Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: NbClust

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/NbClust

Determining the Best Number of Clusters in a Data Set
11 versions
Latest release: over 2 years ago
14 dependent packages
12,733 downloads last month

Papers Mentioning NbClust 181

10.1038/s41598-020-74015-x
Rural–urban scaling of age, mortality, crime and property reveals a loss of expected self-similar behaviour
Cited by: 7
Author(s): Jack Sutton, Golnaz Shahtahmassebi, Haroldo V. Ribeiro, Quentin S. Hanley
Software Mentions: 24
Published: about 4 years ago
10.3389/fonc.2021.690129
A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric Cancer
Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Software Mentions: 16
Published: over 3 years ago
10.1038/s41598-021-88209-4
Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data
Cited by: 6
Author(s): François Fauteux, Anuradha Surendra, Scott McComb, Youlian Pan, Jonathan D. Hill
Software Mentions: 15
Published: over 3 years ago
10.1371/journal.ppat.1008653
Genome-wide transcriptomics identifies an early preclinical signature of prion infection
Cited by: 39
Author(s): Silvia Sorce, Mario Nuvolone, Giancarlo Russo, Andra Chincisan, Daniel Heinzer, Merve Avar, Manuela Pfammatter, Petra Schwarz, Mirzet Delic, Mattia Müller, Simone Hornemann, Despina Sanoudou, Claudia Scheckel, Adriano Aguzzi
Software Mentions: 14
Published: over 4 years ago
10.1371/journal.pbio.3000581
PlotTwist: A web app for plotting and annotating continuous data
Cited by: 43
Author(s): Joachim Goedhart
Software Mentions: 14
Published: almost 5 years ago
10.3390/s21134377
Multivariate Time Series Analysis of Temperatures in the Archaeological Museum of L’Almoina (Valencia, Spain)
Cited by: 4
Author(s): Sandra Ramírez, Manuel Zarzo, Fernando-Juan García-Diego
Software Mentions: 12
Published: over 3 years ago
10.3389/fmed.2021.644724
Exploring the Clinical Characteristics of COVID-19 Clusters Identified Using Factor Analysis of Mixed Data-Based Cluster Analysis
Cited by: 10
Author(s): Han Liang, Pan Shen, Jiahui Yan, Yao Huang, Xin Ba, Wei Chen Lin, Hui Wang, Ying Huang, Kai Qin, Yu Wei, Zhe Chen, Shenghao Tu
Software Mentions: 12
Published: over 3 years ago
10.1155/2021/6664386
Hypoxia Molecular Characterization in Hepatocellular Carcinoma Identifies One Risk Signature and Two Nomograms for Clinical Management
Cited by: 23
Author(s): Xinwei Han, Long Liu, Taoyuan Lu, Libo Wang, Zhaonan Li, Dechao Jiao, Xinwei Han
Software Mentions: 11
Published: almost 4 years ago
10.1371/journal.pone.0188873
A comprehensive analysis of breast cancer microbiota and host gene expression
Cited by: 105
Author(s): Kevin J. Thompson, James N. Ingle, Xiaojia Tang, Nicholas Chia, Patricio Jeraldo, Marina Walther-Antonio, Karunya K. Kandimalla, Stephen Johnson, Jingwen Yao, Sean C. Harrington, Vera J. Suman, Liewei Wang, Richard Weinshilboum, Judy C. Boughey, Jean Pierre A. Kocher, Heidi Nelson, Matthew P. Goetz, Krishna R. Kalari
Software Mentions: 11
Published: almost 7 years ago
10.3390/genes12040503
Genomic and Phenotypic Diversity of Cultivated and Wild Tomatoes with Varying Levels of Heat Tolerance
Cited by: 10
Author(s): Mathieu Anatole Tele Ayenan, Agyemang Danquah, Paterne A. Agre, Peter Hanson, Isaac Asante, Eric Danquah
Software Mentions: 10
Published: over 3 years ago
10.3389/fonc.2021.619242
The Identification and Validation of Two Heterogenous Subtypes and a Risk Signature Based on Ferroptosis in Hepatocellular Carcinoma
Cited by: 40
Author(s): Xinwei Han, Libo Wang, Long Liu, Taoyuan Lu, Dechao Jiao, Yuling Sun, Xinwei Han
Software Mentions: 9
Published: over 3 years ago
10.2196/24887
Clustering of Unhealthy Behaviors: Protocol for a Multiple Behavior Analysis of Data From the Canadian Longitudinal Study on Aging
Cited by: 2
