cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-93570-5

Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profiles
Cited by: 18
Author(s): Emily J. Ross, Emily R. Gordon, Hanna Sothers, Roshan Darji, Oakley Baron, Dustin W. Haithcock, Balabhaskar Prabhakarpandian, Kapil Pant, R Myers, Sara J. Cooper, Nancy J. Cox
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-020-69160-2

Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: about 6 years ago

10.3389/fmolb.2021.657087

N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer Prognosis
Cited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0245639

Are we missing the forest for the trees? Conspecific negative density dependence in a temperate deciduous forest
Cited by: 3
Author(s): Kathryn E. Barry, Stefan A. Schnitzer
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers13122955

PLEK2, RRM2, GCSH: A Novel WWOX-Dependent Biomarker Triad of Glioblastoma at the Crossroads of Cytoskeleton Reorganization and Metabolism Alterations
Cited by: 10
Author(s): Żaneta Kałuzińska, Damian Kołat, Andrzej K. Bednarek, Elżbieta Płuciennik
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.8303

TRANSPARENT TESTA GLABRA 1 participates in flowering time regulation in<i>Arabidopsis thaliana</i>
Cited by: 5
Author(s): Barbara A M Paffendorf, Rawan Qassrawi, Andrea M Meys, Laura Trimborn, Andrea Schrader
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.ppat.1009933

Trypanosoma brucei triggers a broad immune response in the adipose tissue
Cited by: 11
Author(s): Henrique Machado, Tiago Bizarra-Rebelo, Mariana Sequeira, Sandra Trindade, Tãnia Carvalho, Filipa Rijo‐Ferreira, Barbara Rentroia‐Pacheco, Karine Serre, Luísa M. Figueiredo
Software Mentions: 8
Published: about 5 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: over 7 years ago

10.3390/cancers13112782

Early Survival Prediction Framework in CD19-Specific CAR-T Cell Immunotherapy Using a Quantitative Systems Pharmacology Model
Cited by: 16
Author(s): Anna Mueller‐Schoell, Nahum Puebla-Osorio, Robin Michelet, Michael R. Green, Annette Künkele, Wilhelm Huisinga, Paolo Strati, Beth Chasen, Sattva S. Neelapu, Cassian Yee, Charlotte Kloft
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-44597-2

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule
Cited by: 3
Author(s): Francisco Requena, Helena G Asenjo, Guillermo Barturen, Jordi Martorell-Marugán, Pedro Carmona-Sáez, David Landeira
Software Mentions: 8
Published: over 7 years ago

