cran: gplots | Projects | Ecosyste.ms: Papers

10.3389/fbioe.2019.00229

The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
Cited by: 21
Author(s): Joanna E. Kowalczyk, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor V. Grigoriev, Miia Mäkelä
Software Mentions: 5
Published: almost 7 years ago

10.1038/onc.2016.382

Genomic modelling of the ESR1 Y537S mutation for evaluating function and new therapeutic approaches for metastatic breast cancer
Cited by: 125
Author(s): Alison Harrod, Janet S. Fulton, Van Nguyen, Manikandan Periyasamy, L Ramos-Garcia, C-F Lai, Gergana Metodieva, Alex de Giorgio, Richard Williams, Delfran Batista dos Santos, Pablo Gómez, M-L Lin, Metodi V. Metodiev, Justin Stebbing, Leandro Castellano, Luca Magnani, R. Charles Coombes, Laki Buluwela, Simak Ali
Software Mentions: 5
Published: almost 10 years ago

10.1186/s12870-021-03042-1

Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
Cited by: 12
Author(s): Hongcheng Fang, Xia Liu, Yixin Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jianning Liu, Ke Yang
Software Mentions: 5
Published: about 5 years ago

10.1002/eji.201847897

Expression of IL‐7Rα and KLRG1 defines functionally distinct CD8 <sup>+</sup> T‐cell populations in humans
Cited by: 24
Author(s): Ester B. M. Remmerswaal, Pleun Hombrink, Benjamin Nota, Hanspeter Pircher, Ineke J. M. ten Berge, René A. W. van Lier, Michiel C. van Aalderen
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0094162

Geographic Variation of Melanisation Patterns in a Hornet Species: Genetic Differences, Climatic Pressures or Aposematic Constraints?
Cited by: 39
Author(s): A. Perrard, Marcella Arca, Quentin Rome, Franck Müller, Jiang-Li Tan, Sanjaya Bista, Hari Nugroho, Raymond Baudoin, Michel Baylac, Jean François Silvain, James M. Carpenter, Claire Villemant
Software Mentions: 5
Published: over 12 years ago

10.1128/mSystems.00130-17

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data
Cited by: 284
Author(s): Marius Vital, André Karch, Dietmar H. Pieper
Software Mentions: 5
Published: over 8 years ago

10.1002/ece3.4160

Time‐lapse cameras reveal latitude and season influence breeding phenology durations in penguins
Cited by: 7
Author(s): Caitlin Black, Ben Collen, Daniel Lunn, Dick Filby, Stephanie Winnard, Tom Hart
Software Mentions: 5
Published: about 8 years ago

10.1093/sleep/zsy186

Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: almost 8 years ago

10.1155/2018/7691794

Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse
Cited by: 6
Author(s): Minjung Kim, Yi Yin Yu, Ji-Hoi Moon, Insong Koh, Jae Hyung Lee
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-82136-0

A high-throughput RNA-Seq approach to elucidate the transcriptional response of Piriformospora indica to high salt stress
Cited by: 13
Author(s): Nivedita, Abdul Rawoof, Nirala Ramchiary, M. Z. Abdin
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-84860-z

Characterisation, identification, clustering, and classification of disease
Cited by: 17
Author(s): Anthony J Webster, Kezia Gaitskell, Iain Turnbull, B J Cairns, Robert Clarke
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1005274

Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs
Cited by: 61
Author(s): Nadezda Kryuchkova-Mostacci, Marc Robinson‐Rechavi
Software Mentions: 5
Published: over 9 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago

10.1186/s12882-018-0944-z

Gene alterations in monocytes are pathogenic factors for immunoglobulin a nephropathy by bioinformatics analysis of microarray data
Cited by: 3
Author(s): Yingbo Guo, Weijie Gao, Danyang Wang, Weijing Liu, Zhongjie Liu
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2164-14-850

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Cited by: 62
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 5
Published: over 12 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2016.01727

Gradual Changes of Gut Microbiota in Weaned Miniature Piglets
Cited by: 123
Author(s): Jun Hu, Yangfan Nie, Jian Wei Chen, Yong Zhang, Zhi‐Chang Wang, Qi-Wen Fan, Xianghua Yan
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-017-08010-0