Author(s): Zack van Allen, Simon L. Bacon, Paquito Bernard, Heather Brown, Sophie Desroches, Monika Kastner, Kim Lavoie, Marta M. Marques, Nicola McCleary, Sharon E. Straus, Taljaard Monica, Kednapa Thavorn, Jennifer R Tomasone, Justin Presseau
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0249858
Morpho-agronomic, biochemical and molecular analysis of genetic diversity in the Mesoamerican common bean panel
Cited by: 5
Author(s): Alexandre Simões Nogueira, Vânia Moda-Cirino, Jéssica Delfini, Luriam Aparecida Brandão, Silas Mian, Leonel Vinícius Constantino, Douglas Mariani Zeffa, José dos Santos Neto, Leandro Simões Azeredo Gonçalves
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2021.616133
Analysis of Autophagy-Related Signatures Identified Two Distinct Subtypes for Evaluating the Tumor Immune Microenvironment and Predicting Prognosis in Ovarian Cancer
Cited by: 11
Author(s): Xingyu Chen, Hua Lan, Dong He, Zhanwang Wang, Runshi Xu, Jing Yuan, Mengqing Xiao, Yao Zhang, Lian Gong, Songshu Xiao, Ke Cao
Software Mentions: 8
Published: over 3 years ago
10.1002/ece3.4535
Determining social and population structures requires multiple approaches: A case study of the desert ant<i>Cataglyphis israelensis</i>
Cited by: 3
Author(s): Tali Reiner Brodetzki, Abraham Hefetz
Software Mentions: 8
Published: almost 6 years ago
10.1186/s12859-017-1998-9
Thresher: determining the number of clusters while removing outliers
Cited by: 36
Author(s): Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes
Software Mentions: 8
Published: almost 7 years ago
10.7717/peerj.11983
Identifying transcript 5′ capped ends in <i>Plasmodium falciparum</i>
Cited by: 2
Author(s): Philip Shaw, Jittima Piriyapongsa, Pavita Kaewprommal, Chayaphat Wongsombat, Chadapohn Chaosrikul, Krirkwit Teeravajanadet, Manon Boonbangyang, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Sissades Tongsima
Software Mentions: 8
Published: about 3 years ago
10.1371/journal.pone.0246491
Trophic structure of a nektobenthic community exploited by a multispecific bottom trawling fishery in Northeastern Brazil
Cited by: 3
Author(s): Alex Souza Lira, Flávia Lucena‐Frédou, Frédéric Ménard, Thierry Frédou, Júlio Guazzelli Gonzalez, Valdimere Ferreira, José Souto Rosa Filho, Jean-Marie Munaron, François Le Loc’h
Software Mentions: 8
Published: almost 4 years ago
10.3389/fpsyg.2018.01748
The Semantic Content of Abstract Concepts: A Property Listing Study of 296 Abstract Words
Cited by: 57
Author(s): Marcel Harpaintner, Natalie M. Trumpp, Markus Kiefer
Software Mentions: 7
Published: about 6 years ago
10.3390/nu12051288
Cluster Analysis of Physical Activity Patterns, and Relationship with Sedentary Behavior and Healthy Lifestyles in Prepubertal Children: Genobox Cohort
Cited by: 20
Author(s): Rosaura Leis, José Manuel Jurado-Castro, Francisco Jesús Llorente-Cantarero, Augusto Anguita‐Ruiz, Azahara Iris-Rupérez, Juan José Bedoya-Carpente, Rocío Vázquez-Cobela, Concepción M. Aguilera, Gloria Bueno, Mercedes Gil-Campos
Software Mentions: 7
Published: over 4 years ago
10.1186/s12967-020-02697-y
A novel immune classification reveals distinct immune escape mechanism and genomic alterations: implications for immunotherapy in hepatocellular carcinoma
Cited by: 58
Author(s): Zaoqu Liu, Yuyuan Zhang, Chengcheng Shi, Xueliang Zhou, Kaihao Xu, Dechao Jiao, Zhenqiang Sun, Xinwei Han
Software Mentions: 7
Published: almost 4 years ago
10.3390/v11121085
Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages
Cited by: 19
Author(s): Patrick A. de Jonge, F. A. Bastiaan von Meijenfeldt, Laura E van Rooijen, Stan J. J. Brouns, Bas E. Dutilh
Software Mentions: 7
Published: almost 5 years ago
10.1242/dev.199561
Global proteomic analyses of human cytotrophoblast differentiation/invasion
Cited by: 4
Author(s): Hao Chen, Katherine E. Williams, Elaine Kwan, Mirhan Kapidzic, Kenisha A. Puckett, Rayyan Aburajab, Joshua F. Robinson, Susan J. Fisher