10.1007/s15010-021-01599-5

COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study
Cited by: 56
Author(s): Sheryl Ann Abdukahil, Ryuzo Abe, Laurent Abel, Lara Absil, Andrew Acker, Shingo Adachi, Elisabeth Hannah Adam, Diana Adrião, Kate Ainscough, Ali Ait Hssain, Younes Ait Tamlihat, Takako Akimoto, Tala Al-dabbous, Abdulrahman Al‐Fares, Eman Al Qasim, Razi Alalqam, Beatrice Alex, Kévin Alexandre, Huda Alfoudri, Kazali Enagnon Alidjnou, Jeffrey Aliudin, Clotilde Allavena, Nathalie Allou, João Melo Alves, Rita Vieira Alves, Maria João Amaral, Heidi S. M. Ammerlaan, Phoebe Ampaw, Roberto Andini, Claire Andréjak, Andrea Angheben, François Angoulvant, Séverine Ansart, Massimo Antonelli, Carlos Brito, Yaseen M. Arabi, Irene Aragão, Antonio Arcadipane, Lukas Arenz, Jean‐Benoît Arlet, Christel Arnold-Day, Lovkesh Arora, Élise Artaud-Macari, Ángel Asensio, Jean Baptiste Assié, Anika Atique, Johann Auchabie, Hugues Aumaître, Laurène Azemar, Cécile Azoulay, Benjamin Bach, Delphine Bachelet, J Kenneth Baillie, Erica Bak, Agamemnon Bakakos, Firouzé Bani‐Sadr, Renata Barbalho, William Barclay, Michaela Barnikel, Audrey Barrelet, Cleide Barrigoto, Romain Basmaci, Diego Rincón, Alexandra Bedossa, Sylvie Behilill, Aleksandr Beljantsev, David Bellemare, Anna Beltrame, Marine Beluze, Nicolas Benech, Dehbia Benkerrou, Suzanne Bennett, Luís Bento, Jan-Erik Berdal, Delphine Bergeaud, Lorenzo Bertolino, Simon Bessis, Sybille Bevilcaqua, Krishna Bhavsar, Felwa Bin Humaid, F. Bissuel, Patrick Biston, Laurent Bitker, Pablo Blanco-Schweizer, Mathieu Blot, Filomena Boccia, Debby Bogaert, François Bompart, Gareth Booth, Diogo Borges, R. Borie, Jeannet C. Bos, Hans Martin Bosse, Élisabeth Botelho-Nevers, Lila Bouadma, Olivier Bouchaud, Sabelline Bouchez, Dounia Bouhmani, D. Bouhour, Kévin Bouiller, Laurence Bouillet, Camille Bouisse, Anne Sophie Boureau, Maude Bouscambert, Jason Bouziotis, Bianca Boxma, Marielle Boyer-Besseyre, Maria Boylan, Cynthia Braga, Timo Brandenburger, Luca Brazzi, Dorothy Breen, Patrick J. Breen, Kathy Brickell, Nicolas Brozzi, Nina Buchtele, Christian Buesaquillo, Polina Bugaeva, Marielle Buisson, Erlina Burhan, Ingrid G. Bustos, Denis Butnaru, Sheila Cárcel, André Cabie, Susana Cabral, Eder Cáceres, Mia Callahan, Kate Calligy, José Andrés Calvache, João Camões, Valentine Campana, Paul Campbell, Cecilia Canepa, Mireia Cantero, P. Caraux-Paz, Filipa Cardoso, Filipe S. Cardoso, Sofia Cardoso, Simone Carelli, Nicolas Carlier, Gayle Carney, Chloe Carpenter, Marie-Christine Carret, François Martin Carrier, Gail Carson, Maire-Laure Casanova, Mariana Cascão, José Casimiro, Bailey Cassandra, Silvia Castañeda, Nidyanara Castanheira, Guylaine Castor-Alexandre, Henry Castrillón, Ivo Castro, Ana Catarino, François-Xavier Catherine, Roberta Figueiredo Cavalin, Giulio Giovanni Cavalli, Alexandros Cavayas, Adrián Ceccato, Minerva Cervantes-Gonzalez, Anissa Chair, Catherine Chakveatze, Adrienne Chan, Meera Chand, Julie Chas, Camille Chassin, Anjellica Chen, Yih‐Sharng Chen, Matthew P Cheng, Antoine Chéret, Thibault Chiarabini, Julian Chica, Catherine Chirouze, Davide Chiumello, Hwa Jin Cho, Sung Min Cho, Bernard Cholley, José Pedro Cidade, José Miguel Cisneros Herreros, Barbara Wanjiru Citarella, Anna Ciullo, Jennifer Clarke, Sara Clohisey, Cassidy Codan, Caitriona Cody, Alexandra Coelho, Gwenhaël Colin, Michael Collins, Sebastiano Maria Colombo, Pamela Combs, Jane Connelly, Marie Connor, Anne Conrad, Sofía Contreras, Graham Cooke, Mary Copland, Hugues Cordel, Amanda Corley, Sarah Cormican, Sabine Cornelis, Arianne Joy Corpuz, Grégory Corvaisier, Camille Couffignal, Sandrine Couffin‐Cadiergues, R Courtois, Charles Crepy D’Orleans, Sabine Croonen, Gloria Crowl, Jonathan Crump, Claudina Cruz, Marc Csete, Alberto Cucino, Caroline Cullen, Matthew J. Cummings, Gerard F. Curley, Elodie Curlier, Paula Custódio, Frédérick D’Aragon, Ana da Silva Filipe, Charlène Da Silveira, Éric D’Ortenzio, Al-Awwab M. Dabaliz, Andrew Dagens, Heidi J. Dalton, Jo Ann Dalton, Nick Daneman, Emmanuelle A. Dankwa, Jorge Dantas, Nathalie De Castro, Diego de Mendoza, Rafael Freitas de Oliveira França, Rosanna De Rosa, Thushan I. de Silva, Peter de Vries, David A. Dean, Marie‐Pierre Debray, William Dechert, Lauren Deconninck, Romain Decours, Isabelle Delacroix, K. Delavigne, Ionna Deligiannis, Andrea Dell’Amore, Pierre Delobel, Élisa Demonchy, Emmanuelle Denis, Dominique Deplanque, Pieter Depuydt, Mehul Desai, Diane Descamps, Mathilde Desvallée, Santi Dewayanti, Alpha Diallo, S. Diamantis, André Dias, Juan José Díaz, Rodrigo Díaz, Kévin Didier, Jean‐Luc Diehl, Willem Dieperink, Jérôme Dimet, Vincent Dinot, Alphonsine Diouf, Yael Dishon, Félix Djossou, Annemarie B Docherty, Andy Dong, Christl A. Donnelly, Maria Donnelly, Chloe Donohue, Céline Dorival, James J. Douglas, Renée A. Douma, Nathalie Dournon, Triona Downer, Mark Downing, Tom Drake, Vincent Dubée, François Dubos, Alexandra Ducancelle, Susanne Dudman, Jake Dunning, Emanuele Durante Mangoni, Silvia Duranti, Lucian A. Durham, Bertrand Dussol, Xavier Duval, Anne Margarita Dyrhol-Riise, Carla Eira, José Ernesto Vidal, Mohammed El Sanharawi, Subbarao Elapavaluru, Brigitte Elharrar, Natalie Elkheir, Jacobien Ellerbroek, Rachael Ellis, Philippine Eloy, Tarek Elshazly, Isabelle Enderle, Ilka Engelmann, Vincent Enouf, Olivier Épaulard, Mariano Esperatti, Hélène Espérou, Marina Esposito-Farèse, João Estêvão, Manuel Etienne, Manuel Etienne, Nadia Ettalhaoui, Anna Greti Everding, Mirjam Evers, Isabelle Fabre, Amna Faheem, Arabella Fahy, Cameron J Fairfield, Pedro Faria, Nataly Farshait, Arie Zainul Fatoni, Karine Faure, Mohamed Fayed, Niamh Feely, Jorge Fernandes, Marília Andreia Fernandes, S. Fernandes, Joana Ferrão, Eglantine Ferrand Devouge, Mário Ferraz, Benigno Ferreira, Ricard Ferrer, Claudia Figueiredo-Mello, C. Flateau, Tom Fletcher, Letizia Lucia Florio, Claire Foley, Victоr Fоmin, Cláudio Duarte Fonseca, Tatiana Fonseca, Patricia Fontela, Simon Forsyth, Giuseppe Foti, Erwan Fourn, Rob Fowler, Diego Franch-Llasat, Christophe Fraser, John F. Fraser, Marcela Vieira Freire, Ana Freitas Ribeiro, Caren