Small secreted proteins from the necrotrophic conifer pathogen Heterobasidion annosum s.l. (HaSSPs) induce cell death in Nicotiana benthamiana
Cited by: 25
Author(s): Tommaso Raffaello, Fred O. Asiegbu
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-017-14942-4

Genome-wide profiling of nardilysin target genes reveals its role in epigenetic regulation and cell cycle progression
Cited by: 6
Author(s): Yusuke Morita, Mikiko Ohno, Kiyoto Nishi, Yutaka Hiraoka, Sayaka Saijo, Shintaro Matsuda, Toru Kita, Takeshi Kimura, Eiichiro Nishi
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-018-20471-5

Development of an Immune-Pathology Informed Radiomics Model for Non-Small Cell Lung Cancer
Cited by: 104
Author(s): Chad Tang, Brian P. Hobbs, Ahmed M. Amer, Li Xiao, Carmen Behrens, Jaime Rodriguez Canales, Edwin Parra Cuentas, Pamela Villalobos, David Fried, Joe Y. Chang, David S. Hong, James Welsh, Boris Sepesi, Laurence Edward Court, Ignacio I. Wistuba, Eugene J. Koay
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-22977-4

Analysis of the neurotoxic effects of neuropathic organophosphorus compounds in adult zebrafish
Cited by: 11
Author(s): Melissa Faria, Inmaculada Fuertes, Eva Prats, José Luı́s Abad, Francesc Padrós, Cristian Gómez‐Canela, Josefina Casas, Jorge Estévez, Eugenio Vilanova, Benjamı́n Piña, Demetrio Raldúa
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-27027-7

Immunoprofiles of human Sertoli cells infected with Zika virus reveals unique insights into host-pathogen crosstalk
Cited by: 32
Author(s): Daniel P. Strange, Richard Green, Dietmar W. Siemann, Michael Gale, Saguna Verma
Software Mentions: 5
Published: about 8 years ago

10.18632/oncotarget.25350

High expression of nucleoporin 133 mRNA in bone marrow CD138+ cells is a poor prognostic factor in multiple myeloma
Cited by: 4
Author(s): Soushi Ibata, Masayoshi Kobune, Shohei Kikuchi, Masahiro Yoshida, Satoshi Miura, Hyogo Horiguchi, Kazuyuki Murase, Satoshi Iyama, Kohichi Takada, Koji Miyanishi, Junji Kato
Software Mentions: 5
Published: over 8 years ago

10.3389/fimmu.2020.01138

Bioinformatics Analysis of Gut Microbiota and CNS Transcriptome in Virus-Induced Acute Myelitis and Chronic Inflammatory Demyelination; Potential Association of Distinct Bacteria With CNS IgA Upregulation
Cited by: 11
Author(s): Seiichi Omura, Fumitaka Sato, Ah-Mee Park, Mitsugu Fujita, Sundar Khadka, Yumina Nakamura, Aoshi Katsuki, Kenji Nishio, Felicity N. E. Gavins, Ikuo Tsunoda
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2017.00773

The 25–26 nt Small RNAs in Phytophthora parasitica Are Associated with Efficient Silencing of Homologous Endogenous Genes
Cited by: 28
Author(s): Jinbu Jia, Wenqin Lu, Chengcheng Zhong, Ran Zhou, Junjie Xu, Wei Liu, Xiuhong Gou, Qinhu Wang, Junliang Yin, Changwu Xu, Weixing Shan
Software Mentions: 5
Published: over 9 years ago

10.18632/oncotarget.19662

Gene expression and molecular pathway activation signatures of<i>MYCN</i>-amplified neuroblastomas
Cited by: 27
Author(s): Ivan Petrov, Maria Suntsova, Elena Tarasovna Ilnitskaya, S. A. Roumiantsev, Maxim Sorokin, Andrew Garazha, Pavel Spirin, Timofey Lebedev, Нуршат Гайфуллин, Sergey Larin, Olga Kovalchuk, Д. М. Коновалов, Vladimir Prassolov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2019.03153

Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing
Cited by: 33
Author(s): Genevieve L. Fernandes, Belle Damodara Shenoy, Samir Damare
Software Mentions: 5
Published: over 6 years ago

