Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1371/journal.pone.0189159
Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot study
Cited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: almost 7 years ago
10.3389/fpls.2019.00963
Identification of a Dominant Chlorosis Phenotype Through a Forward Screen of the Triticum turgidum cv. Kronos TILLING Population
Cited by: 17
Author(s): Sophie A Harrington, Nicolás Cobo, Miroslava Karafiátová, Jaroslav Doležel, Philippa Borrill, Cristóbal Uauy
Software Mentions: 5
Published: over 5 years ago
10.1186/s12885-017-3777-4
Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer
Cited by: 28
Author(s): Mingshan Liu, Yang Liu, Jiabo Di, Zhe Su, Hong Yang, Beihai Jiang, Zaozao Wang, Zhen Meng, Fan Bai, Xiangqian Su
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pntd.0009504
Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect host
Cited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: about 3 years ago
10.3389/fpls.2020.00545
Spatiotemporal Modulation of Flavonoid Metabolism in Blueberries
Cited by: 38
Author(s): Catrin S. Günther, Andrew P. Dare, Tony K. McGhie, Cecilia Deng, Declan J. Lafferty, Blue Plunkett, Ella Grierson, Janice L. Turner, Laura Jaakola, Nick W. Albert, Richard V. Espley
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0232456
Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environment
Cited by: 10
Author(s): Zohorul Islam, Thor Bech Johannesen, Berit Lilje, Tinna Ravnholt Urth, Anders Rhod Larsen, Øystein Angen, Jesper Larsen
Software Mentions: 5
Published: over 4 years ago
10.1186/s12864-016-3254-5
Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis
Cited by: 72
Author(s): Dongmei Ai, Ruocheng Huang, Ji Wen, Chao Li, Jianguo Zhu, Xia Li
Software Mentions: 5
Published: almost 8 years ago
10.1111/acel.13280
Modeling the human aging transcriptome across tissues, health status, and sex
Cited by: 23
Author(s): Maxim N. Shokhirev, Adiv A. Johnson
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2016.01225
TALE-Like Effectors Are an Ancestral Feature of the Ralstonia solanacearum Species Complex and Converge in DNA Targeting Specificity
Cited by: 29
Author(s): Niklas Schandry, Orlando de Lange, Philippe Prior, Thomas Lahaye
Software Mentions: 5
Published: over 8 years ago
10.3389/fpls.2021.695439
Genome-Wide Identification and Characterization of Small Peptides in Maize
Cited by: 15
Author(s): Yan Liang, Wanchao Zhu, Sijia Chen, Qidong Jia, Li Lin
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0105097
Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance
Cited by: 64
Author(s): Ian C. McDowell, Chamilani Nikapitiya, Derek Aguiar, Christopher E. Lane, Sorin Istrail, Marta Gómez-Chiarri
Software Mentions: 5
Published: over 10 years ago
10.1186/s12859-015-0678-x
HiCdat: a fast and easy-to-use Hi-C data analysis tool
Cited by: 45
Author(s): Marc W. Schmid, Stefan Grob, Ueli Grossniklaus
Software Mentions: 5
Published: about 9 years ago
10.3389/fonc.2019.01206
Exploration of the Transcriptional Landscape of ALPPS Reveals the Pathways of Accelerated Liver Regeneration
Cited by: 11
Author(s): Pieter Borger, Marcel Schneider, Lukas Frick, Magda Langiewicz, Maksim Sorokin, Anton Buzdin, Ekaterina Kachaylo, Rolf Graf, Bostjan Humar, Pierre‐Alain Clavien
Software Mentions: 5
Published: about 5 years ago
10.1186/s12864-017-4100-0
Comparative transcriptomics of female and male gametocytes in Plasmodium berghei and the evolution of sex in alveolates