Software Mentions: 7
Published: over 3 years ago
10.1098/rspb.2017.0401
<i>Tetranychus urticae</i> mites do not mount an induced immune response against bacteria
Cited by: 17
Author(s): Gonçalo Santos-Matos, Nicky Wybouw, Nelson Martins, Flore Zélé, Maria Riga, Alexandre B. Leitão, John Vontas, Miodrag Grbić, Thomas Van Leeuwen, Sara Magalhães, Élio Sucena
Software Mentions: 7
Published: over 7 years ago
10.7717/peerj.11105
The biosonar of the boto: evidence of differences among species of river dolphins (<i>Inia</i>spp.) from the Amazon
Cited by: 2
Author(s): Jéssica Fernandes de Melo, Thiago Orion Simões Amorim, Mariana Paschoalini, Artur Andriolo
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0219723
Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima
Cited by: 10
Author(s): Gareth A. Pearson, Neusa Martins, Pedro M Madeira, Ester Á. Serrão, Inka Bartsch
Software Mentions: 7
Published: about 5 years ago
10.7717/peerj.9209
Estimating food resource availability in arid environments with Sentinel 2 satellite imagery
Cited by: 4
Author(s): Caterina Funghi, René H. J. Heim, Wiebke Schuett, Simon C. Griffith, Jens Oldeland
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pcbi.1008769
COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
Cited by: 1
Author(s): Song He, Xinyu Song, Xisheng Yang, Jianyang Yu, Yao Wen, Lianlian Wu, Bowei Yan, Jiannan Feng, Xiaochen Bo
Software Mentions: 6
Published: over 3 years ago
10.3390/diagnostics11050887
A Comprehensive Machine Learning Framework for the Exact Prediction of the Age of Onset in Familial and Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Jorge I. Vélez, Luiggi A. Samper, Mauricio Arcos-Holzinger, Lady G. Espinosa, Mario A. Isaza-Ruget, Francisco Lopera, Mauricio Arcos‐Burgos
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-017-19059-2
Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
Cited by: 4
Author(s): Mario Lauria, Maria Persico, N. Ðorđević, Ornella Cominetti, Alice Matone, Joanne Hosking, Alison Jeffery, Jonathan Pinkney, Laeticia Da Silva, Corrado Priami, Ivan Montoliu, François‐Pierre J. Martin
Software Mentions: 6
Published: almost 7 years ago
10.3389/fonc.2021.622752
Tumor Immunometabolism Characterization in Ovarian Cancer With Prognostic and Therapeutic Implications
Cited by: 9
Author(s): Miner Yang, Gaowen Chen, Kunjie Gao, Yifeng Wang
Software Mentions: 6
Published: over 3 years ago
10.1172/JCI121087
An airway epithelial IL-17A response signature identifies a steroid-unresponsive COPD patient subgroup
Cited by: 69
Author(s): Stephanie A. Christenson, Maarten van den Berge, Alen Faiz, Kai Inkamp, Nirav R. Bhakta, Luke R. Bonser, Lorna Zlock, Igor Barjaktarević, R. Graham Barr, Eugene R. Bleecker, Richard C. Boucher, Russell P. Bowler, Alejandro P. Comellas, Jeffrey L. Curtis, Mei Lan K. Han, Nadia N. Hansel, Pieter S. Hiemstra, Robert J. Kaner, Jerry A. Krishnanm, Fernando J. Martínez, Wanda K. O’Neal, Robert Paine, Wim Timens, James M. Wells, Avrum Spira, David J. Erle, Prescott G. Woodruff
Software Mentions: 6
Published: almost 6 years ago
10.1038/s41598-019-54447-w
A genomic predictor of lifespan in vertebrates
Cited by: 43
Author(s): Benjamin Mayne, Oliver Berry, Campbell R. Davies, Jessica Farley, Simon Jarman
Software Mentions: 6
Published: almost 5 years ago
10.1186/s40478-019-0681-y
A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: over 5 years ago
10.1002/ece3.5819
Evolution of sexually dimorphic pheromone profiles coincides with increased number of male‐specific chemosensory organs in <i>Drosophila prolongata</i>
Cited by: 12
Author(s): Yige Luo, Yunwei Zhang, Jean‐Pierre Farine, Jean‐François Ferveur, Santiago R. Ramírez, Artyom Kopp
Software Mentions: 6
Published: almost 5 years ago
10.1038/s42003-021-02015-2
