cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1002/evl3.13

Experimental evolution reveals that sperm competition intensity selects for longer, more costly sperm
Cited by: 44
Author(s): Joanne L. Godwin, Ramakrishnan Vasudeva, Łukasz Michalczyk, Oliver Y. Martin, Alyson J. Lumley, Tracey Chapman, Matthew J. G. Gage
Software Mentions: 6
Published: about 9 years ago

10.1093/emph/eov010

Is preterm birth a human-specific syndrome?
Cited by: 25
Author(s): Julie Baker Phillips, Patrick Abbot, Antonis Rokas
Software Mentions: 6
Published: over 11 years ago

10.1186/s13059-021-02326-x

AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Cited by: 5
Author(s): Kyle Fletcher, Lin Zhang, Juliana Gil, Rongkui Han, Keri Cavanaugh, Richard W. Michelmore
Software Mentions: 6
Published: over 5 years ago

10.12688/f1000research.21763.1

vhcub: Virus-host codon usage co-adaptation analysis
Cited by: 12
Author(s): Ali Mostafa Anwar, Mohamed Soudy, Radwa Mohamed
Software Mentions: 6
Published: over 6 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 7 years ago

10.12688/f1000research.15858.1

Visualizing balances of compositional data: A new alternative to balance dendrograms
Cited by: 13
Author(s): Thomas P. Quinn
Software Mentions: 6
Published: about 8 years ago

10.12688/f1000research.14541.1

drawProteins: a Bioconductor/R package for reproducible and programmatic generation of protein schematics
Cited by: 37
Author(s): Paul Brennan
Software Mentions: 6
Published: about 8 years ago

10.1186/s13059-020-1947-1

Assembly of hundreds of novel bacterial genomes from the chicken caecum
Cited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Software Mentions: 6
Published: over 6 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: over 6 years ago

10.12688/f1000research.10232.1

Approaches to R education in Canadian universities
Cited by: 2
Author(s): M. A. Carson, Nathan Basiliko
Software Mentions: 6
Published: almost 10 years ago

10.1093/femsec/fiz108

Diversity of tryptophan halogenases in sponges of the genus Aplysina
Cited by: 9
Author(s): Johanna Gutleben, Jasper J. Koehorst, Kyle McPherson, Shirley A. Pomponi, René H. Wijffels, Hauke Smidt, Detmer Sipkema
Software Mentions: 6
Published: about 7 years ago

10.1093/bib/bbw102

A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles
Cited by: 1
Author(s): Felicia Ng, David Ruau, Lorenz Wernisch, Berthold Göttgens
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13059-018-1407-3

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads
Cited by: 90
Author(s): Yohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido
Software Mentions: 6
Published: over 8 years ago

10.1186/s13059-017-1374-0

Epigenetic supersimilarity of monozygotic twin pairs
Cited by: 76
Author(s): Timothy E. Van Baak, Cristian Coarfa, Pierre Antoine Dugué, Giovanni Fiorito, Eleonora Laritsky, Maria S. Baker, Noah J. Kessler, Jianrong Dong, Jack D. Duryea, Matt J. Silver, Ayden Saffari, Andrew M. Prentice, Sophie E. Moore, Akram Ghantous, Michael N. Routledge, Yun Gong, Zdenko Herceg, Paolo Víneis, Gianluca Severi, John L. Hopper, Melissa C. Southey, Graham G. Giles, Roger L. Milne, Robert A. Waterland
Software Mentions: 6
Published: over 8 years ago

10.3389/fgene.2021.619611

Prognostic Risk Model of Immune-Related Genes in Colorectal Cancer
Cited by: 9
Author(s): Yuntao Qian, Jingsun Wei, Wei Lu, Fangfang Sun, Maxwell Hwang, Kai Jiang, Dongliang Fu, Xinyi Zhou, Xianglong Kong, Yaowu Zhu, Qian Xiao, Yeting Hu, Kefeng Ding
Software Mentions: 6
Published: over 5 years ago

10.1186/s13059-014-0459-2

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
Cited by: 106
Author(s): Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiaoguang Chen, Robert M. Waterhouse, Aleksey Komissarov, Michelle M. Riehle, Yogesh S. Shouche, Maria V. Sharakhova, Daniel Lawson, Nazzy Pakpour, Peter Arensburger, Victoria L M Davidson, Karin Eiglmeier, Scott J. Emrich, Phillip George, Ryan Kennedy, Shrinivasrao P. Mane, G. Maslen, Chioma Oringanje, Yumin Qi, Robert E. Settlage, Marta Tojo, José M. C. Tubío, Maria Unger, Bo Wang, Kenneth D. Vernick, José M. C. Ribeiro, Anthony A. James, Kristin Michel, Michael A. Riehle, Shirley Luckhart, Igor V. Sharakhov, Zhijian Tu
Software Mentions: 6
Published: almost 12 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: about 8 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: about 7 years ago

10.3390/genes12091300

Mitochondrial Genetic Heterogeneity in Leber’s Hereditary Optic Neuropathy: Original Study with Meta-Analysis
Cited by: 7
Author(s): Rajan Kumar Jha, Chhavi Dawar, Qurratulain Hasan, Akhilesh Pujar, Gaurav Gupta, Venugopalan Y Vishnu, Ramesh Kekunnaya, Kumarasamy Thangaraj
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2021.668311

Construction of a circRNA-Related Prognostic Risk Score Model for Predicting the Immune Landscape of Lung Adenocarcinoma
Cited by: 0
Author(s): Huawei Li, Jun Wang, Linyou Zhang
Software Mentions: 6
Published: about 5 years ago

10.1534/g3.117.300152

Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (<i>Phylloscopus collybita abietinus/P. tristis</i>)
Cited by: 4
Author(s): Venkat Talla, Faheema Kalsoom, Daria Shipilina, И. М. Марова, Niclas Backström
Software Mentions: 6
Published: over 8 years ago

10.3389/fnhum.2021.623766

Object-Location Memory Training in Older Adults Leads to Greater Deactivation of the Dorsal Default Mode Network
Cited by: 1
Author(s): Ania Mikos, Brigitta Malagurski, Franziskus Liem, Susan Mérillat, Lutz Jäncke
Software Mentions: 6
Published: over 5 years ago

10.1186/s12983-021-00410-3

Hanging by a thread: unusual nocturnal resting behaviour in a jumping spider
Cited by: 4
Author(s): Daniela C. Rößler, Massimo De Agrò, Elia Biundo, Paul S. Shamble
Software Mentions: 6
Published: over 5 years ago

10.1186/s12983-016-0174-9

Crown-of-thorns starfish have true image forming vision
Cited by: 19
Author(s): Ronald Petie, Anders Garm, Michael R. Hall
Software Mentions: 6
Published: almost 10 years ago

10.3390/ijms20061321

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling
Cited by: 14
Author(s): Gesche K. Gerresheim, Jochen Bathke, Audrey M. Michel, Dmitry E. Andreev, Lyudmila Shalamova, Oliver Roßbach, Pan Hu, Dieter Glebe, Markus Fricke, Manja Marz, Alexander Goesmann, Stephen J Kiniry, Pavel V. Baranov, Ivan N. Shatsky, Michael Niepmann
Software Mentions: 6
Published: over 7 years ago

10.1111/cns.13468

Immunotherapy choice and maintenance for generalized myasthenia gravis in China
Cited by: 12
Author(s): Chao Zhang, Bitao Bu, Huan Yang, Lihua Wang, Weibin Liu, Rui‐Sheng Duan, Meini Zhang, Pei Zeng, Chen Du, Li Yang, Fu‐Dong Shi
Software Mentions: 6
Published: almost 6 years ago

10.3389/fvets.2021.617900

Comparative Study of Free-Roaming Domestic Dog Management and Roaming Behavior Across Four Countries: Chad, Guatemala, Indonesia, and Uganda
Cited by: 18
Author(s): Charlotte Warembourg, Ewaldus Wera, Terence Odoch, Petrus Malo Bulu, Mónica Berger-González, Danilo Álvarez, Mahamat Fayiz Abakar, Filipe Maximiano Sousa, Laura Cunha Silva, Grace Alobo, Valentin Dingamnayal Bal, Alexis Leonel López Hernandez, Enos Madaye, Maria Satri Meo, Abakar Naminou, Pablo Roquel, Sonja Hartnack, Salome Dürr
Software Mentions: 6
Published: over 5 years ago