Cited by: 61
Author(s): Lee M. Yeoh, Christopher D. Goodman, Vanessa Mollard, Geoffrey I. McFadden, Stuart A. Ralph
Software Mentions: 5
Published: about 7 years ago
10.3389/fmicb.2019.01116
Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Cited by: 116
Author(s): Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Software Mentions: 5
Published: over 5 years ago
10.3389/fimmu.2017.00308
Expression of Serum microRNAs is Altered During Acute Graft-versus-Host Disease
Cited by: 23
Author(s): Rachel E Crossland, Jean Norden, Mateja Kralj Juric, Kile Green, Kim Pearce, Clare Lendrem, Hildegard Greinix, AM Dickinson
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2017.00101
Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira
Cited by: 163
Author(s): Ryan P. Bartelme, Sandra L. McLellan, Ryan J. Newton
Software Mentions: 5
Published: almost 8 years ago
10.1371/journal.pbio.3000091
Non-proteolytic ubiquitin modification of PPARγ by Smurf1 protects the liver from steatosis
Cited by: 16
Author(s): Kun Yan Zhu, Yi Tang, Xuan Xu, Hien Dang, Liu-Ya Tang, Xiang Wang, Xin Wei Wang, Ying E. Zhang
Software Mentions: 5
Published: almost 6 years ago
10.3389/fimmu.2020.01636
Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse
Cited by: 101
Author(s): Luiz Gustavo Gardinassi, Camila Oliveira Silva Souza, Helioswilton Sales‐Campos, Simone Gonçalves Fonseca
Software Mentions: 5
Published: over 4 years ago
10.3390/plants10020267
Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0065267
Zinc Finger Nuclease Mediated Knockout of ADP-Dependent Glucokinase in Cancer Cell Lines: Effects on Cell Survival and Mitochondrial Oxidative Metabolism
Cited by: 14
Author(s): Susan Richter, Shona Morrison, Timothy Connor, Jiechuang Su, Cristin G. Print, Ron S. Ronimus, Sean L. McGee, William R. Wilson
Software Mentions: 5
Published: over 11 years ago
10.1371/journal.pgen.1005305
Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish
Cited by: 62
Author(s): Kimberley Evason, Macrina T. Francisco, Vladislava Juric, Sanjeev Balakrishnan, Maria del Pilar Lopez Pazmino, John D. Gordan, Sanjay Kakar, Jan M. Spitsbergen, Andrei Goga, Didier Y. R. Stainier
Software Mentions: 5
Published: over 9 years ago
10.3390/plants10091870
The Arabinogalactan Protein Family of Centaurium erythraea Rafn
Cited by: 3
Author(s): Danijela M. Paunović, Katarina Ćuković, Milica Bogdanović, Slaðana Todorović, Milana Trifunović‐Momčilov, Angelina Subotić, Ana Simonović, Milan Dragićević
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0208371
Genetic resistance to DEHP-induced transgenerational endocrine disruption
Cited by: 17
Author(s): Ludwig Stenz, Rita Rahban, Julien Prados, Serge Nef, Ariane Paoloni-Giacobino
Software Mentions: 5
Published: over 5 years ago
10.3389/fgene.2020.00055
Establishment of a Prognostic Model Using Immune-Related Genes in Patients With Hepatocellular Carcinoma
Cited by: 14
Author(s): Wenjie Wang, Han Wang, Ting-yan Hua, Wei Song, Jie Zhu, Jingjing Wang, Yongzhen Huang, Zhi-Liang Ding
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2020.00870
Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize
Cited by: 13
Author(s): Jonás A. Aguirre‐Liguori, Javier Alejandro Luna-Sanchez, Jaime Gasca-Pineda, Luis E. Eguiarte
Software Mentions: 5
Published: about 4 years ago
10.1186/1756-0500-5-596
MetabR: an R script for linear model analysis of quantitative metabolomic data
Cited by: 30