10.18632/oncotarget.20405

Cancer cell line specific co-factors modulate the FOXM1 cistrome
Cited by: 8
Author(s): Yue Wang, Matthew Ung, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmicb.2018.02721

Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions
Cited by: 14
Author(s): Kadiya Calderón, Laurent Philippot, Florian Bizouard, Marie-Christine Breuil, David Bru, Aymé Spor
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2020.00062

Fifteen-Year Application of Manure and Chemical Fertilizers Differently Impacts Soil ARGs and Microbial Community Structure
Cited by: 57
Author(s): Fenghua Wang, Wanxue Han, Shuaimin Chen, Wenxu Dong, Mingqiang Qiao, Chunsheng Hu, Binbin Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.01075

Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
Cited by: 18
Author(s): Linta Reji, Bradley B. Tolar, Francisco P. Chávez, Christopher A. Francis
Software Mentions: 5
Published: about 6 years ago

10.3389/fmed.2020.00101

Distinct Skin Microbiome and Skin Physiological Functions Between Bedridden Older Patients and Healthy People: A Single-Center Study in Japan
Cited by: 16
Author(s): Satoshi Nagase, Kazuhiro Ogai, Tamae Urai, Katsushi Shibata, Emi Matsubara, Kanae Mukai, Miki Matsue, Yosai Mori, Miku Aoki, Defa Arisandi, Junko Sugama, Shigefumi Okamoto
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2021.690251

Low Global Diversity of Candidatus Microthrix, a Troublesome Filamentous Organism in Full-Scale WWTPs
Cited by: 16
Author(s): Marta Nierychlo, Caitlin M. Singleton, Francesca Petriglieri, Lisette Thomsen, Jette Fischer Petersen, Miriam Peces, Zivile Kondrotaite, Morten Simonsen Dueholm, Per Halkjær Nielsen
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.13252

Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
Cited by: 81
Author(s): Yuan-Xiang Shi, Tao Zhu, Ting Zou, Wei Zhuo, Yixin Chen, Ma-Sha Huang, Wei Zheng, Chenjing Wang, Xi Li, Xiao‐Yuan Mao, Wei Zhang, Hong‐Hao Zhou, Ji‐Ye Yin, Zhao‐Qian Liu
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2018.02457

Bacterial Abundance and Community Composition in Pond Water From Shrimp Aquaculture Systems With Different Stocking Densities
Cited by: 61
Author(s): Yustian Rovi Alfiansah, Christiane Hassenrück, Andreas Kunzmann, Arief Taslihan, Jens Harder, Astrid Gärdes
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2018.00897

Lactobacillus frumenti Facilitates Intestinal Epithelial Barrier Function Maintenance in Early-Weaned Piglets
Cited by: 54
Author(s): Jun Hu, Lingli Chen, Wenyong Zheng, Min Shi, Liu Liu, Chunlin Xie, Xinkai Wang, Youguo Niu, Qiliang Hou, Xichen Xu, Baoyang Xu, Yimei Tang, Shengqian Zhou, Yiqin Yan, Tao Yang, Libao Ma, Xianghua Yan
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2015.00031

Field-based evidence for consistent responses of bacterial communities to copper contamination in two contrasting agricultural soils
Cited by: 22
Author(s): Jing Li, Yibing Ma, Hang‐Wei Hu, Juntao Wang, Yurong Liu, Ji‐Zheng He
Software Mentions: 5
Published: over 11 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: almost 9 years ago

10.1038/sdata.2018.290

Transcriptome profiling of a beach-adapted wild legume for dissecting novel mechanisms of salinity tolerance
Cited by: 5
Author(s): Hengyou Zhang, Christine Zuelsdorf, Darin S. Penneys, Shoujin Fan, Janice Kofsky, Bao‐Hua Song
Software Mentions: 5
Published: over 7 years ago

10.1038/sdata.2019.7

The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2018.02015

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions
Cited by: 46
Author(s): Antoine Malabirade, Janine Habier, Anna Heintz‐Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David J. Galas, Paul Wilmes, Joëlle V. Fritz
Software Mentions: 5
Published: almost 8 years ago