10.3389/fvets.2021.733357

Chytridiomycosis Outbreak in a Chilean Giant Frog (Calyptocephalella gayi) Captive Breeding Program: Genomic Characterization and Pathological Findings
Cited by: 5
Author(s): Mario Alvarado‐Rybak, Paz Acuña, Alexandra Peñafiel‐Ricaurte, Thomas R. Sewell, Simon J. O’Hanlon, Matthew C. Fisher, Andrés Valenzuela‐Sánchez, Andrew A. Cunningham, Claudio Soto‐Azat
Software Mentions: 6
Published: almost 5 years ago

10.3389/fimmu.2021.647209

PNOC Expressed by B Cells in Cholangiocarcinoma Was Survival Related and LAIR2 Could Be a T Cell Exhaustion Biomarker in Tumor Microenvironment: Characterization of Immune Microenvironment Combining Single-Cell and Bulk Sequencing Technology
Cited by: 20
Author(s): Zheng Chen, Ming Yu, Jiuliang Yan, Lei Guo, Bo Zhang, Shuang Liu, LJ Jin, Wentao Zhang, Bing Zhou, Jie Gao, Zhixu Yang, Xiaoqiang Li, Ji Zhou, Jia Fan, Qing–Hai Ye, Hui Li, Yongfeng Xu, Xiao Ye
Software Mentions: 6
Published: over 5 years ago

10.3389/fvets.2021.661063

Outbreaks of Vector-Borne and Zoonotic Diseases Are Associated With Changes in Forest Cover and Oil Palm Expansion at Global Scale
Cited by: 74
Author(s): Serge Morand, Claire Lajaunie
Software Mentions: 6
Published: over 5 years ago

10.3389/fvets.2021.652015

Rein Tension Signals Elicit Different Behavioral Responses When Comparing Bitted Bridle and Halter
Cited by: 4
Author(s): Marie Eisersiö, Anna Byström, Jenny Yngvesson, Paolo Baragli, Antonio Lanatá, Agneta Egenvall
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2020.00435

Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells
Cited by: 10
Author(s): Stephanie S Pavlovich, Tamarand L. Darling, Adam J. Hume, Robert A. Davey, Feng Feng, Elke Mühlberger, Thomas B. Kepler
Software Mentions: 6
Published: over 6 years ago

10.3389/fvets.2020.594825

Slightly and Moderately Lame Cows in Tie Stalls Behave Differently From Non-lame Controls. A Matched Case-Control Study
Cited by: 1
Author(s): Johanna Karin Bernhard, Beatriz Vidondo, Rahel Lisa Achermann, Rahel Rediger, Dimitri Stucki, Kerstin Müller, Adrian Steiner
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2018.01634

Robust B Cell Responses Predict Rapid Resolution of Lyme Disease
Cited by: 22
Author(s): Lisa K. Blum, Julia Z. Adamska, Dale S. Martin, Alison W. Rebman, Serra E. Elliott, Richard R.L. Cao, Monica E. Embers, Mark J. Soloski, William H. Robinson
Software Mentions: 6
Published: about 8 years ago

10.3389/fimmu.2019.02568

Gene Expression-Based Identification of Antigen-Responsive CD8+ T Cells on a Single-Cell Level
Cited by: 22
Author(s): Yannick F. Fuchs, Virag Sharma, Anne Eugster, Gloria Kraus, Robert Morgenstern, Andreas Dahl, Susanne Reinhardt, A. Petzold, Annett Lindner, Doreen Löbel, Ezio Bonifacio
Software Mentions: 6
Published: almost 7 years ago

10.3389/fspor.2020.518148

A Systematic Review and Meta-Analysis on the Longitudinal Effects of Unilateral Knee Extension Exercise on Muscle Strength
Cited by: 1
Author(s): Ekin Altan, Svenja Elizabeth Seide, Ismail Bayram, Leonardo Gizzi, Hayri Ertan, Oliver Röhrle
Software Mentions: 6
Published: almost 6 years ago

10.3389/fpubh.2021.691680

Psychological and Socio-Economical Determinants of Health: The Case of Inner German Migration
Cited by: 1
Author(s): Bjarne Schmalbach, Ileana Schmalbach, Christoph Kasinger, Katja Petrowski, Elmar Brähler, Markus Zenger, Yve Stöbel-Richter, E. Richter, Hendrik Berth
Software Mentions: 6
Published: about 5 years ago