Imbalanced social-communicative and restricted repetitive behavior subtypes of autism spectrum disorder exhibit different neural circuitry
Cited by: 13
Author(s): Natasha Bertelsen, Isotta Landi, Richard A. I. Bethlehem, Jakob Seidlitz, Elena Maria Busuoli, Veronica Mandelli, Eleonora Satta, Stavros Trakoshis, Bonnie Auyeung, Prantik Kundu, Eva Loth, Guillaume Dumas, Sarah Baumeister, Christian F. Beckmann, Sven Bölte, Thomas Bourgeron, Tony Charman, Sarah Durston, Christine Ecker, Rosemary Holt, Mark H. Johnson, Emily J.H. Jones, Luke Mason, Andreas Meyer‐Lindenberg, Carolin Moessnang, Marianne Oldehinkel, Antonio M. Persico, Julian Tillmann, Steve Williams, Will Spooren, Declan Murphy, Jan K. Buitelaar, Simon Baron‐Cohen, Meng‐Chuan Lai, Michael Lombardo
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-019-45950-1
The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: over 5 years ago
10.1590/0037-8682-0470-2019
Evaluation of genome similarities using a wavelet-domain approach
Cited by: 2
Author(s): Leila Maria Ferreira, Thelma Sáfadi, Juliano Lino Ferreira
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.11580
Detection of genomic regions associated malformations in newborn piglets: a machine-learning approach
Cited by: 0
Author(s): Siroj Bakoev, Aleksei Traspov, Lyubov Getmantseva, А. А. Белоус, Т. В. Карпушкина, Olga Kostyunina, А. В. Усатов, Tatiana V. Tatarinova
Software Mentions: 5
Published: over 3 years ago
10.7717/peerj.8871
Data-driven classification of the certainty of scholarly assertions
Cited by: 4
Author(s): Mario Prieto, Helena F. Deus, Anita de Waard, Erik Schultes, Beatriz García-Jiménez, Mark D. Wilkinson
Software Mentions: 5
Published: over 4 years ago
10.3390/ijms21207626
Comparison of Methods for Bulk Automated Simulation of Glycosidic Bond Conformations
Cited by: 4
Author(s): Viktor S. Stroylov, Maria V. Panova, Filip V. Toukach
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0233077
Comparative transcriptomics of Diuraphis noxia and Schizaphis graminum fed wheat plants containing different aphid-resistance genes
Cited by: 2
Author(s): Lina Aguirre Rojas, Erin D. Scully, Laramy Enders, Alicia E. Timm, Deepak K. Sinha, C. Michael Smith
Software Mentions: 5
Published: over 4 years ago
10.1186/s12864-020-07225-2
Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice
Cited by: 25
Author(s): Pabodha Hettige, Uzma Tahir, Kiisa C. Nishikawa, Matthew J. Gage
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-021-98176-5
Flow cytometry method for absolute counting and single-cell phenotyping of mycobacteria
Cited by: 5
Author(s): David Barr, Charles Onyango Omollo, Mandy K. Mason, Anastasia Koch, Robert J. Wilkinson, David G. Lalloo, Graeme Meintjes, Valerie Mizrahi, Digby F. Warner, Gerry Davies
Software Mentions: 5
Published: about 3 years ago
10.1007/s43926-021-00016-5
Social media analytics of the Internet of Things
Cited by: 4
Author(s): Jim Scheibmeir, Yashwant K. Malaiya
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.6880
Structural implications of traditional agricultural landscapes on the functional diversity of birds near the Korean Demilitarized Zone
Cited by: 8
Author(s): Jae Hyun Kim, Shinyeong Park, Seung Ho Kim, Kyungsik Kang, Bruce Waldman, Myung Hwa Lee, Minhye Yu, Hyunyoung Yang, Hyun Yong Chung, Eun Ju Lee
Software Mentions: 5
Published: about 4 years ago
10.3390/ani9100733
Virulence Genes, Shiga Toxin Subtypes, Serogroups, and Clonal Relationship of Shiga Toxin-Producing Escherichia Coli Strains Isolated from Livestock and Companion Animals
Cited by: 15
Author(s): Nicolás Galarce, Beatriz Escobar, Francisco Javier Sierro Sánchez, Esteban Paredes-Osses, Raúl Alegría-Morán, César Borie
Software Mentions: 5
Published: about 5 years ago
10.3390/foods9101425
Taste Interactions between Sweetness of Sucrose and Sourness of Citric and Tartaric Acid among Chinese and Danish Consumers