10.1038/srep21557

Metabolic/Proteomic Signature Defines Two Glioblastoma Subtypes With Different Clinical Outcome
Cited by: 73
Author(s): Giovanna Marziali, Michele Signore, Mariachiara Buccarelli, Sveva Grande, Alessandra Palma, Mauro Biffoni, Antonella Rosi, Quintino Giorgio D’Alessandris, Maurizio Martini, Luigi Maria Larocca, Ruggero De Maria, Roberto Pallini, Lucia Ricci‐Vitiani
Software Mentions: 5
Published: over 10 years ago

10.1016/j.isci.2021.103092

The gut microbiota instructs the hepatic endothelial cell transcriptome
Cited by: 11
Author(s): Henning Formes, Joana P. Bernardes, Amrit Mann, Franziska Bayer, Giulia Pontarollo, Klytaimnistra Kiouptsi, Katrin Schäfer, Sebastian Attig, Teodora Nikolova, Thomas G. Hofmann, Jörn M. Schattenberg, Hristo Todorov, Susanne Gerber, Philip Rosenstiel, Tobias Bopp, Felix Sommer, Carsten Reinhardt
Software Mentions: 5
Published: almost 5 years ago

10.1038/srep25668

Etiology matters – Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy
Cited by: 76
Author(s): Konrad J. Dębski, Asla Pitkänen, Noora Puhakka, Anna Bot, Ishant Khurana, K N Harikrishnan, Mark Ziemann, Antony Kaspi, Assam El‐Osta, Katarzyna Łukasiuk, Katja Kobow
Software Mentions: 5
Published: over 10 years ago

10.1038/srep31587

Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine models
Cited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: about 10 years ago

10.1038/srep33813

Contrasting diets reveal metabolic plasticity in the tree-killing beetle, Anoplophora glabripennis (Cerambycidae: Lamiinae)
Cited by: 20
Author(s): Charles J. Mason, Erin D. Scully, Scott M. Geib, Kelli Hoover
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2018.02381

How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Cited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: almost 8 years ago

10.3390/ijms22031111

Detection of a DNA Methylation Signature for the Intellectual Developmental Disorder, X-Linked, Syndromic, Armfield Type
Cited by: 9
Author(s): Sadegheh Haghshenas, Michael A. Levy, Jennifer Kerkhof, Erfan Aref‐Eshghi, Haley McConkey, Tugce B. Balci, Victoria Mok Siu, Cindy Skinner, Roger E. Stevenson, Bekim Sadiković, Charles E. Schwartz
Software Mentions: 5
Published: over 5 years ago

10.1038/srep46156

Integrated host and viral transcriptome analyses reveal pathology and inflammatory response mechanisms to ALV-J injection in SPF chickens
Cited by: 18
Author(s): Xi Lan, Yan Wang, Kai Tian, Fei Ye, Huadong Yin, Xiaoling Zhao, Hengyong Xu, Yong Huang, Haibo Li, John Hsieh, Susan J. Lamont, Qing Zhu
Software Mentions: 5
Published: over 9 years ago

10.3390/ijms21218016

Enhancer of Zeste Homolog 2 (EZH2) Mediates Glucolipotoxicity-Induced Apoptosis in β-Cells
Cited by: 3
Author(s): Tina Dahlby, Christian Simon, Marie Balslev Backe, Mattias Salling Dahllöf, Edward B. Holson, Bridget K. Wagner, Marianne Böni-Schnetzler, Michał Marzec, Morten Lundh, Thomas Mandrup‐Poulsen
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-017-00223-7

Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 9 years ago

10.3389/fimmu.2021.680435

An Eight-Gene Hypoxia Signature Predicts Survival in Pancreatic Cancer and Is Associated With an Immunosuppressed Tumor Microenvironment
Cited by: 24
Author(s): Raefa Abou Khouzam, R. Shyama Prasad Rao, Goutham Hassan Venkatesh, Nagwa Ahmed Zeinelabdin, Stéphanie Buart, Maxime Meylan, Manjunath Nimmakayalu, Stéphane Terry, Salem Chouaı̈b
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-01767-4