Friedrich, Stéphane Fry, Nora Fuentes, Masahiro Fukuda, Joan Gómez-Junyent, Valérie Gaborieau, Benoît Gachet, Rostane Gaci, Massimo Gagliardi, Jean-Charles Gagnard, Amandine Gagneux‐Brunon, Sérgio Gaião, Phil Gallagher, Elena Curto, Carrol Gamble, A.R. Garan, Esteban García-Gallo, Rebekha Garcia, Denis Garot, Valérie Garrait, Nathalie Gault, Aisling Gavin, Alexandre Gaymard, Johannes Gebauer, Louis Gerbaud Morlaes, Nuno Germano, Jade Ghosn, Marco Giani, Carlo Giaquinto, Jess Gibson, Tristan Gigante, Morgane Gilg, Guillermo Giordano, Michelle Girvan, Valérie Gissot, Gezy Giwangkancana, Daniel Glikman, Petr Glybochko, Eric Gnall, Geraldine Goco, François Goehringer, Siri Goepel, Jean‐Christophe Goffard, Jonathan L. Golob, Isabelle Gorenne, Cécile Goujard, Tiphaine Goulenok, Margarite Grable, E. Wilson Grandin, Pascal Granier, Giacomo Grasselli, Christopher Green, William Greenhalf, S. Greffe, Domenico Luca Grieco, Matthew Griffee, Fiona Griffiths, Ioana Grigoraş, Albert Groenendijk, Anja Grosse Lordemann, Heidi Gruner, Yusing Gu, Jérémie Guedj, Dewi Guellec, Anne‐Marie Guerguerian, Daniela Guerreiro, Romain Guéry, Anne Guillaumot, Laurent Guilleminault, Thomas Guimard, Daniel A. Haber, Sheeba Hakak, Matthew Hall, Sophie Halpin, Ansley Hamer, Rébecca Hamidfar, Terese Hammond, Hayley Hardwick, Kristen Harley, Ewen M Harrison, Janet Harrison, Leanne Hays, Jan Heerman, Lars Heggelund, Ross Hendry, Martina Hennessy, Aquiles R. Henriquez-Trujillo, Maxime Hentzien, Jaime Hernández-Montfort, Astarini Hidayah, Dawn Higgins, Eibhilin Higgins, S. R. Hinton, Ana Hipólito-Reis, Hiroaki Hiraiwa, Julian A. Hiscox, Antonia Ho, Alexandre Hoctin, Isabelle Hoffmann, Oscar Hoiting, Rebecca Holt, Jan Cato Holter, Peter Horby, Juan Pablo Horcajada, Koji Hoshino, Kota Hoshino, Catherine L. Hough, Jimmy Ming-Yang Hsu, Jean‐Sébastien Hulot, Samreen Ijaz, Hajnal-Gabriela Illes, Hugo Inácio, Carmen Infante Dominguez, Εlias Iosifidis, Lacey Irvine, Sarah Isgett, Tiago Isidoro, Margaux Isnard, Junji Itai, Daniel Ivulich, Salma Jaafoura, Julien Jabot, Clare Jackson, Nina Jamieson, Stéphane Jauréguiberry, Jeffrey Javidfar, Zabbe Jean-Benoît, Florence Jego, Synne Jenum, Ruth Jimbo, Ruth Noemí Jorge García, C. Joseph, Mark Joseph, Philippe Jouvet, Hanna Jung, Ouifiya Kafif, Florentia Kaguelidou, Sabina Kali, Smaragdi Kalomoiri, Darshana Hewa Kandamby, Chris Kandel, Ravi Kant, Christiana Kartsonaki, Daisuke Kasugai, Kevin Katz, Simreen Kaur Johal, Seán Keating, Andrea Kelly, Sadie Kelly, Lisa Kennedy, Kalynn Kennon, Younes Kerroumi, Evelyne Kestelyn, Imrana Khalid, Antoine Khalil, Coralie Khan, Irfan Ullah Khan, Michelle E. Kho, Saye Khoo, Yuri Kida, Peter Kiiza, Anders Benjamin Kildal, Antoine Kimmoun, Detlef Kindgen‐Milles, Nobuya Kitamura, Paul Klenerman, Gry Kloumann Bekken, Stephen R Knight, Robin Kobbe, Malte Kohns Vasconcelos, Volkan Korten, Caroline Kosgei, Karolina Krawczyk, Pavan Kumar Vecham, Deepali Kumar, Ethan Kurtzman, Demetrios J Kutsogiannis, Konstantinos G Kyriakoulis, Erwan L’Her, Marie Lachâtre, Marie Lacoste, John G. Laffey, Marie Lagrange, Fabrice Lainé, Marc Lambert, François Lamontagne, Marie Langelot-Richard, Eka Yudha Lantang, Marina Lanza, Cédric Laouenan, Samira Laribi, Delphine Larivière, Odile Launay, Yoan Lavie‐Badie, Andrew Law, Clément Le Bihan, Cyril Le Bris, Eve Le Coustumier, Georges Le Falher, Sylvie Le Gac, Quentin Le Hingrat, Marion Le Maréchal, Soizic Le Mestre, Vincent Le Moing, Hervé Le Nagard, Paul Le Turnier, Rafael León, Minh Patrick Lê, Marta Leal Santos, Ema Leal, James Lee, Su Hwan Lee, Todd A. Lee, Gary Leeming, Bénédicte Lefebvre, Laurent Lefèbvre, Benjamin Lefèvre, François Lellouche, Adrien Lemaignen, Véronique Lemée, Gretchen Lemmink, Michela Leone, Quentin Lepiller, François-Xavier Lescure, Olivier Lesens, Mathieu Lesouhaitier, Claire Lévy-Marchal, Bruno Lévy, Yves Lévy, Gianluigi Li Bassi, Janet Liang, Wei Shen Lim, Bruno Lina, Andreas Lind, Guillaume Lingas, Sylvie Lion-Daolio, Keibun Liu, Antonio Loforte, Navy Lolong, Diogo Lopes, Dalia Lopez-Colón, Paul Loubet, Jean Christophe Lucet, Carlos M. Luna, Olguța Lungu, Liem Luong, Dominique Luton, Ruth Lyons, Fredrik Müller, Karl Erik Müller, Olavi Maasikas, Sarah MacDonald, Moïse Machado, Gabrielle Macheda, Juan Macías Sánchez, Jai Madhok, Rafaël Mahieu, Sophie Mahy, Lars S. Maier, Mylène Maillet, Thomas Maitre, Maximilian Malfertheiner, Nadia Malik, Fernando Maltêz, Denis Malvy, Marina Mambert, Victoria Manda, Jose M. Mandei, Edmund Manning, Aldric Manuel, Ceila Maria Sant, Ana Malaque, Flávio Marino, Carolline Araujo, Charbel Maroun Eid, Ana Marques, Catherine Marquis, Brian Marsh, Laura Marsh, Marshall John, Celina Maria Turchi Martelli, Guillaume Martin‐Blondel, Ignacio Martín‐Loeches, Alejandro Martín-Quirós, Dori-Ann Martin, Emily T. Martin, M. Martinot, Caroline Martins Rego, Ana Martins, João Martins, Gennaro Martucci, Eva Miranda Marwali, Juan Fernado Masa Jimenez, David Maslove, Sabina Mason, Moshe Matan, Daniel Mathieu, M. Mattéi, Romans Matulevics, Laurence Maulin, Natalie Mc Evoy, Aine McCarthy, Colin McCloskey, Rachael McConnochie, Sherry McDermott, Sarah E. McDonald, Samuel McElwee, Natalie McEvoy, Allison McGeer, Niki McGuinness, Kenneth A McLean, Alistair Nichol, Edel Meaney, Cécile Mear-Passard, Maggie Mechlin, Ferruccio Mele, Kusum Menon, France Mentré, Alexander J. Mentzer, Noémie Mercier, Antoine Merckx, Blake Mergler, Laura Merson, António Mesquita, Agnès Meybeck, Alison Meynert, Vanina Meyssonnier, Amina Meziane, Medhi Mezidi, Céline Michelanglei, Vladislav Mihnovitš, Hugo Miranda Maldonado, Mary C. Mone, Asma Moin, David Molina, Elena Molinos, Agostinho Monteiro, Claudia Montes, Giorgia Montrucchio, Sarah R. Moore, Shona C. Moore, Lina Morales-Cely, Lucía Moro, Diego Rolando Morocho Tutillo, Ana Motos, Hugo Mouquet, Clara Mouton Perrot, Julien Moyet, Jimmy Mullaert, Daniel Munblit, Derek Murphy, Marlène Murris, Dimitra Melia Myrodia, Yohan Nguyen, Nadège Néant, Holger Neb, Nikita A Nekliudov, Raul Neto, Emily Neumann, Bernardo Neves, Pauline Yeung Ng, Wing Yiu Ng, Orna Ní Choileáin, Alistair Nichol, Stephanie