10.3389/fimmu.2020.00978

Pseudozyma Priming Influences Expression of Genes Involved in Metabolic Pathways and Immunity in Zebrafish Larvae
Cited by: 8
Author(s): Prabhugouda Siriyappagouder, Jorge Galindo-Villegas, Anusha K. S. Dhanasiri, Qirui Zhang, Victoriano Mulero, Viswanath Kiron, Jorge Manuel de Oliveira Fernandes
Software Mentions: 6
Published: over 6 years ago

10.3389/fpsyg.2019.02243

Pragmatic Language Skills: A Comparison of Children With Cochlear Implants and Children Without Hearing Loss
Cited by: 20
Author(s): Michaela Socher, Björn Lyxell, Rachel Ellis, Malin Gärskog, Ingrid Hedström, Malin Wass
Software Mentions: 6
Published: almost 7 years ago

10.3389/fimmu.2021.671201

Identification and Validation of the Signatures of Infiltrating Immune Cells in the Eutopic Endometrium Endometria of Women With Endometriosis
Cited by: 22
Author(s): Xinglong Wu, Jin-Jiao Chen, Huiling Zhou, Yu Wu, Fei Lin, Jing Shi, Hong-Zhen Wu, Hai-Qun Xiao, Wei Wang
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyg.2020.00372

Community Characteristics, Victimization, and Psychological Adjustment Among School-Aged Adopted Children With Lesbian, Gay, and Heterosexual Parents
Cited by: 7
Author(s): Abbie E. Goldberg, Randi L. Garcia
Software Mentions: 6
Published: over 6 years ago

10.3389/fpsyg.2018.01761

The Role of Musical Attributes in Music-Induced Analgesia: A Preliminary Brief Report
Cited by: 10
Author(s): Krzysztof Basiński, Agata Zdun-Ryżewska, Mikołaj Majkowicz
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12935-021-02027-2

Characterization of a ferroptosis and iron-metabolism related lncRNA signature in lung adenocarcinoma
Cited by: 48
Author(s): Jie Yao, Xiao Chen, Xiao Liu, Rui Li, Xi-Jia Zhou, Yi-Qing Qu
Software Mentions: 6
Published: about 5 years ago

10.3389/fimmu.2020.00715

Hepatic Transcriptome Analysis Identifies Divergent Pathogen-Specific Targeting-Strategies to Modulate the Innate Immune System in Response to Intramammary Infection
Cited by: 15
Author(s): A. Heimes, J. Brodhagen, Rosemarie Weikard, Hans‐Martin Seyfert, Doreen Becker, M. Meyerholz, Wolfram Petzl, Holm Zerbe, Martina Hoedemaker, L. Rohmeier, Hans‐Joachim Schuberth, Marion Schmicke, Susanne Engelmann, Christa Kühn
Software Mentions: 6
Published: over 6 years ago

10.1186/s12879-016-1361-1

Killer-cell Immunoglobulin-like Receptor (KIR) gene profiles modify HIV disease course, not HIV acquisition in South African women
Cited by: 13
Author(s): Vivek Naranbhai, Debra de Assis Rosa, Lise. Werner, Roshila Moodley, Heather A. Hong, Ayesha B. M. Kharsany, Koleka Mlisana, Sengeziwe Sibeko, Nigel Garrett, Denis Chopera, William H. Carr, Quarraisha Abdool Karim, Adrian V. S. Hill, Salim S. Abdool Karim, Marcus Altfeld, Clive M. Gray, Thumbi Ndung’u
Software Mentions: 6
Published: over 10 years ago

10.1093/icb/icaa138

Epigenetics of Animal Personality: DNA Methylation Cannot Explain the Heritability of Exploratory Behavior in a Songbird
Cited by: 11
Author(s): Kees van Oers, Bernice Sepers, William Sies, Fleur Gawehns, Koen Verhoeven, Veronika N. Laine
Software Mentions: 6
Published: almost 6 years ago

10.1001/jamanetworkopen.2021.5723

Preconception Thyrotropin Levels and Risk of Adverse Pregnancy Outcomes in Chinese Women Aged 20 to 49 Years
Cited by: 13
Author(s): Ying Yang, Tonglei Guo, Jinrong Fu, Jian Kuang, Yuanyuan Wang, Zhang Ya, Honggang Zhang, Yuan He, Zuoqi Peng, Qiaomei Wang, Haiping Shen, Yiping Zhang, Donghai Yan, Xu Ma, Haixia Guan
Software Mentions: 6
Published: over 5 years ago

