Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-021-03984-1

https://doi.org/10.1186/s12859-021-03984-1

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

Cited by: 6
Author(s): Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal K. Das, Paweł Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski
Published: almost 4 years ago

Software Mentions 7

pypi: CellProfiler

Papers that mentioned: 1,504
pypi: excel
This package name is reserved by Microsoft Corporation
Papers that mentioned: 2,995
pypi: napari
n-dimensional array viewer in Python
Papers that mentioned: 7
pypi: NEMO
NEMO is a laboratory logistics web application. Use it to schedule reservations, control tool access, track maintenance issues, and more.
Papers that mentioned: 193
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: PartSeg
PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
Papers that mentioned: 1
pypi: SimpleITK
SimpleITK is a simplified interface to the Insight Toolkit (ITK) for image registration and segmentation
Papers that mentioned: 74