Nonas, Marion Noret, Lisa Norman, Alessandra Notari, Mahdad Noursadeghi, Karolina Nowicka, Saad Nseir, Jose I Nunez, Elsa Nyamankolly, Max R OʼDonnell, Katie O’Hearn, Conar R. O’Neil, Giovanna Occhipinti, Tawnya Ogston, Takayuki Ogura, Tak-Hyuk Oh, Shinichiro Ohshimo, Budha Charan Singh Oinam, Ana Pinho Oliveira, João Oliveira, Piero Olliaro, David S. Y. Ong, Wilna Oosthuyzen, Peter Openshaw, Claudia Milena Orozco‐Chamorro, Andrés Orquera, Javier Osatnik, Nadia Ouamara, Rachida Ouissa, Clark Owyang, E. Oziol, Diana Póvoas, Maïder Pagadoy, Justine Pages, Mario Palacios, Massimo Palmarini, Giovanna Panarello, Prasan Kumar Panda, Mauro Panigada, Nathalie Pansu, Aurélie Papadopoulos, Briseida Parra, Jérémie Pasquier, Fabian Patauner, Luís Patrão, Christelle Paul, Mical Paul, Jorge Paulos, William A. Paxton, Jean‐François Payen, India Pearse, Giles J. Peek, Florent Peelman, Nathan Peiffer-Smadja, Vincent Peigne, Mare Pejkovska, Ithan D. Peltan, Rui Pereira, Daniel Pérez, Thomas Perpoint, Antonio Artigas, Lenka Petroušová, Ventzislava Petrov–Sanchez, Gilles Peytavin, Scott Pharand, Michaël Piagnerelli, Walter Picard, Olivier Picone, Marie Piel-Julian, Carola Pierobon, Carlos Pimentel, Lionel Piroth, Riinu Pius, Simone Piva, Laurent Plantier, Daniel Plotkin, Julien Poissy, Maria Pokorska‐Śpiewak, Sergio Poli, Georgios Pollakis, Jolanta Popielska, Douwe F. Postma, Pedro Póvoa, Jeff Powis, Sofia Prapa, Christian Prebensen, Jean‐Charles Preiser, Vincent Prestre, Nicholas Price, Anton Prinssen, Mark G Pritchard, Lúcia Proença, Oriane Puéchal, Gregory Purcell, Luisa Quesada, Else Quist‐Paulsen, Mohammed Quraishi, Indrek Rätsep, Bernhard Rössler, Christian Rabaud, Marie Rafiq, Gabrielle Ragazzo, Fernando Rainieri, Nagarajan Ramakrishnan, Kollengode Ramanathan, Blandine Rammaert, C. Rapp, Menaldi Rasmin, Cornelius Rau, Stanislas Rebaudet, Sarah Redl, Brenda Reeve, Liadain Reid, Renato Barbosa Reis, Jonathan Remppis, Martine Rémy, Hanna Renk, Liliana Resende, Anne-Sophie Resseguier, Matthieu Revest, Oleksa Rewa, Luis Felipe Reyes, David Richardson, Denise Richardson, Laurent Raskine, Jordi Riera, Ana Lúcia Rios, Asgar Rishu, P Rispal, Karine Risso, María Angélica Rivera Núñez, Nicholas Rizer, André Roberto, Stephanie Roberts, David L. Robertson, Olivier Robineau, Ferrán Roche-Campo, Paola Rodari, Simão Rodeia, Julia Rodriguez Abreu, Emmanuel Roilides, Amanda Rojek, Juliette Romaru, Roberto Roncon‐Albuquerque, Mélanie Roriz, Manuel Rosa‐Calatrava, Michael Rose, Dorothea Rosenberger, Andrea Rossanese, Bénédicte Rossignol, Patrick Rossignol, Carine Roy, B. Rozé, Clark D Russell, Steffi Ryckaert, Aleksander Rygh Holten, Xavier Sánchez Choez, Isabela Saba, Musharaf Sadat, Nadia Saïdani, Leonardo Salazar, Gabriele Sales, Stéphane Sallaberry, Hélène Salvator, Ángel Sánchez-Miralles, Olivier Sanchez, Vanessa Sancho‐Shimizu, Gyan Sandhu, Oana Săndulescu, Marlene Santos, Shirley Sarfo-Mensah, Benjamine Sarton, Eglė Savičiūtė, Parthena Savvidou, Joshua Scarsbrook, Tjard Schermer, Arnaud Scherpereel, Marion Schneider, Stephan Schroll, Michael Schwameis, James Scott-Brown, Janet T. Scott, Nicholas Sédillot, Tamara Seitz, Caroline Semaille, Malcolm G Semple, Éric Senneville, Filipa Sequeira, Tânia Sequeira, Ellen Shadowitz, Mohammad Shamsah, Pratima Sharma, Catherine Shaw, Victoria Shaw, Nisreen Shiban, Nobuaki Shime, Hiroaki Shimizu, Keiki Shimizu, Sally Shrapnel, Hoi‐Ping Shum, Nassima Si Mohammed, Louise Sigfrid, Catarina Silva, Maria João Silva, Wai Ching Sin, Vegard Skogen, Sue Smith, Benjamin Smood, Michelle Smyth, Morgane Snacken, Dominic So, Monserrat Solis, Joshua Solomon, Tom Solomon, Emily C. Somers, Agnès Sommet, Myung Jin Song, Rima Song, Tae Jin Song, Michael Sonntagbauer, Edouard Soum, Maria Sousa Uva, Marta Sousa, Vicente Cés de Souza-Dantas, Alexandra Sperry, Shiranee Sriskandan, Thomas Staudinger, Stephanie-Susanne Stecher, Ymkje Stienstra, Birgitte Stiksrud, Adrian Streinu‐Cercel, Anca Streinu‐Cercel, Samantha Strudwick, Ami Stuart, D.I. Stuart, Asfia Sultana, Charlotte Summers, Magdalena Surovcová Andrey A. Svistunov, Konstantinos Syrigos, Jaques Sztajnbok, Konstanty Szułdrzyński, François Téoulé, Shirin Tabrizi, Lysa Tagherset, Ewa Talarek, Sara Taleb, Jelmer Talsma, Le Van Tan, Hiroyuki Tanaka, Taku Tanaka, Hayato Taniguchi, Coralie Tardivon, Pierre Tattevin, M Azhari Taufik, Richard S. Tedder, João M.C. Teixeira, Marie-Capucine Tellier, Pleun Terpstra, B. Terrier, Nicolas Terzi, Hubert Tessier-Grenier, Vincent Thibault, Simon-Djamel Thiberville, Benoît Thill, A. A. Roger Thompson, Shaun Thompson, David Thomson, Emma C. Thomson, Duong Bich Thuy, Ryan S. Thwaites, Peter Timashev, Jean‐François Timsit, Bharath Kumar Tirupakuzhi Vijayaraghavan, Maria Toki, Kristian Tonby, Rosario María Torres Santos-Olmo, Antoni Torres, Margarida Torres, Théo Trioux, Huynh Trung Trieu, Cécile Tromeur, Ioannis Trontzas, Jonathan P. Troost, Tiffany Trouillon, Christelle Tual, Sarah Tubiana, Helen Tuite, Lance Turtle, Paweł Twardowski, Makoto Uchiyama, Roman Ullrich, Alberto Uribe, Asad Usman, Luís Val-Flores, Stijn Van de Velde, Marcel van den Berge, M. van der Feltz, Nicky Van Der Vekens, Peter van der Voort, Sylvie van der Werf, Marlice van Dyk, Laura van Gulik, Jarne Van Hattem, Steven van Lelyveld, Carolien van Netten, Noémie Vanel, Henk Vanoverschelde, Charline Vauchy, Aurélie Veislinger, Jorge Velazco, Sara Ventura, Annelies Verbon, César Vieira, Joy Ann Villanueva, J. Pablo Sáez Villar, Pierre-Marc Villeneuve, Andrea Villoldo, Nguyễn Văn Vĩnh Châu, Benoît Visseaux, Hannah Visser, Aapeli Vuorinen, Fanny Vuotto, Chih‐Hsien Wang, Jia Wei, Katharina Weil, Sanne Wesselius, Murray Wham, Bryan Whelan, Nicole White, Aurélie Wiedemann, Keith Wille, Evert‐Jan Wils, Ioannis Xynogalas, Jacky Y. Suen, Sophie Yacoub, Masaki Yamazaki, Yazdan Yazdanpanah, Cécile Yelnik, Stephanie T. Yerkovich, Toshiki Yokoyama, Hodane Yonis, P. L. Young, Saptadi Yuliarto, Marion Zabbe, Kai Zacharowski, Maram Zahran, Maria Zambon, Alberto Zanella, Konrad Zawadka, Hiba Zayyad, Alexander Zoufaly, David Zucman
Software Mentions: 8
Published: over 5 years ago