Systems Immunology of Diabetes-Tuberculosis Comorbidity Reveals Signatures of Disease Complications
Cited by: 78
Author(s): César Augusto Prada-Medina, Kiyoshi F. Fukutani, Nathella Pavan Kumar, Leonardo Gil-Santana, Subash Babu, Flávio Lichtenstein, Kim West, Sivakumar Shanmugam, Pradeep A. Menon, Vijay Viswanathan, Bruno B. Andrade, Hidehiko Nakaya, Hardy Kornfeld
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2018.01909

Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems
Cited by: 25
Author(s): Yining Niu, Luke D. Bainard, William E. May, Zakir Hossain, Chantal Hamel, Yantai Gan
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-017-03489-z

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli
Cited by: 38
Author(s): Tracy H. Hazen, Jane Michalski, Qingwei Luo, Amol C. Shetty, Sean C. Daugherty, James M. Fleckenstein, David A. Rasko
Software Mentions: 5
Published: about 9 years ago

10.3390/ijms21186488

Lipid Stores and Lipid Metabolism Associated Gene Expression in Porcine and Bovine Parthenogenetic Embryos Revealed by Fluorescent Staining and RNA-seq
Cited by: 16
Author(s): Arkadiusz Kajdasz, Ewelina Warzych, Natalia Derebecka, Zofia E. Madeja, D. Lechniak, Joanna Wesoły, Piotr Pawlak
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2017.00398

Transcriptomics Indicates Active and Passive Metronidazole Resistance Mechanisms in Three Seminal Giardia Lines
Cited by: 30
Author(s): Brendan R E Ansell, Louise Baker, Samantha J. Emery, Malcolm J. McConville, Staffan G. Svärd, Robin B. Gasser, Aaron R. Jex
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-017-01032-8

Transcriptomic analysis reveals a previously unknown role for CD8+ T-cells in rVSV-EBOV mediated protection
Cited by: 28
Author(s): Andrea Menicucci, Suhas Sureshchandra, Andrea Marzi, Heinz Feldmann, Ilhem Messaoudi
Software Mentions: 4
Published: over 9 years ago

10.3390/ijms221910814

ZNF521 Enhances MLL-AF9-Dependent Hematopoietic Stem Cell Transformation in Acute Myeloid Leukemias by Altering the Gene Expression Landscape
Cited by: 6
Author(s): Emanuela Chiarella, Annamaria Aloisio, Stefania Scicchitano, Katia Todoerti, Emanuela G. Cosentino, Daniela Lico, Antonino Neri, Nicola Amodio, Heather M. Bond, Maria Mesuraca
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms22157804

Skin Wound Healing Rate in Fish Depends on Species and Microbiota
Cited by: 9
Author(s): Tery Yun, Soeun Shin, Kyungwon Bang, Mugeun Lee, Jung-Ah Cho, Min Won Baek
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms20030510

Molecular Insights into the Classification of Luminal Breast Cancers: The Genomic Heterogeneity of Progesterone-Negative Tumors
Cited by: 23
Author(s): Gianluca Lopez, Jole Costanza, M. Colleoni, Laura Fontana, Stefano Ferrero, Monica Miozzo, Nicola Fusco
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.7209

Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells
Cited by: 20
Author(s): Elena Alexandrova, Giovanni Nassa, Giacomo Corleone, Anton Buzdin, Alexander Aliper, Nadezhda V. Terekhanova, Denis Shepelin, Alex Zhavoronkov, Michael Tamm, Luciano Milanesi, Nicola Miglino, Alessandro Weisz, Pieter Borger
Software Mentions: 4
Published: over 10 years ago

10.1038/srep11671

Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer
Cited by: 27
Author(s): Ji‐Ye Yin, Chenyue Qian, Xiangping Li, Yu Zhang, Huijuan He, Jingjing Wang, Juan Chen, Jiajia Cui, Rongrong Liu, Hui Zhou, Xiao Lin, Xiaojing Xu, Yi Zheng, Yilan Fu, Zi-Yu Chen, Xiang Chen, Wei Zhang, Cheng-Cheng Ye, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: about 11 years ago