10.1001/jamanetworkopen.2021.8075

Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare Claims
Cited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: over 5 years ago

10.1007/s10886-020-01148-8

Phloem Metabolites of Prunus Sp. Rather than Infection with Candidatus Phytoplasma Prunorum Influence Feeding Behavior of Cacopsylla pruni Nymphs
Cited by: 9
Author(s): Jannicke Gallinger, Jürgen Gross
Software Mentions: 6
Published: over 6 years ago

10.1002/minf.202000005

Using Machine Learning Methods and Structural Alerts for Prediction of Mitochondrial Toxicity
Cited by: 30
Author(s): Jennifer Hemmerich, Florentina Troger, Barbara Füzi, Gerhard Ecker
Software Mentions: 6
Published: over 6 years ago

10.3390/toxins11010019

Interannual Variability of Dinophysis acuminata and Protoceratium reticulatum in a Chilean Fjord: Insights from the Realized Niche Analysis
Cited by: 23
Author(s): Catharina Alves‐de‐Souza, José Luis Iriarte, Jorge I. Mardones
Software Mentions: 6
Published: over 7 years ago

10.3390/toxics9070164

A Multidisciplinary Approach for the Assessment of Origin, Fate and Ecotoxicity of Metal(loid)s from Legacy Coal Mine Tailings
Cited by: 2
Author(s): Honorine Gauthier-Manuel, Diane Radola, Flavien Choulet, Martine Buatier, Raphaël Vauthier, Tatiana Morvan, Walter Chavanne, Frédéric Gimbert
Software Mentions: 6
Published: about 5 years ago

10.7150/thno.54917

Single-cell transcriptome profiling reveals vascular endothelial cell heterogeneity in human skin
Cited by: 36
Author(s): Qingyang Li, Zhenlai Zhu, Lei Wang, Yi‐Ting Lin, Hui Fang, Jie Lei, Tianyu Cao, Gang Wang, Erle Dang
Software Mentions: 6
Published: over 5 years ago

10.7150/thno.55946

Multi-omics study reveals that statin therapy is associated with restoration of gut microbiota homeostasis and improvement in outcomes in patients with acute coronary syndrome
Cited by: 28
Author(s): Xiaomin Hu, Hanyu Li, Xinyue Zhao, Ronggang Zhou, Honghong Liu, Yiting Sun, Yue Fan, Yanan Shi, Shushan Qiao, Shuang‐Jiang Liu, Hongwei Liu, Shuyang Zhang
Software Mentions: 6
Published: over 5 years ago

10.1242/jeb.220426

Microclimate buffering and thermal tolerance across elevations in a tropical butterfly
Cited by: 35
Author(s): Gabriela Montejo‐Kovacevich, Simon H. Martin, Joana I. Meier, Caroline Bacquet, Monica Monllor, Chris D. Jiggins, Nicola J. Nadeau
Software Mentions: 6
Published: over 6 years ago

10.1242/jeb.242168

Limited heat tolerance in a cold-adapted seabird: implications of a warming Arctic
Cited by: 18
Author(s): Emily S. Choy, Ryan S. O’Connor, H. Grant Gilchrist, Anna L. Hargreaves, Oliver P. Love, François Vézina, Kyle H. Elliott
Software Mentions: 6
Published: about 5 years ago

10.1093/jxb/erx018

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture
Cited by: 50
Author(s): Brian Farneti, Mario Di Guardo, Iuliia Khomenko, Luca Cappellin, Franco Biasioli, Riccardo Velasco, Fabrizio Costa
Software Mentions: 6
Published: over 9 years ago

10.7150/thno.41219

ATRX/EZH2 complex epigenetically regulates FADD/PARP1 axis, contributing to TMZ resistance in glioma
Cited by: 55
Author(s): Bo Han, Xiangqi Meng, Pengfei Wu, Ziwei Li, Siyi Li, Yangong Zhang, Caijun Zha, Qile Ye, Chuanlu Jiang, Jinquan Cai, Tao Jiang
Software Mentions: 6
Published: over 6 years ago