10.1007/s00300-021-02823-6

Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)
Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: over 5 years ago

10.1186/s12957-021-02328-w

Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
Cited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-016-0208-8

Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
Cited by: 124
Author(s): Jonathan Thorsen, Asker Brejnrod, Martin Steen Mortensen, Morten Arendt Rasmussen, Jakob Stokholm, Waleed Abu Al‐Soud, Søren J. Sørensen, Hans Bisgaard, Johannes Waage
Software Mentions: 8
Published: almost 10 years ago

10.3389/fonc.2020.00835

Development and Validation of a 12-Gene Immune Relevant Prognostic Signature for Lung Adenocarcinoma Through Machine Learning Strategies
Cited by: 14
Author(s): Xue Li, Guoshu Bi, Cheng Zhan, Yi Zhang, Yunfeng Yuan, Hong Fan
Software Mentions: 8
Published: over 6 years ago

10.1098/rspb.2017.0905

The evolution of dual meat and milk cattle husbandry in Linearbandkeramik societies
Cited by: 43
Author(s): Rosalind Gillis, Lenka Kovačíková, Stéphanie Bréhard, Émilie Guthmann, Ivana Vostrovská, Hana Nohálová, Rose‐Marie Arbogast, László Domboróczki, Joachim Pechtl, Alexander Anders, Arkadiusz Marciniak, Anne Tresset, Jean‐Denis Vigne
Software Mentions: 8
Published: about 9 years ago

10.1038/s41396-021-00902-4

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs
Cited by: 51
Author(s): Justin Maire, Sam K. Girvan, Sophie E. Barkla, Alexis Perez‐Gonzalez, David J. Suggett, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers13071734

Role for the Histone Demethylase KDM4B in Rhabdomyosarcoma via CDK6 and CCNA2: Compensation by KDM4A and Apoptotic Response of Targeting Both KDM4B and KDM4A
Cited by: 5
Author(s): Zoë S. Walters, Ewa Aładowicz, Bárbara Villarejo-Balcells, Gary Nugent, Joanna Selfe, Paul D. Eve, Julian Blagg, Olivia W. Rossanese, Janet Shipley
Software Mentions: 8
Published: over 5 years ago

10.3389/fmolb.2021.655126

Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-018-0279-6

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Cited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: about 8 years ago

10.1038/s41396-020-0622-6

Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Cited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: over 6 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: over 5 years ago

10.1098/rspb.2020.1158

Parasite infection disrupts escape behaviours in fish shoals
Cited by: 3
Author(s): Nicolle Demandt, Marit Praetz, Ralf H. J. M. Kurvers, Jens Krause, Joachim Kurtz, Jörn P. Scharsack
Software Mentions: 8
Published: almost 6 years ago

10.1001/jamanetworkopen.2021.15985

Assessment of Effectiveness of 1 Dose of BNT162b2 Vaccine for SARS-CoV-2 Infection 13 to 24 Days After Immunization
Cited by: 92
Author(s): Gabriel Chodick, Lilac Tene, Tal Patalon, Sivan Gazit, Amir Ben‐Tov, Dani Cohen, Khitam Muhsen
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2020.01780

Response of Soil Bacterial Community Diversity and Composition to Time, Fertilization, and Plant Species in a Sub-Boreal Climate
Cited by: 5
Author(s): Honghong Li, Petri Penttinen, Anu Mikkonen, Frederick L. Stoddard, Kristina Lindström
Software Mentions: 8
Published: about 6 years ago

10.1093/eurheartj/ehaa756

Midlife blood pressure is associated with the severity of white matter hyperintensities: analysis of the UK Biobank cohort study
Cited by: 56
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.64513

Chondrocytes in the resting zone of the growth plate are maintained in a Wnt-inhibitory environment
Cited by: 25
Author(s): Shawn A Hallett, Yuki Matsushita, Wanida Ono, Naoko Sakagami, Koji Mizuhashi, Nicha Tokavanich, Mizuki Nagata, Annabelle Zhou, Takao Hanabusa, Henry M. Kronenberg, Noriaki Ono
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-94853-7

Unique chemical parameters and microbial activity lead to increased archaeological preservation at the Roman frontier site of Vindolanda, UK
Cited by: 3
Author(s): Caroline Orr, Rhys Williams, Hrafnhildur Halldórsdóttir, Andrew Birley, Elizabeth M. Greene, Andrew Nelson, T. Komang Ralebitso-Senior, Gillian Taylor
Software Mentions: 8
Published: about 5 years ago

10.1038/s41431-020-0699-4

Differences in local population history at the finest level: the case of the Estonian population
Cited by: 22
Author(s): Vasili Pankratov, Francesco Montinaro, Alena Kushniarevich, Georgi Hudjashov, Flora Jay, Lauri Saag, Rodrigo Flores, Davide Marnetto, Marten Seppel, Mart Kals, Urmo Võsa, Cristian Taccioli, Märt Möls, Lili Milani, Anto Aasa, Daniel J. Lawson, Tõnu Esko, Reedik Mägi, Luca Pagani, Andres Metspalu, Mait Metspalu
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-021-92913-6

Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in mice
Cited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants
Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.01153-20

Bacterial Communities in Concrete Reflect Its Composite Nature and Change with Weathering
Cited by: 8
Author(s): E. Anders Kiledal, Jessica L. Keffer, Julia A. Maresca
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0217804

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Cited by: 12
Author(s): Kirsten Grond, Julie Perreau, Wesley T. Loo, A. James Spring, Colleen M. Cavanaugh, Sarah M. Hird
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-020-69828-9

Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae)
Cited by: 0
Author(s): Jonas Frankel-Bricker
Software Mentions: 8
Published: about 6 years ago

10.1101/2020.12.03.20242032

Cortical Mechanisms of Visual Hypersensitivity in Women at Risk for Chronic Pelvic Pain
Cited by: 0
Author(s): Matthew J. Kmiecik, Frank F. Tu, Rebecca L. Silton, Katlyn E Dillane, Genevieve E. Roth, Steven E. Harte, Kevin M. Hellman
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41418-021-00817-9