Author(s): Ben Ernest, Jessica Gooding, Shawn R. Campagna, Arnold M. Saxton, Brynn H. Voy
Software Mentions: 5
Published: about 12 years ago
10.1111/pbi.13085
Development of an integrated 200K <scp>SNP</scp> genotyping array and application for genetic mapping, genome assembly improvement and genome wide association studies in pear (<i>Pyrus</i>)
Cited by: 43
Author(s): Xiaolong Li, Jugpreet Singh, Mengfan Qin, Siwei Li, Xun Zhang, Mingyue Zhang, Awais Khan, Shaoling Zhang
Software Mentions: 5
Published: almost 6 years ago
10.3389/fcimb.2020.588155
Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease
Cited by: 14
Author(s): Kai Bao, Xiaofei Li, Lucy Poveda, Weihong Qi, Nathalie Selevsek, Pınar Gümüş, Gülnur Emingil, Jonas Grossmann, Patricia I. Diaz, George Hajishengallis, Nagihan Bostancı, Georgios N. Belibasakis
Software Mentions: 5
Published: about 4 years ago
10.1111/pbi.13236
Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton ( <i>Gossypium hirsutum</i> )
Cited by: 42
Author(s): Syed Shan-e-Ali Zaidi, Rubab Zahra Naqvi, Muhammad Asif, Susan R. Strickler, Sara Shakir, Muhammad Shafiq, Ayesha Khan, Imran Amin, Bharat Mishra, M. Shahid Mukhtar, Brian E. Scheffler, Jodi A. Scheffler, Lukas A. Mueller, Shahid Mansoor
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pgen.1006667
Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans
Cited by: 85
Author(s): Eve W. L. Chow, Shelly Applen Clancey, R. Blake Billmyre, Anna Floyd Averette, Joshua A. Granek, Piotr A. Mieczkowski, María E. Cárdenas, Joseph Heitman
Software Mentions: 5
Published: over 7 years ago
10.3389/fcell.2021.655866
Proteomic Changes Associated With Sperm Fertilizing Ability in Meat-Type Roosters
Cited by: 4
Author(s): Anaïs Vitorino Carvalho, Laura Soler, Aurore Thélie, Isabelle Grasseau, Luiz Cordeiro, Daniel Tomas, Ana-Paula Teixeira-Gomes, Valérie Labas, Elisabeth Blesblois
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.648331
Fibrillarin-GFP Facilitates the Identification of Meiotic Competent Oocytes
Cited by: 6
Author(s): Ting Wang, Jie Na
Software Mentions: 5
Published: over 3 years ago
10.3389/fbioe.2017.00084
Meta-Analysis of Aedes aegypti Expression Datasets: Comparing Virus Infection and Blood-Fed Transcriptomes to Identify Markers of Virus Presence
Cited by: 11
Author(s): Kiyoshi F. Fukutani, José Irahe Kasprzykowski, Alexandre Rossi Paschoal, Matheus de Souza Gomes, Aldina Barral, Camila I. de Oliveira, Pablo Ivan Pereira Ramos, Artur T. L. Queiroz
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pbio.2006347
Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation
Cited by: 33
Author(s): Mingming Zhao, Jaimy Joy, Weiqiang Zhou, Supriyo De, William H. Wood, Kevin G. Becker, Hongkai Ji, Ranjan Sen
Software Mentions: 5
Published: about 6 years ago
10.7554/eLife.20937
Enforcement of developmental lineage specificity by transcription factor Oct1
Cited by: 14
Author(s): Zuolian Shen, Jinsuk Kang, Arvind Shakya, Marcin Tabaka, Elke A. Jarboe, Aviv Regev, Dean Tantin
Software Mentions: 5
Published: over 7 years ago
10.7717/peerj.9205
Human milk microbiota associated with early colonization of the neonatal gut in Mexican newborns
Cited by: 27
Author(s): Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo‐Vadillo, Martín Noé Rangel-Calvillo, Jaime García‐Mena
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0119002
Population Regulation in Magellanic Penguins: What Determines Changes in Colony Size?