Cited by: 15
Author(s): Jonas Yde Junge, Anne Sjoerup Bertelsen, Line Holler Mielby, Yan Zeng, Yaqin Sun, Derek V. Byrne, Ulla Kidmose
Software Mentions: 5
Published: about 4 years ago
10.1186/s12889-021-11441-0
Introducing an efficient sampling method for national surveys with limited sample sizes: application to a national study to determine quality and cost of healthcare
Cited by: 5
Author(s): Mahboubeh Parsaeian, Mahdi Mahdavi, Mojdeh Saadati, Parinaz Mehdipour, Ali Sheidaei, Shahab Khatibzadeh, Farshad Farzadfar, Saeid Shahraz
Software Mentions: 5
Published: over 3 years ago
10.3390/nu12041170
Quantifying Diet Intake and Its Association with Cardiometabolic Risk in the UK Airwave Health Monitoring Study: A Data-Driven Approach
Cited by: 3
Author(s): Larissa C Hunt, Hassan S. Dashti, Queenie Chan, Rachel Gibson, Céline Vetter
Software Mentions: 5
Published: over 4 years ago
10.6026/97320630013101
optCluster: An R Package for Determining the Optimal Clustering Algorithm
Cited by: 36
Author(s): Michael Sekula, Somnath Datta, Susmita Datta
Software Mentions: 5
Published: over 7 years ago
10.3389/fpls.2020.00790
Spatial Variability of Soil and Plant Water Status and Their Cascading Effects on Grapevine Physiology Are Linked to Berry and Wine Chemistry
Cited by: 27
Author(s): Runze Yu, Luca Brillante, Johann Martínez‐Lüscher, S. Kaan Kurtural
Software Mentions: 5
Published: over 4 years ago
10.3389/fpls.2020.00244
Proximal Sensing of Soil Electrical Conductivity Provides a Link to Soil-Plant Water Relationships and Supports the Identification of Plant Water Status Zones in Vineyards
Cited by: 22
Author(s): Runze Yu, S. Kaan Kurtural
Software Mentions: 5
Published: over 4 years ago
10.1186/s12913-020-05173-x
Care coordination for severe mental health disorders: an analysis of healthcare provider patient-sharing networks and their association with quality of care in a French region
Cited by: 3
Author(s): Coralie Gandré, Laurent Beauguitte, Alexandre Lolivier, Magali Coldefy
Software Mentions: 4
Published: over 4 years ago
10.1186/s12866-020-02052-7
MALDI-TOF mass spectrometry for sub-typing of Streptococcus pneumoniae
Cited by: 6
Author(s): Sivkheng Kann, Sena Sao, Chanleakhena Phoeung, Youlet By, Juliet E. Bryant, Florence Komurian-Pradel, Vonthanak Saphonn, Monidarin Chou, Paul Turner
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13321-019-0405-0
The rcdk and cluster R packages applied to drug candidate selection
Cited by: 24
Author(s): Adrian Voicu, Narcis Duţeanu, Mirela Voicu, Daliborca Vlad, Victor Dumitraşcu
Software Mentions: 4
Published: almost 5 years ago
10.1002/cam4.2192
Immune microenvironments differ in immune characteristics and outcome of glioblastoma multiforme
Cited by: 21
Author(s): Botao Zhang, Rongfang Shen, Shujun Cheng, Feng Li
Software Mentions: 4
Published: over 5 years ago
10.3390/ijerph16162913
Investigation of Relationship Between Spatial Distribution of Medical Equipment and Preventable Mortality
Cited by: 3
Author(s): Beata Gavurová, David Tuček, Viliam Kováč
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0172829
Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 7 years ago
10.1186/s40164-020-00165-3
Microenvironment characterization and multi-omics signatures related to prognosis and immunotherapy response of hepatocellular carcinoma
Cited by: 45
Author(s): Furong Liu, Lu Qin, Zhibin Liao, Jia Song, Chaoyi Yuan, Yachong Liu, Yu Wang, Heze Xu, Qiaofeng Zhang, Yigang Pei, Hongwei Zhang, Yonglong Pan, Xiaoping Chen, Zhanguo Zhang, Wanguang Zhang, Bixiang Zhang
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.62373
Emergence of non-canonical parvalbumin-containing interneurons in hippocampus of a murine model of type I lissencephaly
Cited by: 11
Author(s): Tyler Ekins, Vivek Mahadevan, Yajun Zhang, James A D'Amour, Gülcan Akgül, Timothy J. Petros, Chris J McBain
