Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1008653

https://doi.org/10.1371/journal.ppat.1008653

Cited by: 39
Author(s): Silvia Sorce, Mario Nuvolone, Giancarlo Russo, Andra Chincisan, Daniel Heinzer, Merve Avar, Manuela Pfammatter, Petra Schwarz, Mirzet Delic, Mattia Müller, Simone Hornemann, Despina Sanoudou, Claudia Scheckel, Adriano Aguzzi
Published: almost 4 years ago

Software Mentions 14

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq data
Papers that mentioned: 14
cran: eulerr
Area-Proportional Euler and Venn Diagrams with Ellipses
Papers that mentioned: 47
cran: factoextra
Extract and Visualize the Results of Multivariate Data Analyses
Papers that mentioned: 650
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: NbClust
Determining the Best Number of Clusters in a Data Set
Papers that mentioned: 181
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431