Cited by: 31
Author(s): Luciana M. Pozzi, Pablo García Borboroglu, P. Dee Boersma, Miguel Pascual
Software Mentions: 5
Published: over 9 years ago
10.7554/eLife.62236
Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial
Cited by: 21
Author(s): Dimitrios Chantzichristos, Peder Svensson, Terence Garner, Camilla A M Glad, Brian R. Walker, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Penelope Trimpou, Roland H Stimson, Stina Willemoes Borresen, Ulla Feldt‐Rasmussen, Per‐Anders Jansson, Stanko Skrtic, Adam Stevens, Gudmundur Johannsson
Software Mentions: 5
Published: over 3 years ago
10.3389/fchem.2020.00243
An Innovative Sequence-to-Structure-Based Approach to Drug Resistance Interpretation and Prediction: The Use of Molecular Interaction Fields to Detect HIV-1 Protease Binding-Site Dissimilarities
Cited by: 4
Author(s): Nuno G. Alves, Ana I. Mata, João Luís, Rui M. M. Brito, Carlos J. V. Simões
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pgen.1004406
Microbial Succession in the Gut: Directional Trends of Taxonomic and Functional Change in a Birth Cohort of Spanish Infants
Cited by: 139
Author(s): Yvonne Vallès, Alejandro Artacho, Alberto Pascual‐García, María Loreto Ferrús, María José Gosalbes, Juan J. Abellán, M. Pilar Francino
Software Mentions: 5
Published: over 10 years ago
10.3389/fbioe.2019.00229
The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
Cited by: 21
Author(s): Joanna E. Kowalczyk, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor V. Grigoriev, Miia Mäkelä
Software Mentions: 5
Published: about 5 years ago
10.1186/s12870-021-03042-1
Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
Cited by: 12
Author(s): Hongcheng Fang, Xia Liu, Yixin Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jianning Liu, Ke Yang
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.49577
The Mars1 kinase confers photoprotection through signaling in the chloroplast unfolded protein response
Cited by: 40
Author(s): Karina Perlaza, Hannah Toutkoushian, Morgane Boone, Mable Lam, Masakazu Iwai, Martin C. Jonikas, Peter Walter, Silvia Ramundo
Software Mentions: 5
Published: about 5 years ago
10.1002/eji.201847897
Expression of IL‐7Rα and KLRG1 defines functionally distinct CD8 <sup>+</sup> T‐cell populations in humans
Cited by: 24
Author(s): Ester B. M. Remmerswaal, Pleun Hombrink, Benjamin Nota, Hanspeter Pircher, Ineke J. M. ten Berge, René A. W. van Lier, Michiel C. van Aalderen
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0094162
Geographic Variation of Melanisation Patterns in a Hornet Species: Genetic Differences, Climatic Pressures or Aposematic Constraints?
Cited by: 39
Author(s): A. Perrard, Marcella Arca, Quentin Rome, Franck Müller, Jiang-Li Tan, Sanjaya Bista, Hari Nugroho, Raymond Baudoin, Michel Baylac, Jean François Silvain, James M. Carpenter, Claire Villemant
Software Mentions: 5
Published: over 10 years ago
10.1038/onc.2016.382
Genomic modelling of the ESR1 Y537S mutation for evaluating function and new therapeutic approaches for metastatic breast cancer
Cited by: 125
Author(s): Alison Harrod, Janet S. Fulton, Van Nguyen, Manikandan Periyasamy, L Ramos-Garcia, C-F Lai, Gergana Metodieva, Alex de Giorgio, Richard Williams, Delfran Batista dos Santos, Pablo Gómez, M-L Lin, Metodi V. Metodiev, Justin Stebbing, Leandro Castellano, Luca Magnani, R. Charles Coombes, Laki Buluwela, Simak Ali
Software Mentions: 5
Published: about 8 years ago
10.1155/2018/7691794
Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse
Cited by: 6
Author(s): Minjung Kim, Yi Yin Yu, Ji-Hoi Moon, Insong Koh, Jae Hyung Lee
Software Mentions: 5
Published: almost 7 years ago
10.1002/ece3.4160
Time‐lapse cameras reveal latitude and season influence breeding phenology durations in penguins
Cited by: 7
Author(s): Caitlin Black, Ben Collen, Daniel Lunn, Dick Filby, Stephanie Winnard, Tom Hart
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1005274
Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs
Cited by: 61
Author(s): Nadezda Kryuchkova-Mostacci, Marc Robinson‐Rechavi
Software Mentions: 5
Published: almost 8 years ago
10.1093/sleep/zsy186
Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: about 6 years ago
10.1128/mSystems.00130-17
Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data
Cited by: 284
Author(s): Marius Vital, André Karch, Dietmar H. Pieper
Software Mentions: 5
Published: almost 7 years ago
10.1016/j.wroa.2019.100033
Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0193417
Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 6 years ago
10.1186/s12882-018-0944-z
Gene alterations in monocytes are pathogenic factors for immunoglobulin a nephropathy by bioinformatics analysis of microarray data
Cited by: 3
Author(s): Yingbo Guo, Weijie Gao, Danyang Wang, Weijing Liu, Zhongjie Liu
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pbio.2003962
Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: almost 7 years ago
10.1186/1471-2164-14-850
Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Cited by: 62
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 5
Published: almost 11 years ago
10.3389/fphar.2018.00084
Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: almost 7 years ago
10.7554/eLife.13546
Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
Cited by: 246
Author(s): Anjar Tri Wibowo, Claude Becker, G. Marconi, Julius Dürr, Jonathan Price, Jörg Hagmann, Ranjith Papareddy, Hadi Putra, Jorge Kageyama, Jörg Becker, Detlef Weigel, José Gutierrez-Marcos
Software Mentions: 5
Published: over 8 years ago
10.1038/s41598-021-93097-9
Identification of natural product modulators of Merkel cell carcinoma cell growth and survival
Cited by: 2
Author(s): Emily A. Smith, Natasha T. Hill, Tara Gelb, Khalid A. Garman, Ekaterina I. Goncharova, Heidi R. Bokesch, Chang‐Kwon Kim, Karen L. Wendt, Robert H. Cichewicz, Kirk R. Gustafson, Isaac Brownell, Curtis J. Henrich
Software Mentions: 4
Published: over 3 years ago
10.1186/1471-2164-15-221
From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism
Cited by: 119
Author(s): Inès Zouari, Alessandra Salvioli, Matteo Chialva, Mara Novero, Laura Miozzi, Gian Carlo Tenore, Paolo Bagnaresi, Paola Bonfante
Software Mentions: 4
Published: over 10 years ago
10.1038/s41598-021-90607-7
Defining the combined stress response in wild Arachis
Cited by: 12
Author(s): Ana Paula Zotta Mota, Ana Cristina Miranda Brasileiro, Bruna Vidigal, Thais Nicolini Oliveira, Andressa da Cunha Quintana Martins, Mario Alfredo de Passos Saraiva, Ana Cláudia Guerra Araújo, Roberto Coiti Togawa, Maria Fátima Grossi-de-Sá, P. M. Guimarães
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-88743-1
Identification of candidate PAX2-regulated genes implicated in human kidney development
Cited by: 6
Author(s): Yuta Yamamura, Kengo Furuichi, Yuji Murakawa, Shigeki Hirabayashi, Masahito Yoshihara, Keisuke Sako, Shinji Kitajima, Tadashi Toyama, Yasunori Iwata, Norihiko Sakai, Kazuyoshi Hosomichi, Philip M. Murphy, Atsushi Tajima, Keisuke Okita, Kenji Osafune, Shuichi Kaneko, Takashi Wada
Software Mentions: 4
Published: over 3 years ago
10.1002/emmm.201201974
Alteration of the micro <scp>RNA</scp> network during the progression of Alzheimer's disease
Cited by: 393
Author(s): Pierre Lau, Koen Bossers, Rekin’s Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke Sierksma, Amantha Thathiah, David Greenberg, Aikaterini S. Papadopoulou, Tilmann Achsel, Torik Ayoubi, Hermona Soreq, Joost Verhaagen, Dick F. Swaab, Stein Aerts, Bart De Strooper
Software Mentions: 4
Published: about 11 years ago
10.1038/s41598-021-87805-8
Integrin αvβ5 heterodimer is a specific marker of human pancreatic beta cells
Cited by: 4
Author(s): Jacqueline V. Schiesser, Thomas Loudovaris, Helen E. Thomas, Andrew G. Elefanty
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-90250-2
Proteomic analysis-based discovery of a novel biomarker that differentiates intestinal Behçet’s disease from Crohn’s disease