10.3389/fmicb.2020.586614

Deciphering Microbial Community Dynamics and Biochemical Changes During Nyons Black Olive Natural Fermentations
Cited by: 18
Author(s): Marine Penland, Stéphanie-Marie Deutsch, Hélène Falentin, Audrey Pawtowski, Elisabeth Poirier, Giorgia Visenti, Christophe Le Meur, Marie-Bernadette Maillard, Anne Thierry, Jérôme Mounier, Monika Coton
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms22116101

Loss of Nnt Increases Expression of Oxidative Phosphorylation Complexes in C57BL/6J Hearts
Cited by: 4
Author(s): Jack Williams, Charlotte Hall, Eirini Meimaridou, Louise A. Metherell
Software Mentions: 4
Published: about 5 years ago

10.1038/srep16238

IDH mutation status is associated with a distinct hypoxia/angiogenesis transcriptome signature which is non-invasively predictable with rCBV imaging in human glioma
Cited by: 243
Author(s): Philipp Kickingereder, Felix Sahm, Alexander Radbruch, Wolfgang Wick, Sabine Heiland, Andreas von Deimling, Martin Bendszus, Benedikt Wiestler
Software Mentions: 4
Published: almost 11 years ago

10.3390/ijms21155265

New Methodology for the Identification of Metabolites of Saccharides and Cyclitols by Off-Line EC-MALDI-TOF-MS
Cited by: 3
Author(s): Gulyaim Sagandykova, Justyna Walczak-Skierska, Fernanda Monedeiro, Paweł Pomastowski
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms160921310

Gene Expression Variations of Red—White Skin Coloration in Common Carp (Cyprinus carpio)
Cited by: 19
Author(s): Xiaomin Li, Yijun Song, Gao Xiao, Bai-Han Zhu, Gui-Cai Xu, Mingyuan Sun, Jun Xiao, Shahid Mahboob, Khalid A. Al‐Ghanim, Xin Sun, Jiong-Tang Li
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2019.02474

Enhanced Microbial Interactions and Deterministic Successions During Anoxic Decomposition of Microcystis Biomass in Lake Sediment
Cited by: 7
Author(s): Yufan Wu, Peng Xing, Shuang‐Jiang Liu, Qinglong L. Wu
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2017.02099

Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities
Cited by: 32
Author(s): Marc W. Van Goethem, Thulani P. Makhalanyane, Don A. Cowan, Ángel Valverde
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.08851

Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation
Cited by: 99
Author(s): Katia Ancelin, Laurène Syx, Maud Borensztein, Noémie Ranisavljevic, Ivaylo Vassilev, Luis Briseño-Roa, Tao Liu, Eric Metzger, Nicolas Servant, Emmanuel Barillot, Chongjian Chen, Roland Schüle, Edith Heard
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.36998

Downregulation of ribosome biogenesis during early forebrain development
Cited by: 63
Author(s): Kevin F. Chau, Morgan L. Shannon, Ryann M. Fame, Erin Fonseca, Hillary Mullan, Matthew B. Johnson, Anoop K. Sendamarai, Mark W. Springel, Laurent Beaugerie, Maria K. Lehtinen
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2017.02499

Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium
Cited by: 36
Author(s): Elham Karimi, Maria João Ramos, Jorge M. S. Gonçalves, Joana R. Xavier, Margarida Reis, Rodrigo Costa
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.00380

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities
Cited by: 32
Author(s): Emilie Macke, Martijn Callens, François Massol, Isabel Vanoverberghe, Luc De Meester, Ellen Decaestecker
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2014.00352

Phenotypic profiling of ABC transporter coding genes in Myxococcus xanthus
Cited by: 5
Author(s): Jinyuan Yan, Michael D. Bradley, Jannice Friedman, Roy D. Welch
Software Mentions: 4
Published: about 12 years ago

10.3389/fmicb.2018.00945

Lactation Stage-Dependency of the Sow Milk Microbiota
Cited by: 47
Author(s): Wei Chen, Jiandui Mi, Ning Lv, Jin‐Ming Gao, Jun Cheng, Ruizhu Wu, Jingyun Ma, Tian Lan, Xindi Liao
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00635

