Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pbio.2006347

https://doi.org/10.1371/journal.pbio.2006347

Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation

Cited by: 33
Author(s): Mingming Zhao, Jaimy Joy, Weiqiang Zhou, Supriyo De, William H. Wood, Kevin G. Becker, Hongkai Ji, Ranjan Sen
Published: over 6 years ago

Software Mentions 5

bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203