Cited by: 4
Author(s): Jihye Park, Da-Eun Jeong, Youn Wook Chung, Seunghan Han, Da Hye Kim, Jongwook Yu, Jae Hee Cheon, Ji Hwan Ryu
Software Mentions: 4
Published: over 3 years ago
10.3390/vaccines9060664
In Vitro Characterization of the Innate Immune Pathways Engaged by Live and Inactivated Tick-Borne Encephalitis Virus
Cited by: 3
Author(s): Aurora Signorazzi, Jeroen L. A. Pennings, Marilena P. Etna, Malou Noya, Eliana M. Coccia, Anke Huckriede
Software Mentions: 4
Published: over 3 years ago
10.1186/1471-2164-11-23
Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development
Cited by: 37
Author(s): Wen Huang, Brian S. Yandell, Hasan Khatib
Software Mentions: 4
Published: almost 15 years ago
10.15252/emmm.202013131
Synaptic disruption and CREB‐regulated transcription are restored by K <sup>+</sup> channel blockers in ALS
Cited by: 19
Author(s): Alberto Catanese, Sandeep Rajkumar, Daniel Sommer, Dennis Freisem, Alexander Wirth, Amr Aly, David Massa-López, Andrea Olivieri, Federica Torelli, Valentin Ioannidis, Joanna Lipecka, Ida Chiara Guerrera, Daniel Zytnicki, Albert C. Ludolph, Edor Kabashi, Medhanie Mulaw, Francesco Roselli, Tobias M. Böckers
Software Mentions: 4
Published: over 3 years ago
10.1016/j.omto.2020.04.001
A Cross-Reactive Small Protein Binding Domain Provides a Model to Study Off-Tumor CAR-T Cell Toxicity
Cited by: 6
Author(s): Joanne A. Hammill, Jacek M. Kwiecień, Anna Dvorkin‐Gheva, Vivian Wing Chong Lau, Christopher L. Baker, Ying Wu, Ksenia Bezverbnaya, Craig Aarts, Christopher W. Heslen, Galina Denisova, Heather Derocher, Katy Milne, Brad H. Nelson, Jonathan L. Bramson
Software Mentions: 4
Published: over 4 years ago
10.15252/embj.2019104202
Systematic analysis of the <scp>IL</scp> ‐17 receptor signalosome reveals a robust regulatory feedback loop
Cited by: 14
Author(s): Helena Draberova, Sarka Janusova, Daniela Knizkova, Tereza Šemberová, Michaela Přibíková, Andrea Ujevic, Karel Harant, Sofija Knápková, Matouš Hrdinka, Viola Fanfani, Giovanni Stracquadanio, Ales Drobek, Klara Ruppova, Ondřej Štěpánek, Peter Dráber
Software Mentions: 4
Published: over 4 years ago
10.1016/j.dib.2016.05.007
Whole transcriptome data analysis of zebrafish mutants affecting muscle development
Cited by: 7
Author(s): Olivier Armant, Victor Gourain, Christelle Etard, Uwe Strähle
Software Mentions: 4
Published: about 8 years ago
10.1038/s41598-021-83886-7
Using protein turnover to expand the applications of transcriptomics
Cited by: 2
Author(s): Marissa A. Smail, James Reigle, Robert E. McCullumsmith
Software Mentions: 4
Published: over 3 years ago
10.1002/1878-0261.12849
Molecular genomic features associated with<i>in vitro</i>response of the NCI‐60 cancer cell line panel to natural products
Cited by: 10
Author(s): Julia Krushkal, Simarjeet Negi, Laura M. Yee, Jason R. Evans, Tanja Grkovic, Alida Palmisano, Jianwen Fang, Hari Sankaran, Lisa M. McShane, Yingdong Zhao, Barry R. O’Keefe
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-84308-4
Elucidating the genetics of grain yield and stress-resilience in bread wheat using a large-scale genome-wide association mapping study with 55,568 lines
Cited by: 11
Author(s): Philomin Juliana, Ravi P. Singh, Jesse Poland, Sandesh Shrestha, Julio Huerta‐Espino, Velu Govindan, Suchismita Mondal, Leonardo Crespo‐Herrera, Uttam Kumar, Arun Kumar Joshi, Thomas Payne, Pradeep Kumar Bhati, Vipin Tomar, Franjel Consolacion, Jaime Amador Campos Serna
Software Mentions: 4
Published: over 3 years ago
10.1186/s12864-018-4564-6
Characterization of the human RFX transcription factor family by regulatory and target gene analysis
Cited by: 57
Author(s): Debora Sugiaman-Trapman, Morana Vitezic, Eeva-Mari Jouhilahti, Anthony Mathelier, Gilbert Lauter, Santosh Misra, Carsten O. Daub, Juha Kere, Peter Swoboda
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-020-71888-w
