10.1186/s43093-020-00041-w

Machine learning predictivity applied to consumer creditworthiness
Cited by: 13
Author(s): Maisa Cardoso Aniceto, Flávio Barboza, Herbert Kimura
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0111661

How Difficult Is Inference of Mammalian Causal Gene Regulatory Networks?
Cited by: 18
Author(s): Djordje Djordjevic, Andrian Yang, Armella Zadoorian, Kevin Rungrugeecharoen, Joshua W. K. Ho
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pgen.1004994

Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
Cited by: 147
Author(s): Kristofer Davie, Jelle Jacobs, Mardelle Atkins, Delphine Potier, Valerie Christiaens, Georg Halder, Stein Aerts
Software Mentions: 6
Published: over 11 years ago

10.3390/ijms22158123

HERON: A Novel Tool Enables Identification of Long, Weakly Enriched Genomic Domains in ChIP-seq Data
Cited by: 0
Author(s): Anna Macioszek, Bartek Wilczyński
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0090898

Reduced-Gliadin Wheat Bread: An Alternative to the Gluten-Free Diet for Consumers Suffering Gluten-Related Pathologies
Cited by: 79
Author(s): Javier Gil-Humanes, Fernando Pistón, Rossana Altamirano-Fortoul, Ana Real, Isabel Comino, Carolina Sousa, Cristina M. Rosell, Francisco Barro
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0153200

Comparison of Methodologies to Detect Low Levels of Hemolysis in Serum for Accurate Assessment of Serum microRNAs
Cited by: 143
Author(s): Jaynish S. Shah, Patsy S. Soon, Deborah J. Marsh
Software Mentions: 6
Published: over 10 years ago

10.1007/s12311-019-01029-1

The Effect of Cerebellar tDCS on Sequential Motor Response Selection
Cited by: 15
Author(s): Bryant J. Jongkees, Maarten A. Immink, Olga D. Boer, Fatemeh Yavari, Michael A. Nitsche, Lorenza S. Colzato
Software Mentions: 6
Published: about 7 years ago

10.1093/cid/ciaa1130

The First 100 Days of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Control in Vietnam
Cited by: 49
Author(s): Phạm Quang Thái, Maia A. Rabaa, Duong Huy Luong, Dang Quang Tan, Tran Dai Quang, Ha-Linh Quach, Ngoc-Anh Hoang, Phung Cong Dinh, Ngu Duy Nghia, Trần Anh Tú, La Ngoc Quang, Tran My Phuc, Vinh Q. Chau, Nguyễn Công Khanh, Đặng Đức Anh, Trần Như Dương, Guy Thwaites, H. Rogier van Doorn, Marc Choisy, Mary Chambers, Marc Choisy, Jeremy Day, Dong Huu Khanh Trinh, Dong Thi Hoai Tam, Joseph Donovan, Du Hong Duc, Ronald B. Geskus, Ho Quang Chanh, Hien Ho Van, Huong Dang Thao, Huynh Le Anh Huy, Huynh Ngan Ha, Huynh Trung Trieu, H Yen, Evelyne Kestelyn, Thomas Kesteman, Lam Anh Nguyet, Lam Minh Yen, Katrina Lawson, Le Kim Thanh, Le Nguyen Truc Nhu, Le Thanh Hoang Nhat, Le Thi Hoang Lan, Tan Le Van, Sonia Lewycka, Nguyen Bao Tran, Nguyen Minh Nguyet, Nguyen Than Ha Quyen, Nguyen Thanh Ngoc, Nguyen Thi Han Ny, Nguyễn Thị Thương, Nguyễn Thị Huyền Trang, Nguyen Thi Kim Tuyen, Nguyen Thi Ngọc Diep, Nguyen Thi Dung, Nguyễn Thị Thanh Tâm, Nguyen Thi Thu Hong, Nguyễn Thu Trang, Vinh Chau Nguyen Van, Nguyen Xuan Truong, Ninh Thi Thanh Van, Phan Nguyen Quoc Khanh, Phung Khanh Lam, Phung Le Kim Yen, Phung Tran Huy Nhat, Maia A. Rabaa, Thuong Nguyen Thuy Thuong, Guy Thwaites, Louise Thwaites, Tran My Phuc, Tran Tan Thanh, Trần Thị Bích Ngọc, Tran Tinh Hien, Doorn H Rogier van, Nuil Jennifer van, Vinh Q. Chau, Vu Thi Bich, Vu Thi Ty Hang, Sophie Yacoub
Software Mentions: 6
Published: almost 6 years ago

10.3390/cells9051179

Functional Characterisation of the Autophagy ATG12~5/16 Complex in Dictyostelium discoideum
Cited by: 13
Author(s): Malte Karow, Sarah Fischer, Susanne Meßling, Roman Konertz, Jana Riehl, Qiuhong Xiong, Ramesh Rijal, Prerana Wagle, Christoph S. Clemen, Ludwig M. Eichinger
Software Mentions: 6
Published: about 6 years ago

10.1186/s13148-021-01017-5

Genetic, epigenetic, and environmental factors controlling oxytocin receptor gene expression
Cited by: 36
Author(s): Joshua S. Danoff, Kelly L. Wroblewski, Andrew J. Graves, Graham C. Quinn, Allison M. Perkeybile, William M. Kenkel, Travis S. Lillard, Hardik I. Parikh, Hudson Golino, Simon Gregory, C. Sue Carter, Karen L. Bales, Jessica J. Connelly
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-021-01673-6

Glacial melt disturbance shifts community metabolism of an Antarctic seafloor ecosystem from net autotrophy to heterotrophy
Cited by: 11
Author(s): Ulrike Braeckman, Francesca Pasotti, Ralf Hoffmann, Susana Vázquez, Angela Wulff, Irene R Schloss, Ulrike Falk, Dolores Deregibus, Nene Lefaible, Anders Torstensson, Adil Y. Al-Handal, Frank Wenzhöfer, Ann Vanreusel
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-015-0729-3

htsint: a Python library for sequencing pipelines that combines data through gene set generation
Cited by: 1
Author(s): Adam Richards, Anthony Herrel, Camille Bonneaud
Software Mentions: 6
Published: almost 11 years ago

10.1002/ece3.4585

Do replicates of independent guppy lineages evolve similarly in a predator-free laboratory environment?
Cited by: 4
Author(s): Kiyoko M. Gotanda, Amy Pack, Caroline Leblond, Andrew P. Hendry
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.6298

Convergent morphological responses to loss of flight in rails (Aves: Rallidae)
Cited by: 8
Author(s): Julien Gaspar, Gillian C. Gibb, Steven A. Trewick
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-75998-3

Transcriptomic profiling of feline teeth highlights the role of matrix metalloproteinase 9 (MMP9) in tooth resorption
Cited by: 8
Author(s): S. Lee, Stephen J. Bush, Susan Thorne, Nicola Mawson, