years ago

10.1038/srep23518

The chemosensory receptors of codling moth Cydia pomonella–expression in larvae and adults
Cited by: 46
Author(s): William B. Walker, Francisco Gonzalez, Stephen F. Garczynski, Peter Witzgall
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2020.608895

Gentamicin Induced Microbiome Adaptations Associate With Increased BCAA Levels and Enhance Severity of Influenza Infection
Cited by: 6
Author(s): Ye Sun, Zi He, Jiajia Li, Saisai Gong, Shunzong Yuan, Tao Li, Nianzhi Ning, Xing Li, Liangyan Zhang, Fanghong Chen, Li Zhan, Jianxin Wang, Di Luo, Hui Wang
Software Mentions: 4
Published: over 3 years ago

10.3390/proteomes9020028

Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle
Cited by: 10
Author(s): Britta Eggers, Karin Schork, Michael Turewicz, Katalin Barkovits, Martin Eisenacher, Rolf Schröder, Christoph S. Clemen, Katrin Marcus
Software Mentions: 4
Published: over 3 years ago

10.1186/s12943-018-0833-x

RNA-Seq profiling of circular RNAs in human laryngeal squamous cell carcinomas
Cited by: 57
Author(s): Cheng Hsien Lu, Xi Su, Amanda Y. Wang, Tao Yuan, Zhenxiao Wang, Chaoping Huang, Yuehua Qiao, Hongyi Hu, Liangfa Liu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0093846

The SLE Transcriptome Exhibits Evidence of Chronic Endotoxin Exposure and Has Widespread Dysregulation of Non-Coding and Coding RNAs
Cited by: 104
Author(s): Lei Shi, Zhe Zhang, Angela M Yu, Wei Wang, Zhi Wei, Ehtisham Akhter, Kelly Maurer, Patrícia Costa-Reis, Li Song, Michelle Petri, Kathleen E. Sullivan
Software Mentions: 4
Published: over 10 years ago

10.1038/s41398-021-01309-7

Gut microbial taxa elevated by dietary sugar disrupt memory function
Cited by: 42
Author(s): Emily E. Noble, C. Anders Olson, Elizabeth A. Davis, Linda Tsan, Yen‐Wei Chen, Ruth Schade, Clarissa Liu, Andrea N. Suarez, Roshonda B. Jones, Claire de La Serre, Xia Yang, Elaine Y. Hsiao, Scott E. Kanoski
Software Mentions: 4
Published: over 3 years ago

10.1128/mSystems.01048-20

Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest
Cited by: 3
Author(s): Kaitlyn N. Myers, Daniel Conn, Amanda M. V. Brown
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0185207

Escape Excel: A tool for preventing gene symbol and accession conversion errors
Cited by: 8
Author(s): Eric A. Welsh, Paul A. Stewart, Brent M. Kuenzi, James A. Eschrich
Software Mentions: 4
Published: about 7 years ago

10.1111/mec.14084

Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation atFLCorthologues
Cited by: 58
Author(s): Christiane Kiefer, Edouard Severing, Robert Karl, Sara Bergonzi, Marcus A. Koch, Achim Tresch, George Coupland
Software Mentions: 4
Published: over 7 years ago

10.1016/j.molcel.2018.09.023

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery
Cited by: 20
Author(s): Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Fabio Puddu, Samuel Robson, Stephen Jackson, Tony Kouzarides
Software Mentions: 4
Published: about 6 years ago

10.1038/srep26846

Transcriptome analysis of human ageing in male skin shows mid-life period of variability and central role of NF-κB
Cited by: 48
Author(s): Daniel Haustead, Andrew Stevenson, Vishal Saxena, Fiona Marriage, Martin J Firth, Robyn C Silla, Lisa W. Martin, Katharine F. Adcroft, Suzanne Rea, Philip J. Day, Phillip E. Melton, Fiona Wood, Mark W. Fear
Software Mentions: 4
Published: over 8 years ago

10.1016/j.celrep.2013.08.012

In Vivo T-Box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuromesodermal Bipotency
Cited by: 95
Author(s): George E. Gentsch, Nick Owens, Stephen R. Martin, Paul Piccinelli, Tiago Faial, Matthew Trotter, Michael J. Gilchrist, James C. Smith
Software Mentions: 4
Published: about 11 years ago

10.1080/21505594.2021.1958057

Transcriptional response of Aspergillus fumigatus to copper and the role of the Cu chaperones
Cited by: 6
Author(s): Duaa Anabosi, Zohar Meir, Yana Shadkchan, Mariana Handelman, Ammar Abou-Kandil, Annie Yap, Daniel Urlings, Morgan Gold, Sven Krappmann, Hubertus Haas, Nir Osherov
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0237397

Spatial heterogeneity of coral reef benthic communities in Kenya
Cited by: 5
Author(s): Juliet Karisa, David Obura, Chaolun Allen Chen
Software Mentions: 4
Published: about 4 years ago

10.1016/j.stem.2020.07.019

Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
Cited by: 36
Author(s): Daniel Ortmann, Stephanie Brown, Anne Czechanski, Selcan Aydin, Daniele Muraro, Yuanhua Huang, Rute Tomaz, Anna Osnato, Giovanni Canu, Brandon T Wesley, Daniel A. Skelly, Oliver Stegle, Tae-Young Choi, Gary A. Churchill, Christopher L. Baker, Peter J. Rugg‐Gunn, Steven C. Munger, Laura G. Reinholdt, Ludovic Vallier
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0245222

Early Holocene Scandinavian foragers on a journey to affluence: Mesolithic fish exploitation, seasonal abundance and storage investigated through strontium isotope ratios by laser ablation (LA‐MC-ICP‐MS)
Cited by: 9
Author(s): Adam Boëthius, Mathilda Kjällquist, Melanie Kielman‐Schmitt, Torbjörn Ahlström, Lars Larsson
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12916-020-01726-3

COVID-19 length of hospital stay: a systematic review and data synthesis
Cited by: 385
Author(s): Eleanor M. Rees, Emily Nightingale, Yalda Jafari, Naomi R. Waterlow, Samuel Clifford, Carl A. B. Pearson, Thibaut Jombart, Simon R. Procter, Gwenan M. Knight
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0124671

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
Cited by: 158
Author(s): Dáithí C. Murray, Megan L. Coghlan, Michael Bunce
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pgen.1006879

Open chromatin profiling identifies AP1 as a transcriptional regulator in oesophageal adenocarcinoma
Cited by: 40
Author(s): Edward Britton, Connor Rogerson, Shaveta Mehta, Yaoyong Li, Xiaodun Li, Rebecca C. Fitzgerald, Yeng Ang, Andrew D Sharrocks
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pgen.1008197

Novel protective and risk loci in hip dysplasia in German Shepherds
Cited by: 8
Author(s): Lea Mikkola, Saila Holopainen, Anu K. Lappalainen, Tiina Pessa‐Morikawa, Thomas Pulikotial Augustine, Meharji Arumilli, Marjo K. Hytönen, Osmo Hakosalo, Hannes Lohi, Antti Iivanainen
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22052276

Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment
Cited by: 4
Author(s): Viktoria Fuhr, Ehsan Vafadarnejad, Oliver Dietrich, Panagiota Arampatzi, Angela Riedel, Antoine‐Emmanuel Saliba, Andreas Rosenwald, Hilka Rauert-Wunderlich
Software Mentions: 4
Published: over 3 years ago

10.1186/s12913-020-05806-1

Limited predictive value of admission time in clinical psychiatry
Cited by: 0
Author(s): Peter Kreuzer, Stefan Günther, Jorge Simões, Michael Ziereis, Berthold Langguth
Software Mentions: 4
Published: about 4 years ago

10.1111/tpj.14454

Metabolic diversification of nitrogen‐containing metabolites by the expression of a heterologous lysine decarboxylase gene in Arabidopsis
Cited by: 10
Author(s): Y. Shimizu, Amit Rai, Yuko Okawa, Hajime Tomatsu, Masaru Satô, Kota Kera, Hideyuki Suzuki, Kazuki Saito, Mami Yamazaki
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1004884

A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells
Cited by: 5
Author(s): Víctor Treviño, Alberto Cassese, Zsuzsanna Nagy, Xiaodong Zhuang, John Herbert, Philipp Antzack, Kim Clarke, Nick Davies, Ayesha Rahman, Moray J. Campbell, Michele Guindani, Roy Bicknell, Marina Vannucci, Francesco Falciani
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0246446

Using touchscreen equipped operant chambers to study animal cognition. Benefits, limitations, and advice
Cited by: 8
Author(s): Benjamin M Seitz, Kelsey McCune, Maggie MacPherson, Luisa Bergeron, Aaron P. Blaisdell, Corina J. Logan
Software Mentions: 4
Published: almost 4 years ago

10.1111/tpj.15278

An Arabidopsis lipid map reveals differences between tissues and dynamic changes throughout development
Cited by: 17
Author(s): Cheka Kehelpannala, Thusitha Rupasinghe, Asher Pasha, Eddi Esteban, Thomas Hennessy, David Bradley, Berit Ebert, Nicholas J. Provart, Ute Roessner
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-017-4122-7

Chemosensory gene expression in olfactory organs of the anthropophilic Anopheles coluzzii and zoophilic Anopheles quadriannulatus
Cited by: 25
Author(s): Giridhar Athrey, Luciano V. Cosme, Zachary R. Popkin-Hall, Sharmila Pathikonda, Willem Takken, Michel A. Slotman
Software Mentions: 4
Published: about 7 years ago

10.1111/tpj.14795

The genetic and functional analysis of flavor in commercial tomato: the FLORAL4 gene underlies a QTL for floral aroma volatiles in tomato fruit
Cited by: 30
Author(s): Yury Tikunov, Raana Roohanitaziani, Fien Meijer‐Dekens, Jos Molthoff, João Paulo, Richard Finkers, Iris Capel, Fátima Carvajal Moreno, Chris Maliepaard, Mariska Nijenhuis-de Vries, C.W. Labrie, W. Verkerke, A.W. van Heusden, Fred van Eeuwijk, R.G.F. Visser, Arnaud Bovy
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms22031332

The Expression of the Cancer-Associated lncRNA Snhg15 Is Modulated by EphrinA5-Induced Signaling
Cited by: 4
Author(s): Daniel Pensold, Julia Gehrmann, Georg Pitschelatow, Asa Walberg, Kai Braunsteffer, Julia Reichard, Amin Ravaei, Jenice Linde, Angelika Lampert, Ivan G. Costa, Geraldine Zimmer-Bensch
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj-cs.384

Comparing general and specialized word embeddings for biomedical named entity recognition
Cited by: 4
Author(s): Rigo E. Ramos-Vargas, Israel Román-Godínez, Sulema Torres-Ramos
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-017-0363-6

Pancreatic cyst fluid harbors a unique microbiome
Cited by: 53
Author(s): Shan Li, Gwenny M. Fuhler, Nahush Bn, Tony Jose, Marco J. Bruno, Maikel P. Peppelenbosch, Sergey R. Konstantinov
Software Mentions: 4
Published: about 7 years ago

Projects: pypi: excel

Papers Mentioning excel 2,995