Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-016-3254-5

https://doi.org/10.1186/s12864-016-3254-5

Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis

Cited by: 72
Author(s): Dongmei Ai, Ruocheng Huang, Ji Wen, Chao Li, Jianguo Zhu, Xia Li
Published: almost 8 years ago

Software Mentions 5

cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105