Denitrifying Bacteria Active in Woodchip Bioreactors at Low-Temperature Conditions
Cited by: 31
Author(s): Jeonghwan Jang, Emily L. Anderson, Rodney T. Venterea, Michael J. Sadowsky, Carl J. Rosen, Gary W. Feyereisen, Satoshi Ishii
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-02761-6

Transcription Factor Networks derived from Breast Cancer Stem Cells control the immune response in the Basal subtype
Cited by: 27
Author(s): Willian A. da Silveira, Patrícia Vianna Bonini Palma, Renata Danielle Sicchieri, Rolando A R Villacis, Larissa Raquel Mouro Mandarano, Tatiane Oliveira, Heriton Mr Antonio, Jurandyr Moreira de Andrade, Valdair Francisco Muglia, Sílvia Regina Rogatto, Charles Theillet, Stanislas du Manoir, Daniel Guimarães Tiezzi
Software Mentions: 4
Published: about 9 years ago

10.1038/srep20759

Comparative transcriptome analysis of peripheral blood mononuclear cells in hepatitis B-related acute-on-chronic liver failure
Cited by: 10
Author(s): Qian Zhou, Wenchao Ding, Liangliang Jiang, Jiaojiao Xin, Tianzhou Wu, Dongyan Shi, Jing Jiang, Cao H, Lanjuan Li, Jun Li
Software Mentions: 4
Published: over 10 years ago

10.3389/fimmu.2021.701273

Immune Signature Linked to COVID-19 Severity: A SARS-Score for Personalized Medicine
Cited by: 5
Author(s): Jules Russick, Pierre-Emmanuel Foy, Nathalie Josseaume, Maxime Meylan, Nadine Benhamouda, Amos Kirilovsky, Carine El Sissy, Éric Tartour, David Smadja, Alexandre Karras, Jean‐Sébastien Hulot, Marine Livrozet, Antoine Fayol, Jean‐Benoît Arlet, Jean‐Luc Diehl, Marie-Agnès Dragon-Durey, Franck Pagès, Isabelle Cremer
Software Mentions: 4
Published: about 5 years ago

10.3390/nu13072467

Gastrointestinal Digestion of a Grape Pomace Extract: Impact on Intestinal Barrier Permeability and Interaction with Gut Microbiome
Cited by: 11
Author(s): Diego Taladrid, Dolores González de Llano, Irene Zorraquín‐Peña, Alba Tamargo, Mariana Silva, Natalia Molinero, M. Victoria Moreno‐Arribas, Begoňa Bartolomé
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.00473

Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 μvar Disease
Cited by: 44
Author(s): William L. King, Nachshon Siboni, Nathan L. R. Williams, Tim Kahlke, Khue Viet Nguyen, Cheryl Jenkins, Michael Dove, Wayne A. O’Connor, Justin R. Seymour, Maurizio Labbate
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-27376-3

Transcriptional analysis of adipose tissue during development reveals depot-specific responsiveness to maternal dietary supplementation
Cited by: 16
Author(s): Hernan P. Fainberg, Mark Birtwistle, Reham I. Alagal, Ahmad Alhaddad, Mark Pope, Graeme R. Davies, Rachel Woods, Marcos Castellanos, Sean May, Catharine A. Ortori, David A. Barrett, V.E.A. Perry, Frank Wiens, Bernd Stahl, Eline van der Beek, Harold S. Sacks, Helen Budge, Michael Symonds
Software Mentions: 4
Published: about 8 years ago

10.1038/srep24048

RXR controlled regulatory networks identified in mouse brain counteract deleterious effects of Aβ oligomers
Cited by: 27
Author(s): Kyong Nyon Nam, Anaïs Mounier, Nicholas F. Fitz, Cody M. Wolfe, Jonathan Schug, Iliya Lefterov, Radosveta Koldamova
Software Mentions: 4
Published: over 10 years ago

10.3389/fimmu.2015.00531

In-Depth Assessment of Within-Individual and Inter-Individual Variation in the B Cell Receptor Repertoire
Cited by: 70
Author(s): Jacob D. Galson, Johannes Trück, Anna Fowler, Márton Münz, Vincenzo Cerundolo, Andrew J. Pollard, Gerton Lunter, Dominic F. Kelly
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12974-020-01797-2