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pone.0242354
Characterization of commercial poultry farms in Mexico: Towards a better understanding of biosecurity practices and antibiotic usage patterns
Cited by: 6
Author(s): Erika Ornelas-Eusebio, Gary Garcı́a-Espinosa, Karine Laroucau, Gina Zanella
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.7067
Compartmentalized organization of ecological niche occupation in insular invertebrate communities
Cited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pntd.0008279
Fine-scale population genetic structure of dengue mosquito vector, Aedes aegypti, in Metropolitan Manila, Philippines
Cited by: 18
Author(s): Thaddeus M. Carvajal, Kohei Ogishi, Sakiko Yaegeshi, Lara Fides T. Hernandez, Katherine M. Viacrusis, Howell T. Ho, Divina Amalin, Kozo Watanabe
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-019-54575-3
Diagnostic performance of hematological discrimination indices to discriminate between βeta thalassemia trait and iron deficiency anemia and using cluster analysis: Introducing two new indices tested in Iranian population
Cited by: 19
Author(s): Mina Jahangiri, Fakher Rahim, Amal Saki Malehi
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0101239
Visualizing Molecular Profiles of Glioblastoma with GBM-BioDP
Cited by: 49
Author(s): Orieta Celiku, Seth Johnson, Shuping Zhao, Kevin Camphausen, Uma Shankavaram
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pgen.1008775
Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology
Cited by: 26
Author(s): Nikhil Milind, Christoph Preuß, Annat Haber, Guruprasad Ananda, Shubhabrata Mukherjee, John Cai, Sarah Shapley, Benjamin A. Logsdon, Paul K. Crane, Gregory W. Carter
Software Mentions: 4
Published: over 4 years ago
10.3389/fcimb.2017.00235
In vitro Increased Respiratory Activity of Selected Oral Bacteria May Explain Competitive and Collaborative Interactions in the Oral Microbiome
Cited by: 9
Author(s): Emma Hernandez-Sanabria, Vera Slomka, Esteban Rodríguez Herrero, Frederiek‐Maarten Kerckhof, Lynette Zaidel, Wim Teughels, Nico Boon
Software Mentions: 4
Published: over 7 years ago
10.1128/mBio.03234-19
RNA-Seq Analysis Illuminates the Early Stages of <i>Plasmodium</i> Liver Infection
Cited by: 24
Author(s): Maria Toro-Moreno, Kayla Sylvester, Tamanna Srivastava, Dora Posfai, Emily R. Derbyshire
Software Mentions: 4
Published: over 4 years ago
10.1523/ENEURO.0341-20.2021
The Time Varying Networks of the Interoceptive Attention and Rest
Cited by: 3
Author(s): Ana Y. Martínez, Athina Demertzi, Clemens Bauer, Zeus Gracia-Tabuenca, Sarael Alcauter, Fernando A. Barrios
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0250569
Profiles and outcomes in patients with COVID-19 admitted to wards of a French oncohematological hospital: A clustering approach
Cited by: 3
Author(s): Louise Bondeelle, Sylvie Chevret, S. Cassonnet, Stéphanie Harel, Blandine Denis, Nathalie De Castro, Anne Bergeron
Software Mentions: 3
Published: over 3 years ago
10.1186/s13059-020-02253-3
SPIN reveals genome-wide landscape of nuclear compartmentalization
Cited by: 52
Author(s): Yuchuan Wang, Yang Zhang, Ruochi Zhang, Tom van Schaik, Liguo Zhang, Takayo Sasaki, Daniel Peric-Hupkes, Yu Chen, David M. Gilbert, Bas van Steensel, Andrew S. Belmont, Jian Ma
Software Mentions: 3
Published: almost 4 years ago
10.3389/fphys.2019.01276
Anthropometric Clusters of Competitive Cyclists and Their Sprint and Endurance Performance
Cited by: 19
Author(s): Stephan van der Zwaard, C.J. de Ruiter, Richard T. Jaspers, Jos J. de Koning
Software Mentions: 3
Published: about 5 years ago
10.3389/fpsyg.2021.627118
The Contribution of Learning and Mental Health Variables in First-Year Students' Profiles
Cited by: 7
Author(s): Fotios S. Milienos, Christos Rentzios, Leen Catrysse, David Gijbels, Sofia Mastrokoukou, Claudio Longobardi, Evangelia Karagiannopoulou