Local management and landscape structure determine the assemblage patterns of spiders in vegetable fields
Cited by: 11
Author(s): Hafiz Sohaib Ahmed Saqib, Junhui Chen, Wei Chen, Gábor Pozsgai, Komivi Senyo Akutse, Muhammad Furqan Ashraf, Minsheng You, Geoff M. Gurr
Software Mentions: 4
Published: about 4 years ago
10.1186/s12866-020-01771-1
Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia
Cited by: 6
Author(s): Leah J Radeke, Michael A. Herman
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-020-79436-2
Transcriptomic analysis of early stages of intestinal regeneration in Holothuria glaberrima
Cited by: 12
Author(s): David J. Quispe-Parra, Joshua G. Medina-Feliciano, Sebastián Cruz-González, Humberto Ortíz-Zuazaga, José E. García‐Arrarás
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-96576-1
Dissection of the genetic basis of genotype-by-environment interactions for grain yield and main agronomic traits in Iranian bread wheat landraces and cultivars
Cited by: 9
Author(s): Hadi Alipour, Hossein Abdi, Yousef Rahimi, Mohammad Reza Bihamta
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pone.0149171
RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Cited by: 2
Author(s): Xin Zhao, Yingmin Han, Yu Liang, Chao Nie, Jian Wang
Software Mentions: 4
Published: over 8 years ago
10.1038/s42003-021-02189-9
Claudin-2 promotes colorectal cancer liver metastasis and is a biomarker of the replacement type growth pattern
Cited by: 24
Author(s): Sébastien Tabariès, Matthew G. Annis, Anthoula Lazaris, Stephanie Petrillo, Jennifer Huxham, A. Achour, Vincent Palmieri, Jaclyn M. Chabot, Radia Marie Johnson, Steven Van Laere, Cornelis Verhoef, Yasmina Hachem, Sara Yumeen, Nicholas Meti, Atilla Ömeroğlu, Gulbeyaz Altinel, Zu‐Hua Gao, Alan Yu, Dirk J. Grünhagen, Peter B. Vermeulen, Peter Metrakos, Peter M. Siegel
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms9071378
Effects of Wine and Its Microbial-Derived Metabolites on Intestinal Permeability Using Simulated Gastrointestinal Digestion/Colonic Fermentation and Caco-2 Intestinal Cell Models
Cited by: 11
Author(s): Irene Zorraquín‐Peña, Diego Taladrid, Alba Tamargo, Mariana Silva, Natalia Molinero, Dolores González de Llano, Begoňa Bartolomé, M. Victoria Moreno‐Arribas
Software Mentions: 4
Published: over 3 years ago
10.1002/cti2.1190
BDCA1 <sup>+</sup> cDC2s, BDCA2 <sup>+</sup> pDCs and BDCA3 <sup>+</sup> cDC1s reveal distinct pathophysiologic features and impact on clinical outcomes in melanoma patients
Cited by: 11
Author(s): Eleonora Sosa Cuevas, Laurissa Ouaguia, Stéphane Mouret, J. Charles, Florence de Fraipont, Olivier Manches, Jenny Valladeau‐Guilemond, Nathalie Bendriss‐Vermare, Laurence Chaperot, Caroline Aspord
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-020-59549-4
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
Cited by: 7
Author(s): Katrine Højholt Iversen, Louise Rasmussen, Kosai Al-Nakeeb, José Juan Almagro Armenteros, Christian Salgård Jensen, Rimtas Dargis, Oksana Lukjancenko, Ulrik Stenz Justesen, Claus Moser, Flemming Schønning Rosenvinge, Xiaohui Chen Nielsen, Jens Jørgen Christensen, Simon Rasmussen
Software Mentions: 4
Published: almost 5 years ago
10.1186/1471-2164-15-884
A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: almost 11 years ago
10.3390/microorganisms7020035
The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence
Cited by: 17
Author(s): Joseph A. Hakim, Julie B. Schram, Aaron W. E. Galloway, Casey D. Morrow, Michael R. Crowley, Stephen A. Watts, Asim K. Bej
Software Mentions: 4
Published: almost 6 years ago
10.3390/microorganisms8070987
Analysis of Tick Surface Decontamination Methods
Cited by: 13
Author(s): Angeline Hoffmann, Volker Fingerle, Matthias Noll
Software Mentions: 4
Published: over 4 years ago
10.1186/s13148-019-0804-0
Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature
Cited by: 36