Prolonged SARS-CoV-2 RNA virus shedding and lymphopenia are hallmarks of COVID-19 in cancer patients with poor prognosis
Cited by: 27
Author(s): Anne-Gaëlle Goubet, Agathe Dubuisson, Arthur Géraud, F-X. Danlos, Safae Terrisse, Carolina Alves Costa Silva, Damien Drubay, Lea Touri, Marion Picard, Marine Mazzenga, Aymeric Silvin, Garett Dunsmore, Yacine Haddad, Eugénie Pizzato, Pierre Ly, Caroline Flament, Cléa Melenotte, Éric Solary, Michaëla Fontenay, Gabriel Garcia, Corinne Balleyguier, Nathalie Lassau, Markus Maeurer, Claudia Grajeda‐Iglesias, Nitharsshini Nirmalathasan, Fanny Aprahamian, Sylvère Durand, Oliver Kepp, Gladys Ferrere, Cassandra Thelemaque, Imran Lahmar, Jean Eudes Fahrner, Lydia Meziani, Abdelhakim Ahmed–Belkacem, Nadia Saïdani, Bernard La Scola, Didier Raoult, Stéphanie Gentile, Sébastien Cortaredona, Giuseppe Ippolito, Benjamin Lelouvier, Alain Roulet, Fabrice André, Fabrice Barlési, Jean Charles Soria, Caroline Pradon, Emmanuelle Gallois, Fanny Pommeret, Emeline Colomba, Florent Ginhoux, Suzanne Kazandjian, Arielle Elkrief, Bertrand Routy, Makoto Miyara, Guy Gorochov, Éric Deutsch, Laurence Albigès, Annabelle Stoclin, Bertrand Gachot, Anne Florin, Mansouria Merad, Florian Scotté, Souad Assaad, Guido Kroemer, Jean Yves Blay, Aurélien Marabelle, Frank Griscelli, Laurence Zitvogel, Lisa Derosa
Software Mentions: 8
Published: over 5 years ago

10.1038/s41418-021-00866-0

Fatal cytokine release syndrome by an aberrant FLIP/STAT3 axis
Cited by: 14
Author(s): Chiara Musiu, Simone Caligola, Alessandra Fiore, Alessia Lamolinara, Cristina Frusteri, Francesco Domenico Del Pizzo, Francesco De Sanctis, Stefania Canè, Annalisa Adamo, Francesca Hofer, Roza Maria Barouni, Andrea Grilli, Serena Zilio, Paolo Serafini, Evelina Tacconelli, Katia Donadello, Leonardo Gottin, Enrico Polati, Domenico Girelli, Ildo Polidoro, Piera Amelia Iezzi, Domenico Angelucci, Andrea Capece, Ying Chen, Shi Z, Peter J. Murray, Marco Chilosi, Ido Amit, Silvio Bicciato, Manuela Iezzi, Vincenzo Bronte, Stefano Ugel
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-92658-2

Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP
Cited by: 10
Author(s): Abhijeet Singh, Bettina Müller, Anna Schnürer
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2018.00570

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: over 8 years ago

10.1038/s41598-021-91559-8

Uridine and pyruvate protect T cells’ proliferative capacity from mitochondrial toxic antibiotics: a clinical pilot study
Cited by: 8
Author(s): Stefano Battaglia, Stefania De Santis, Monica Rutigliano, Fabio Sallustio, Angela Picerno, Maria Antonia Frassanito, Ingo Schaefer, Angelo Vacca, Antonio Moschetta, Peter Seibel, Michele Battaglia, Gaetano Villani
Software Mentions: 8
Published: over 5 years ago

10.3389/fcell.2021.710207

Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular Carcinoma
Cited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0197370

Immunity levels to poliovirus in Lao children and adults before the vaccine-derived poliovirus outbreak: A retrospective study
Cited by: 2
Author(s): Maude Pauly, Antony P. Black, Phonepaseuth Khampanisong, Phonethipsavanh Nouanthong, Judith M. Hübschen, Naphavanh Nanthavong, Kong Sayasinh, Prapan Jutavijittum, Bounthome Samountry, Anonh Xeuatvongsa, Sabine Diedrich, Claude P. Muller
Software Mentions: 8
Published: over 8 years ago

10.3390/v11060492

Culex torrentium: A Potent Vector for the Transmission of West Nile Virus in Central Europe
Cited by: 33
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Mayke Leggewie, Michelle Helms, Marlis Badusche, Giada Rossini, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 8
Published: over 7 years ago

10.1007/s10661-016-5710-8

Is the macrophyte diversification along the trophic gradient distinct enough for river monitoring?
Cited by: 14
Author(s): Krzysztof Szoszkiewicz, Anna Budka, Karol Pietruczuk, Dariusz Kayzer, Daniel Gebler
Software Mentions: 8
Published: almost 10 years ago

10.1371/journal.pone.0185528

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Cited by: 38
Author(s): Alexander D. Becker, Bryan T. Grenfell
Software Mentions: 8
Published: about 9 years ago

10.3758/s13428-019-01236-y

formr: A study framework allowing for automated feedback generation and complex longitudinal experience-sampling studies using R
Cited by: 120
Author(s): Rana Arslan, Matthias P. Walther, Cyril Tata
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-021-91118-1

The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structure
Cited by: 3
Author(s): Matthew Grisnik, Joshua B. Grinath, Donald M. Walker
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-020-74139-0

Statistical models for identifying frequent hitters in high throughput screening
Cited by: 4
Author(s): Samuel Goodwin, Golnaz Shahtahmassebi, Quentin S. Hanley
Software Mentions: 8
Published: about 6 years ago

10.3389/fmicb.2020.626713

Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range
Cited by: 6
Author(s): Janneke Schreuder, Francisca C. Velkers, Alex Bossers, Ruth Bouwstra, W.F. de Boer, Pim van Hooft, J.A. Stegeman, Stephanie D. Jurburg
Software Mentions: 8
Published: over 5 years ago

10.3390/genes12030444

Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping Pathogenicity
Cited by: 9
Author(s): Amanda T S Albanaz, Evgeny S. Gerasimov, Jeffrey Jon Shaw, Jovana Sádlová, Julius Lukeš, Petr Volf, Frederik Opperdoes, Alexei Y. Kostygov, Anzhelika Butenko, Vyacheslav Yurchenko
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-021-01078-x

An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
Cited by: 85
Author(s): Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiu-Tian Yan, Limei Lin, Qian Jiang, Lei Zhang, Chang Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B. Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Software Mentions: 8
Published: over 5 years ago

10.7554/eLife.65508

Seroconversion stages COVID19 into distinct pathophysiological states
Cited by: 36
Author(s): Matthew D. Galbraith, Kohl T Kinning, Kelly D. Sullivan, Ryan M. Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P Smith, Ross E Granrath, Jessica Shaw, Monika Dzieciątkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. Hansen, Tellen D Benett, Elena W.Y. Hsieh, Joaquín M. Espinosa
Software Mentions: 8
Published: over 5 years ago

10.1186/s41512-021-00103-9

The development and validation of prognostic models for overall survival in the presence of missing data in the training dataset: a strategy with a detailed example
Cited by: 1
Author(s): Kara-Louise Royle, David A. Cairns
Software Mentions: 8
Published: about 5 years ago

10.1136/bmjopen-2020-040132

Prediction of perinatal death using machine learning models: a birth registry-based cohort study in northern Tanzania
Cited by: 27
Author(s): Innocent B. Mboya, Michael Johnson Mahande, Mohanad Mohammed, Joseph Obure, Henry Mwambi
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-020-71211-7

Larval pesticide exposure impacts monarch butterfly performance
Cited by: 19
Author(s): Paola Olaya‐Arenas, Kayleigh C Hauri, Michael E. Scharf, Ian Kaplan
Software Mentions: 8
Published: about 6 years ago