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-020-73747-0
A role for the immune system in advanced laryngeal cancer
Cited by: 9
Author(s): Marta Tagliabue, Fausto Maffini, Caterina Fumagalli, Sara Gandini, Daniela Lepanto, Federica Corso, Salvatore Cacciola, Alberto Ranghiero, Alessandra Rappa, Davide Vacirca, Maria Cossu Rocca, Daniela Alterio, Elena Guerini-Rocco, Augusto Cattaneo, Francesco Chu, Stefano Zorzi, Giuseppe Curigliano, Susanna Chiocca, Massimo Barberis, Giuseppe Viale, Mohssen Ansarin
Software Mentions: 3
Published: about 4 years ago
10.1186/s12711-020-00596-w
Statistical analysis in support of maintaining a healthy traditional Siamese cat population
Cited by: 4
Author(s): Arthur M. A. Pistorius, Ineke Blokker
Software Mentions: 3
Published: almost 4 years ago
10.3390/bs10030066
Schwartz Value Clusters in Modern University Students
Cited by: 4
Author(s): О В Маслова, Dmitriy A. Shlyakhta, Mikhail S. Yanitskiy
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pntd.0009139
The influence of roads on the fine-scale population genetic structure of the dengue vector Aedes aegypti (Linnaeus)
Cited by: 10
Author(s): Maria Angenica F. Regilme, Thaddeus M. Carvajal, Ann‐Christin Honnen, Divina Amalin, Kozo Watanabe
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-020-58107-2
CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes
Cited by: 17
Author(s): Masroor Bayati, Hamid R. Rabiee, Mehrdad Mehrbod, Fatemeh Vafaee, Diako Ebrahimi, Alistair R.R. Forrest, Hamid Alinejad‐Rokny
Software Mentions: 3
Published: almost 5 years ago
10.1042/BSR20201482
Survival prediction in patients with colon adenocarcinoma via multiomics data integration using a deep learning algorithm
Cited by: 21
Author(s): Jiudi Lv, Junjie Wang, Shang XiuJuan, Fangfang Liu, Shanshan Guo
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0217166
Long-term changes in northern large-herbivore communities reveal differential rewilding rates in space and time
Cited by: 29
Author(s): James D. M. Speed, Gunnar Austrheim, Anders Lorentzen Kolstad, Erling Johan Solberg
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-018-5313-6
Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41389-019-0150-2
The epigenetic factor BORIS (CTCFL) controls the androgen receptor regulatory network in ovarian cancer
Cited by: 16
Author(s): Marisol Salgado-Albarrán, Rodrigo González‐Barrios, Lissania Guerra-Calderas, Nicolás Alcaraz, Thalía Estefanía Sánchez-Correa, Clementina Castro-Hernández, Yesennia Sánchez-Pérez, Elena Aréchaga-Ocampo, Alejandro García‐Carrancá, David Cantú de León, Luis A. Herrera, Jan Baumbach, Ernesto Soto-Reyes
Software Mentions: 3
Published: about 5 years ago
10.3390/plants10071262
Breeding Buckwheat for Nutritional Quality in the Czech Republic
Cited by: 8
Author(s): Dagmar Janovská, Michal Jágr, Pavel Svoboda, Václav Dvořāček, Vladimir Meglič, Petra Hlásná Čepková
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-92108-z
A combined biomarker approach for characterising extracellular matrix profiles in acute myocardial infarction
Cited by: 5
Author(s): Morgane M. Brunton-O’Sullivan, A. Holley, Kathryn Hally, Gisela A Kristono, Scott Harding, Peter Larsen
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0207096
Patient clusters based on HbA1c trajectories: A step toward individualized medicine in type 2 diabetes
Cited by: 31
Author(s): Tomas Karpati, Maya Leventer‐Roberts, Becca Feldman, Chandra Cohen-Stavi, Itamar Raz, Ran D. Balicer
Software Mentions: 3
Published: almost 6 years ago
10.1007/s00497-020-00398-6
Quantitative methods in microscopy to assess pollen viability in different plant taxa
Cited by: 9
Author(s): Lorenzo Ascari, Cristina Novara, Virginia Dusio, Ludovica Oddi, Consolata Siniscalco
Software Mentions: 3