Glioblastoma hijacks microglial gene expression to support tumor growth
Cited by: 63
Author(s): Sybren L. N. Maas, Erik R. Abels, Lieke L van de Haar, Xuan Zhang, Liza M. Morsett, Srinjoy Sil, Joana Guedes, Pritha Sen, Shilpa Prabhakar, Suzanne E. Hickman, Charles P. Lai, David T. Ting, Xandra O. Breakefield, Marike L. D. Broekman, Joseph El Khoury
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21020440

Anisotropic Platinum Nanoparticle-Induced Cytotoxicity, Apoptosis, Inflammatory Response, and Transcriptomic and Molecular Pathways in Human Acute Monocytic Leukemia Cells
Cited by: 24
Author(s): Sangiliyandi Gurunathan, M. Jeyaraj, Hyeonwoo La, Hyunjin Yoo, Youngsok Choi, Jeong Tae, Chankyu Park, Jin‐Hoi Kim, Kwonho Hong
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.15068

Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer
Cited by: 39
Author(s): Tao Zhu, Yuanfeng Gao, Yixin Chen, Zhibin Wang, Ji‐Ye Yin, Xiao‐Yuan Mao, Xi Li, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: over 9 years ago

10.3390/ijms19103265

Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites
Cited by: 19
Author(s): Bernardus C. J. Schimmel, Juan M. Alba, Nicky Wybouw, Joris J. Glas, Tomas Meijer, Robert C. Schuurink, Merijn R. Kant
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12974-021-02264-2

Systemic inflammation alters the neuroinflammatory response: a prospective clinical trial in traumatic brain injury
Cited by: 11
Author(s): Philipp Lassarén, Caroline Lindblad, Arvid Frostell, Keri L. H. Carpenter, Mathew R. Guilfoyle, Peter J. Hutchinson, Adel Helmy, Eric Peter Thelin
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.01339

Arbuscular Mycorrhizal Symbiosis Leads to Differential Regulation of Drought-Responsive Genes in Tissue-Specific Root Cells of Common Bean
Cited by: 29
Author(s): Gustavo Henrique Recchia, Enéas Ricardo Konzen, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Siu Mui Tsai
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.682989

Microbiome and Metabolomics Reveal the Effects of Different Feeding Systems on the Growth and Ruminal Development of Yaks
Cited by: 26
Author(s): Chun Hua Huang, Fei Ge, Xixi Yao, Xian Guo, Pengjia Bao, Xiaoming Ma, Xiaoyun Wu, Min Kyung Chu, Ping Yan, Chunnian Liang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12951-020-0576-x

Core–shell nanoparticles suppress metastasis and modify the tumour-supportive activity of cancer-associated fibroblasts
Cited by: 33
Author(s): Dóra Kovács, Nóra Igaz, Annamária Marton, Andrea Rónavári, Péter Bélteky, László Bodai, Gabriella Spengler, László Tiszlavicz, Zsolt Rázga, Péter Hegyi, Csaba Vízler, Imre Boros, Zoltán Kónya, Mónika Kiricsi
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.00149

Bacterial Preferences for Specific Soil Particle Size Fractions Revealed by Community Analyses
Cited by: 81
Author(s): Michael Hemkemeyer, Anja B. Dohrmann, Bent T. Christensen, Christoph C. Tebbe
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2017.01351

Critical Role of Plasmacytoid Dendritic Cells in Regulating Gene Expression and Innate Immune Responses to Human Rhinovirus-16
Cited by: 11
Author(s): Xi Yang, Niamh M. Troy, Denise Anderson, Olga M. Pena, Jason P. Lynch, Simon Phipps, Anthony Bosco, John W. Upham
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2017.00340

Clustering of Subgingival Microbiota Reveals Microbial Disease Ecotypes Associated with Clinical Stages of Periodontitis in a Cross-Sectional Study
Cited by: 33
Author(s): Sébastien Boutin, Daniel Hagenfeld, Heiko Zimmermann, Nihad El Sayed, Tanja Höpker, Halina Greiser, Heiko Becher, Ti‐Sun Kim, Alexander H. Dalpke
Software Mentions: 4
Published: over 9 years ago

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