Author(s): Andrea Ciolfi, Erfan Aref‐Eshghi, Simone Pizzi, Lucia Pedace, Evelina Miele, Jennifer Kerkhof, Elisabetta Flex, Simone Martinelli, Francesca Clementina Radio, Claudia Ruivenkamp, Gijs W.E. Santen, Emilia K. Bijlsma, Daniela Q.C.M. Barge-Schaapveld, Katrin Õunap, Victoria Mok Siu, R. Frank Kooy, Bruno Dallapiccola, Bekim Sadiković, Marco Tartaglia
Software Mentions: 4
Published: almost 5 years ago
10.1186/1471-2164-15-474
The human miRNA repertoire of different blood compounds
Cited by: 56
Author(s): Petra Leidinger, Christina Backes, Benjamin Meder, Eckart Meese, Andreas Keller
Software Mentions: 4
Published: over 10 years ago
10.3390/microorganisms9010149
Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species
Cited by: 21
Author(s): Niranjan P. Sahu, Zsolt Merényi, Balázs Bálint, Brigitta Kiss, György Sipos, Rebecca A. Owens, László G. Nagy
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0050267
Multivariate Approach for Studying Interactions between Environmental Variables and Microbial Communities
Cited by: 21
Author(s): Xinhui Wang, Marinus J.C. Eijkemans, Jacco Wallinga, Giske Biesbroek, Krzysztof Trzciński, Elisabeth A. M. Sanders, Debby Bogaert
Software Mentions: 4
Published: almost 12 years ago
10.1038/s41598-020-57546-1
Genomic Survey of Salt Acclimation-Related Genes in the Halophilic Cyanobacterium Euhalothece sp. Z-M001
Cited by: 14
Author(s): Hee Wook Yang, Ji-Young Song, Sung Mi Cho, Hak Cheol Kwon, Cheol‐Ho Pan, Youn‐Il Park
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-020-68222-9
The implication of metabolically active Vibrio spp. in the digestive tract of Litopenaeus vannamei for its post-larval development
Cited by: 6
Author(s): Estefanía Garibay‐Valdez, Luis Rafael Martínez‐Córdova, Marco Antonio López‐Torres, F.J. Almendáriz-Tapia, Marcel Martínez‐Porchas, Kadiya Calderón
Software Mentions: 4
Published: over 4 years ago
10.15252/embj.2019103667
<i>Arabidopsis</i> shoot stem cells display dynamic transcription and <scp>DNA</scp> methylation patterns
Cited by: 40
Author(s): Ruben Gutzat, Klaus Rembart, Thomas Nußbaumer, Falko Hofmann, Rahul Pisupati, Gabriele Bradamante, Nina Daubel, Angelika Gaidora, Nicole Lettner, Mattia Donà, Magnus Nordborg, Michael D. Nodine, Ortrun Mittelsten Scheid
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-97306-3
Differentially expressed genes in the femur cartilage transcriptome clarify the understanding of femoral head separation in chickens
Cited by: 3
Author(s): Ludmila Mudri Hul, A. M. G. Ibelli, Igor Ricardo Savoldi, Débora Ester Petry Marcelino, Lana Teixeira Fernandes, J. O. Peixoto, Maurício Egídio Cantão, R. H. Higa, P. F. Giachetto, Luiz Lehmann Coutinho, Mônica Corrêa Ledur
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-019-51423-2
Methylation content sensitive enzyme ddRAD (MCSeEd): a reference-free, whole genome profiling system to address cytosine/adenine methylation changes
Cited by: 12
Author(s): G. Marconi, Stefano Capomaccio, Cinzia Comino, Alberto Acquadro, Ezio Portis, Andrea Porceddu, Emidio Albertini
Software Mentions: 4
Published: about 5 years ago
10.3390/microorganisms9081585
Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Cited by: 11
Author(s): Ana C. Reis, Liliana C. M. Salvador, Suelee Robbe‐Austerman, Rogério Tenreiro, Ana Botelho, Teresa Albuquerque, Mónica V. Cunha
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0164461
Responses of Bovine Innate Immunity to Mycobacterium avium subsp. paratuberculosis Infection Revealed by Changes in Gene Expression and Levels of MicroRNA
Cited by: 40
Author(s): M. Malvisi, Fiorentina Palazzo, Nicola Morandi, Barbara Lazzari, J. L. Williams, G. Pagnacco, Giulietta Minozzi
Software Mentions: 4
Published: about 8 years ago
10.1186/s12864-016-2801-4
RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome
Cited by: 8
Author(s): Susan M. Corley, Cesar P Canales, Paulina Carmona-Mora, Veronica Mendoza-Reinosa, Annemiek Beverdam, Edna C. Hardeman, Marc R. Wilkins, Steve Palmer
Software Mentions: 4
Published: over 8 years ago