Published: about 4 years ago
10.1186/s40478-021-01249-9
Immune cell deconvolution of bulk DNA methylation data reveals an association with methylation class, key somatic alterations, and cell state in glial/glioneuronal tumors
Cited by: 5
Author(s): Omkar Singh, Drew Pratt, Kenneth Aldape
Software Mentions: 3
Published: about 3 years ago
10.1128/mSystems.00777-19
Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome
Cited by: 37
Author(s): Florencia A.T. Boshier, Sujatha Srinivasan, Anthony Lopez, Noah G. Hoffman, Sean Proll, David N. Fredricks, Joshua T. Schiffer
Software Mentions: 3
Published: over 4 years ago
10.3390/genes11111359
Gene Expression Profile in Similar Tissues Using Transcriptome Sequencing Data of Whole-Body Horse Skeletal Muscle
Cited by: 2
Author(s): Hoyeon Lee, Jaeyoon Kim, Kyoung Hyoun Kim, Seongmun Jeong, Youngbum Cho, Namshin Kim
Software Mentions: 3
Published: almost 4 years ago
10.2196/10493
Unsupervised Machine Learning to Identify High Likelihood of Dementia in Population-Based Surveys: Development and Validation Study
Cited by: 47
Author(s): Laurent Cléret de Langavant, É. Bayen, Kristine Yaffe
Software Mentions: 3
Published: over 6 years ago
10.1186/s12859-020-03755-4
Embedding covariate adjustments in tree-based automated machine learning for biomedical big data analyses
Cited by: 9
Author(s): Elisabetta Manduchi, Weixuan Fu, Joseph D. Romano, Stefano Ruberto, Jason H. Moore
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-017-03476-4
Gut microbiota of liver transplantation recipients
Cited by: 37
Author(s): Li‐Ying Sun, Yunsheng Yang, Wei Qu, Zhi‐Jun Zhu, Wei Lin, Zhi‐Sheng Ye, Jian-Rui Zhang, Xuguo Sun, Zhili Zeng
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-56931-9
Farmer typology to understand differentiated climate change adaptation in Himalaya
Cited by: 30
Author(s): Roopam Shukla, Ankit Agarwal, Christoph Gornott, Kamna Sachdeva, P. K. Joshi
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-018-29186-z
Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales
Cited by: 5
Author(s): Joseph Schnitzler, Marianna Pinzone, Marijke Autenrieth, Abbo van Neer, Lonneke L. IJsseldijk, Jonathan L. Barber, Rob Deaville, Paul D. Jepson, Andrew Brownlow, Tobias Schaffeld, Jean-Pierre Thomé, Ralph Tiedemann, Krishna Das, Ursula Siebert
Software Mentions: 3
Published: over 6 years ago
10.1186/s40880-018-0277-0
Protein-coding genes combined with long noncoding RNA as a novel transcriptome molecular staging model to predict the survival of patients with esophageal squamous cell carcinoma
Cited by: 39
Author(s): Jincheng Guo, Yang Wu, Yang Chen, Feng Pan, Zhi‐Yong Wu, Jiasheng Zhang, Jian‐Yi Wu, Xiu‐E Xu, Jian Zhao, En‐Min Li, Yi Zhao, Li‐Yan Xu
Software Mentions: 3
Published: over 6 years ago
10.1186/s12919-020-00205-0
4th International Symposium of Advanced Topics in Exercise Physiology: Non-pharmacological treatment for the improvement of the quality of life in the Elderly
Cited by: 0
Author(s):
Software Mentions: 3
Published: almost 4 years ago
10.1093/gigascience/giz069
Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)
Cited by: 36
Author(s): Aki Ohdera, Cheryl Lewis Ames, Rebecca B. Dikow, Ehsan Kayal, Marta Chiodin, Ben Busby, Sean La, Stacy Pirro, Allen G. Collins, Mónica Medina, Joseph F. Ryan
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-44324-x
Breed differences of heritable behaviour traits in cats
Cited by: 29
Author(s): Milla Salonen, Katariina Vapalahti, Katriina Tiira, Asko Mäki‐Tanila, Hannes Lohi
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.3539
Habitat‐related seed germination traits in alpine habitats
Cited by: 25
Author(s): Maria Tudela‐Isanta, Eduardo Fernández‐Pascual, Malaka Wijayasinghe, Simone Orsenigo, Graziano Rossi, Hugh W. Pritchard, Andrea Mondoni
Software Mentions: 3
Published: almost 7 years ago