10.1007/s00122-021-03832-z

Paternal outcrossing success differs among faba bean genotypes and impacts breeding of synthetic cultivars
Cited by: 6
Author(s): Lisa Brünjes, Wolfgang Link
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.ppat.1003450

Novel Immunomodulators from Hard Ticks Selectively Reprogramme Human Dendritic Cell Responses
Cited by: 64
Author(s): Stephen G. Preston, Juraj Majtán, Chrisoula Kouremenou, Oliwia Ryśnik, Lena Fatou Burger, Alejandro Cabezas-Cruz, Maylin Chiong Guzman, Miles A. Nunn, Guido C. Paesen, Patricia A. Nuttall, Jonathan M. Austyn
Software Mentions: 6
Published: about 13 years ago

10.1016/j.molmet.2020.101067

Gut microbiota impairs insulin clearance in obese mice
Cited by: 24
Author(s): Kevin P. Foley, Soumaya Zlitni, Brittany M. Duggan, Nicole G. Barra, Fernando F. Anhê, Joseph F. Cavallari, Brandyn D. Henriksbo, Cassandra Y. Chen, Michael Huang, Trevor C. Lau, Roxanne Plante, Michael Schwab, André Marette, Jonathan D. Schertzer
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.ppat.1006967

KSHV induces immunoglobulin rearrangements in mature B lymphocytes
Cited by: 28
Author(s): Jennifer Totonchy, Jessica M. Osborn, Amy Chadburn, Romina Nabiee, Lissenya B. Argueta, Geoffrey Mikita, Ethel Cesarman
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.ppat.1007187

Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics
Cited by: 39
Author(s): Albin Fontaine, Sébastian Lequime, Isabelle Moltini-Conclois, Davy Jiolle, Isabelle Leparc-Goffart, Robert C. Reiner, Louis Lambrechts
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.ppat.1007273

Trichuris muris whey acidic protein induces type 2 protective immunity against whipworm
Cited by: 18
Author(s): Neima Briggs, Junfei Wei, Leroy Versteeg, Bin Zhan, Brian Keegan, Ashish Damania, Jeroen Pollet, Kelly S. Hayes, Coreen M. Beaumier, Christopher A. Seid, Jamie Leong, Richard K. Grencis, María Elena Bottazzi, K. Jagannadha Sastry, Peter J. Hotez
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.ppat.1008179

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand
Cited by: 24
Author(s): Morgane Rolland, Sodsai Tovanabutra, Bethany L. Dearlove, Yifan Li, Christopher L. Owen, Éric Lewitus, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Raabya Rossenkhan, Jan Phillipus Lourens Labuschagne, Paul T. Edlefsen, Daniel B. Reeves, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Leigh Anne Eller, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-45388-5

Identifying niche and fitness dissimilarities in invaded marine macroalgal canopies within the context of contemporary coexistence theory
Cited by: 9
Author(s): Graham Epstein, Stephen J. Hawkins, Dan A. Smale
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-45365-y

Xylella fastidiosa: climate suitability of European continent
Cited by: 56
Author(s): Gottfried Martin, Astrid Cruaud, Jean‐Claude Streito, Jean‐Yves Rasplus, Jean‐Pierre Rossi
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-45844-2

Intracellular Zn2+ transients modulate global gene expression in dissociated rat hippocampal neurons
Cited by: 35
Author(s): Lynn Sanford, Margaret C. Carpenter, Amy E. Palmer
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-49027-x

Association of Aggresomes with Survival Outcomes in Pediatric Medulloblastoma
Cited by: 4
Author(s): Maha Yehia, Hala Taha, Asmaa Salama, Nada Amer, Amal Mosaab, Omneya Hassanain, Amal Refaat, Dina Yassin, Ahmed Elhemaly, Soha Ahmed, Mohamed El-Beltagy, Osama Shaalan, Shahenda El‐Naggar
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-50248-3

Integrated network analysis identifies hsa-miR-4756-3p as a regulator of FOXM1 in Triple Negative Breast Cancer
Cited by: 6
Author(s): Yuanliang Gu, Wenjuan Wang, Xuyao Wang, Hong-Yi Xie, Xiaojuan Ye, Peng Shu
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-019-50811-y