10.1038/s41421-021-00279-w

Targeting novel LSD1-dependent ACE2 demethylation domains inhibits SARS-CoV-2 replication
Cited by: 7
Author(s): Wen Juan Tu, Robert McCuaig, Michelle Melino, Daniel J. Rawle, Thuy T. Le, Kexin Yan, Andreas Suhrbier, Rebecca L. Johnston, Lambros T. Koufariotis, Nicola Waddell, E.M. Cross, S. Tsimbalyuk, Amanda L. Bain, Elizabeth Ahern, Natasha Collinson, Simon Phipps, Jade K. Forwood, Nabila Seddiki, Sudha Rao
Software Mentions: 8
Published: over 5 years ago

10.3390/genes10110937

NF-YA Overexpression in Lung Cancer: LUSC
Cited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: almost 7 years ago

10.3390/genes11010066

Genome Resolved Biogeography of Mamiellales
Cited by: 19
Author(s): Jade Leconte, L. Felipe Benites, Thomas Vannier, Patrick Wincker, Gwenaël Piganeau, Olivier Jaillon
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0235451

Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals
Cited by: 14
Author(s): Georgia Kate Moloney, Jonathan Tuke, Eleonora Dal Grande, Torben Nielsen, Anne‐Lise Chaber
Software Mentions: 8
Published: over 5 years ago

10.1186/s12967-021-02744-2

Combined lymphocyte/monocyte count, D-dimer and iron status predict COVID-19 course and outcome in a long-term care facility
Cited by: 20
Author(s): Flavia Biamonte, Cirino Botta, Maria Mazzitelli, Salvatore Rotundo, Enrico Maria Trecarichi, Daniela Foti, Carlo Torti, Giuseppe Viglietto, Daniele Torella, Francesco Costanzo
Software Mentions: 8
Published: over 5 years ago

10.1038/s41419-021-03525-x

Loss of retinoic acid receptor-related receptor alpha (Rorα) promotes the progression of UV-induced cSCC
Cited by: 6
Author(s): Guolong Zhang, Guorong Yan, Fu Zhuo, Yuhao Wu, Fei Wu, Zhe Zheng, Shiji Fang, Ying Gao, Xiao Bao, Yeqiang Liu, Xiuli Wang, Sibo Zhu
Software Mentions: 8
Published: over 5 years ago

10.3389/fphys.2021.660906

Genome-Wide DNA Methylation Changes Associated With High-Altitude Acclimatization During an Everest Base Camp Trek
Cited by: 6
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Trevor A. Day, Tom D. Brutsaert, Abigail W. Bigham
Software Mentions: 8
Published: over 5 years ago

10.1016/j.csbj.2021.05.024

Machine learning applied to serum and cerebrospinal fluid metabolomes revealed altered arginine metabolism in neonatal sepsis with meningoencephalitis
Cited by: 12
Author(s): Peng Zhang, Zhangxing Wang, Huixian Qiu, Wenhao Zhou, Mingbang Wang, Guoqiang Cheng
Software Mentions: 8
Published: almost 6 years ago

10.1007/s00787-020-01535-2

Visual search in ADHD, ASD and ASD + ADHD: overlapping or dissociating disorders?
Cited by: 13
Author(s): Divya Seernani, K. Damania, Chara Ioannou, N. Penkalla, Holger Hill, Tom Foulsham, Alan Kingstone, Nicola Anderson, Giuseppe Boccignone, Stephan Bender, N. Smyrnis, Monica Biscaldi, Ulrich W. Ebner‐Priemer, Christoph Klein
Software Mentions: 8
Published: over 6 years ago

10.1016/j.immuni.2019.02.006

Anti-commensal IgG Drives Intestinal Inflammation and Type 17 Immunity in Ulcerative Colitis
Cited by: 121
Author(s): Tomas Castro‐Dopico, Thomas W. Dennison, John R. Ferdinand, Rebeccah J. Mathews, Aaron Fleming, Dean Clift, Benjamin J Stewart, Chenzhi Jing, Konstantina Strongili, Larisa I. Labzin, Edward J M Monk, Kourosh Saeb‐Parsy, Clare E. Bryant, Simon Clare, Miles Parkes, Menna R. Clatworthy
Software Mentions: 8
Published: over 7 years ago

10.1186/s13072-019-0305-6

CGGBP1 regulates CTCF occupancy at repeats
Cited by: 12
Author(s): Divyesh Patel, Manthan Patel, Subhamoy Datta, Uma Singh
Software Mentions: 8
Published: about 7 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2021.627437

A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems
Cited by: 4
Author(s): Gilda Varliero, Alexandre M. Anesio, Gary Barker
Software Mentions: 8
Published: about 5 years ago

10.3390/plants9010081

Leaf Gas Exchange Performance of Ten Quinoa Genotypes under a Simulated Heat Wave
Cited by: 15
Author(s): Ashley Eustis, Kevin M. Murphy, Felipe H. Barrios-Masias
Software Mentions: 8
Published: almost 7 years ago

10.3389/fmicb.2019.02761

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: almost 7 years ago

10.1128/JVI.00388-16

The Foot-and-Mouth Disease Carrier State Divergence in Cattle
Cited by: 85
Author(s): Carolina Stenfeldt, Michael Eschbaumer, Steven I. Rekant, Juan M. Pacheco, George R. Smoliga, E. E. Hartwig, Luis L. Rodrı́guez, Jonathan Arzt
Software Mentions: 8
Published: over 10 years ago

10.1128/Spectrum.00536-21

Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse Model
Cited by: 16
Author(s): Brittany Seibert, C. Joaquín Cáceres, Stivalis Cárdenas-García, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajão, Elizabeth A. Ottesen, Daniel R. Pérez
Software Mentions: 8
Published: about 5 years ago

10.1186/s40168-019-0626-5

Choice of assembly software has a critical impact on virome characterisation
Cited by: 94
Author(s): Thomas D.S. Sutton, Adam G. Clooney, Feargal J. Ryan, R. Paul Ross, Colin Hill
Software Mentions: 8
Published: over 7 years ago

10.1161/HYPERTENSIONAHA.121.17403

Blood Pressure Determinants of Cerebral White Matter Hyperintensities and Microstructural Injury: UK Biobank Cohort Study
Cited by: 13
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-94732-1

A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Cited by: 22
Author(s): Tanya Grancharova, Kaytlyn A. Gerbin, Alexander Rosenberg, Charles M. Roco, Joy Arakaki, Colette M DeLizo, Stephanie Q. Dinh, Rory Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane
Software Mentions: 8
Published: about 5 years ago

10.1093/dnares/dsaa017

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: about 6 years ago

10.3389/fphar.2021.608778

Unraveling Gene Fusions for Drug Repositioning in High-Risk Neuroblastoma
Cited by: 0
Author(s): Zhichao Liu, Xi Chen, Ruth Roberts, Ruili Huang, Mike Mikailov, Weida Tong
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-39638-9

Gut microbiota of the European Brown Hare (Lepus europaeus)
Cited by: 14
Author(s): Gabrielle Stalder, Beate Pinior, Benjamin Zwirzitz, Igor Loncaric, Dennis Jakupović, Sebastian Vetter, Steve Smith, Annika Posautz, Franz Hoelzl, Martin Wagner, Daniel Hoffmann, Anna Kübber‐Heiss, Evelyne Mann
Software Mentions: 8
Published: over 7 years ago

10.3389/fmicb.2019.02492

Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?
Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-018-36696-3

Immune cell characteristics and cytokine responses in adult HIV-negative tuberculous meningitis: an observational cohort study
Cited by: 23
Author(s): Arjan van Laarhoven, Sofiati Dian, Suzanne van Dorp, Feby Purnama, Valerie A C M Koeken, Emira Diandini, Fitria Utami, Resvi Livia, Lika Apriani, Edwin Ardiansyah, Rob ter Horst, Mihai G. Netea, Tri Hanggono Achmad, Philip C. Hill, Rovina Ruslami, Bachti Alisjahbana, James E. Ussher, Agnes Rengga Indrati, Ayesha Verrall, Ahmad Rizal Ganiem, Reinout van Crevel
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-018-34019-0

Microbial structure and function in infant and juvenile rhesus macaques are primarily affected by age, not vaccination status
Cited by: 4
Author(s): Yu Hasegawa, Britni Curtis, Vernon Yutuc, Megan Rulien, Kelly Morrisroe, Kristin Watkins, Clayton Ferrier, Chris English, Laura Hewitson, Carolyn M. Slupsky
Software Mentions: 8
Published: almost 8 years ago

10.1186/s40168-019-0630-9

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems
Cited by: 103
Author(s): Shuo Jiao, Ye Xu, Jie Zhang, Yahai Lu
Software Mentions: 8
Published: over 7 years ago

10.1093/plankt/fbz063

Environmental variables driving species and genus level changes in annual plankton biomass
Cited by: 5
Author(s): Louise Forsblom, Jonna Engström‐Öst, Sirpa Lehtinen, Inga Lips, Andreas Lindén
Software Mentions: 8
Published: almost 7 years ago

10.18632/oncotarget.26668

mTOR inhibition affects Yap1-β-catenin-induced hepatoblastoma growth and development
Cited by: 11
Author(s): Laura Molina, Hong Yang, Adeola O. Adebayo Michael, Michael Oertel, Aaron Bell, Sucha Singh, Xin Chen, Junyan Tao, Satdarshan P. Monga
Software Mentions: 8
Published: over 7 years ago

10.3390/plants10081536

Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response
Cited by: 2
Author(s): Yaya Cui, Dongqin Chen, Yuyong Jiang, Dong Xu, Peter Balint‐Kurti, Gary Stacey
Software Mentions: 8
Published: about 5 years ago

10.1093/plankt/fbab017

Container volume may affect growth rates of ciliates and clearance rates of their microcrustacean predators in microcosm experiments
Cited by: 4
Author(s): Thomas Weisse, Dunja Lukić, Xiaoteng Lu
Software Mentions: 8
Published: over 5 years ago

10.7554/eLife.65228

Egr2 induction in spiny projection neurons of the ventrolateral striatum contributes to cocaine place preference in mice
Cited by: 8
Author(s): Diptendu Mukherjee, Ben J. Gonzales, Reut Ashwal-Fluss, Hagit Turm, Maya Groysman, Ami Citri
Software Mentions: 8
Published: over 5 years ago

10.1186/s12866-021-02222-1

Patterns of yeast diversity distribution and its drivers in rhizosphere soil of Hami melon orchards in different regions of Xinjiang
Cited by: 7
Author(s): Shanshan Zhu, Yonghui Lei, Chong Wang, Yu‐Mei Wei, Chuncheng Wang, Yanfei Sun
Software Mentions: 8
Published: over 5 years ago

10.7554/eLife.69937

CLAMP and Zelda function together to promote Drosophila zygotic genome activation
Cited by: 33
Author(s): Jianan Duan, Leila E. Rieder, Megan M Colonnetta, Annie Huang, Mary Mckenney, Scott Watters, Girish Deshpande, William T. Jordan, Nicolas L. Fawzi, Erica Larschan
Software Mentions: 8
Published: about 5 years ago

10.1186/s12859-021-04123-6

The prognostic value of an autophagy-related lncRNA signature in hepatocellular carcinoma
Cited by: 19
Author(s): Shiming Yang, Yaping Zhou, Xiangxin Zhang, Lu Wang, Jianfeng Fu, Xiaotong Zhao, Yang Liu
Software Mentions: 8
Published: over 5 years ago

10.18632/aging.202486

Constructing a ceRNA-immunoregulatory network associated with the development and prognosis of human atherosclerosis through weighted gene co-expression network analysis
Cited by: 11
Author(s): Yaozhong Liu, Na Liu, Qiming Liu
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pmed.1003413

Body mass index and risk of dying from a bloodstream infection: A Mendelian randomization study
Cited by: 14
Author(s): Tormod Rogne, Erik Solligård, Stephen Burgess, Ben Brumpton, Julie Paulsen, Hallie C. Prescott, Randi Marie Mohus, Lise Tuset Gustad, Arne Mehl, Bjørn Olav Åsvold, Andrew T. DeWan, Jan Kristian Damås
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0247836

Integrated analysis of RNA-binding proteins in thyroid cancer
Cited by: 4
Author(s): Zhen Jing, Zhe Song, Wenjie Su, Qun Zeng, Jiacen Li, Qi Sun
Software Mentions: 8
Published: over 5 years ago

10.1186/s13148-021-01144-z

Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes
Cited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: about 5 years ago

10.3389/fpls.2021.616975

Heterotic Patterns of Temperate and Tropical Maize by Ear Photometry
Cited by: 1
Author(s): Seth Tolley, Amritpal Singh, Mitchell R. Tuinstra
Software Mentions: 8
Published: over 5 years ago

10.1186/s13148-020-00996-1

Integrated analysis reveals the alterations that LMNA interacts with euchromatin in LMNA mutation-associated dilated cardiomyopathy
Cited by: 9
Author(s): Xiaolin Zhang, Xiuli Shao, Ruijia Zhang, Rongli Zhu, Rui Feng
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.60122

Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset
Cited by: 68
Author(s): Benny Borremans, Amandine Gamble, Katherine C. Prager, Sarah K Helman, Abby M. McClain, Caitlin Cox, Van Savage, James O. Lloyd‐Smith
Software Mentions: 8
Published: about 6 years ago

10.1186/s12870-019-2182-3

A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference
Cited by: 9
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, León A. Bravo
Software Mentions: 8
Published: over 6 years ago

10.1186/s13148-016-0230-5

Peripheral blood methylation profiling of female Crohn’s disease patients
Cited by: 40
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Jing Hua Zhao, Wouter J. de Jonge, Geert R. D’Haens, Marcel M.A.M. Mannens, Adri N. Mul, Anje A. te Velde, Peter Henneman
Software Mentions: 8
Published: over 10 years ago

10.1186/s13148-020-00899-1

Highly accurate skin-specific methylome analysis algorithm as a platform to screen and validate therapeutics for healthy aging
Cited by: 23
Author(s): Mariana Boroni, Alessandra Zonari, Carolina Reis de Oliveira, Kallie Al-Katib, Edgar Andrés Ochoa Cruz, Lear E. Brace, Juliana Lott Carvalho
Software Mentions: 8
Published: over 6 years ago

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