Pollinators enhance crop yield and shorten the growing season by modulating plant functional characteristics: A comparison of 23 canola varieties
Cited by: 21
Author(s): George C. Adamidis, Ralph V. Cartar, Andony Melathopoulos, Stephen F. Pernal, Shelley E Hoover
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-019-50839-0

Understanding the phyllosphere microbiome assemblage in grape species (Vitaceae) with amplicon sequence data structures
Cited by: 36
Author(s): Prashant Singh, Sylvain Santoni, Audrey Weber, Patrice This, Jean‐Pierre Péros
Software Mentions: 6
Published: almost 7 years ago

10.1186/s13023-019-1020-x

The mutational and phenotypic spectrum of TUBA1A-associated tubulinopathy
Cited by: 46
Author(s): Moritz Hebebrand, Ulrike Hüffmeier, Regina Trollmann, Ute Hehr, Steffen Uebe, Arif B. Ekici, Cornelia Kraus, Mandy Krumbiegel, André Reis, Christian T. Thiel, Bernt Popp
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-019-50864-z

Circular RNA differential expression in blood cell populations and exploration of circRNA deregulation in pediatric acute lymphoblastic leukemia
Cited by: 62
Author(s): Enrico Gaffo, Elena Boldrin, Anna Dal Molin, Silvia Bresolin, Annagiulia Bonizzato, Luca Trentin, Chiara Frasson, Klaus‐Michael Debatin, Lueder Hinrich Meyer, Geertruy te Kronnie, Stefania Bortoluzzi
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-019-51452-x

NADH dehydrogenases Nuo and Nqr1 contribute to extracellular electron transfer by Shewanella oneidensis MR-1 in bioelectrochemical systems
Cited by: 15
Author(s): Cody S. Madsen, Michaela A. TerAvest
Software Mentions: 6
Published: almost 7 years ago

10.1111/mpp.12819

Population genomics of an outbreak of the potato late blight pathogen,<i>Phytophthora infestans</i>, reveals both clonality and high genotypic diversity
Cited by: 14
Author(s): Sundy Maurice, Melanie Montes, Bent Nielsen, Lars Bødker, Michael D. Martin, Carina Grøntved Jønck, Rasmus Kjøller, Søren Rosendahl
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-019-52549-z

Rectal swabs are a reliable proxy for faecal samples in infant gut microbiota research based on 16S-rRNA sequencing
Cited by: 29
Author(s): Marta Reyman, Marlies A. van Houten, Kayleigh Arp, Elisabeth A. M. Sanders, Debby Bogaert
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-019-52899-8

Multiplex analysis of 40 cytokines do not allow separation between endometriosis patients and controls
Cited by: 11
Author(s): Tamara Knific, Dmytro Fishman, Andrej Vogler, Manuela Gstöttner, René Wenzl, Hedi Peterson, Tea Lanišnik Rižner
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-019-54098-x

Obesity during pregnancy results in maternal intestinal inflammation, placental hypoxia, and alters fetal glucose metabolism at mid-gestation
Cited by: 48
Author(s): Jessica G. Wallace, Christian J. Bellissimo, Erica Yeo, Yu Xia, Jim Petrik, Michael G. Surette, Dawn M. E. Bowdish, Deborah M. Sloboda
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-020-58493-7

VGLL3 is a prognostic biomarker and correlated with clinical pathologic features and immune infiltrates in stomach adenocarcinoma
Cited by: 13
Author(s): Lihua Zhang, Longhai Li, Yong Mao, Hua Dong
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-89531-7

Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformatics
Cited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-60476-7

EPDR1 up-regulation in human colorectal cancer is related to staging and favours cell proliferation and invasiveness
Cited by: 11
Author(s): Francisco Gimeno-Valiente, Ángela L. Riffo‐Campos, Guillermo Ayala, Noelia Tarazona, Fernanda Mariel Rodríguez, Marisol Huerta, J. Montón-Bueno, Susana Roselló, Luís Franco, Gerardo López-Rodas, Josefa Castillo
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-60929-z

Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef
Cited by: 11
Author(s): Danielle C. Claar, Kristina L. Tietjen, Kieran Cox, Ruth D. Gates, Julia K. Baum
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-63039-y

Inter-individual differences in foveal shape in a scavenging raptor, the black kite Milvus migrans
Cited by: 11
Author(s): Simon Potier, Mindaugas Mitkus, Thomas J. Lisney, Pierre‐François Isard, Thomas Dulaurent, Marielle Mentek, Raphaël Cornette, David Schikorski, Almut Kelber
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-63194-2

Trace elements and C and N isotope composition in two mushroom species from a mine-spill contaminated site
Cited by: 5
Author(s): Marta Gil-Martínez, Carmen M. Navarro‐Fernández, J.M. Murillo, María Teresa Domínguez, Teodoro Marañón
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-62911-1

Analyzing the impact of Mycobacterium tuberculosis infection on primary human macrophages by combined exploratory and targeted metabolomics
Cited by: 25
Author(s): Frank Vrieling, Sarantos Kostidis, Herman P. Spaink, Mariëlle C. Haks, Oleg A. Mayboroda, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-63880-1

Global trends in mangrove forest fragmentation
Cited by: 135
Author(s): Dale Bryan-Brown, Rod M. Connolly, Daniel R. Richards, María Fernanda Adame, Daniel A. Friess, Christopher J. Brown
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-64516-0

Cyto-Feature Engineering: A Pipeline for Flow Cytometry Analysis to Uncover Immune Populations and Associations with Disease
Cited by: 7
Author(s): Amy Fox, Taru Dutt, Burton Karger, Mauricio Rojas, Andrés Obregón-Henao, G. Brooke Anderson, Marcela Henao-Tamayo
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-65089-8

Immunorthodontics: in vivo gene expression of orthodontic tooth movement
Cited by: 28
Author(s): Yehuda Klein, Omer Fleissig, David Polak, Yechezkel Barenholz, Ofer Mandelboim, Stella Chaushu
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-90735-0

Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: over 5 years ago

10.3390/nu12061699

Dietary Diversity among Chinese Residents during the COVID-19 Outbreak and Its Associated Factors
Cited by: 115
Author(s): Aihua Zhao, Zhongyu Li, Yalei Ke, Shanshan Huo, Yang Ma, Yumei Zhang, Jian Zhang, Zhiguo Ren
Software Mentions: 6
Published: about 6 years ago

10.1007/s00572-021-01042-5

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit
Cited by: 21
Author(s): Verena Säle, Javier Palenzuela, Concepción Azcón–Aguilar, Iván Sánchez-Castro, Gladstone Alves da Silva, Benjamin Seitz, Ewald Sieverding, Marcel G. A. van der Heijden, Fritz Oehl
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-65223-6

Using an Innovation Arena to compare wild-caught and laboratory Goffin’s cockatoos
Cited by: 19
Author(s): Theresa Rößler, Berenika Mioduszewska, Mark O’Hara, Ludwig Huber, Dewi M. Prawiradilaga, Alice M. I. Auersperg
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-66224-1

Genomic deregulation of PRMT5 supports growth and stress tolerance in chronic lymphocytic leukemia
Cited by: 5
Author(s): Ann-Kathrin Schnormeier, Claudia Pommerenke, Maren Kaufmann, Hans Drexler, Max Koeppel
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-66407-w

An understanding of third-party friendships in a tolerant macaque
Cited by: 12
Author(s): Jamie Whitehouse, Hélène Meunier
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-82666-7

Identification of sources resistant to a virulent Fusarium wilt strain (VCG 0124) infecting Cavendish bananas
Cited by: 14
Author(s): R Thangavelu, M. Saraswathi, S. Uma, M. Loganathan, S. Backiyarani, P. Durai, Esack Edwin Raj, Narayanan Marimuthu, G. Kannan, Rony Swennen
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-80533-5

Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.2452

Canopy position has a profound effect on soybean seed composition
Cited by: 27
Author(s): Steven C. Huber, Kunzhi Li, Randall L. Nelson, Alexander Ulanov, Catherine M. DeMuro, Ivan Baxter
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41598-021-83110-6

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community
Cited by: 13
Author(s): Hye Kyung Lee, Ludwig Knabl, Lisa Pipperger, André Volland, Priscilla A. Furth, Keunsoo Kang, Harold E. Smith, Ludwig Knabl, Romuald Bellmann, Christina Bernhard, Norbert Kaiser, Hannes Gänzer, Mathias Ströhle, Andreas Walser, Dorotheé von Laer, Lothar Hennighausen
Software Mentions: 6
Published: over 5 years ago

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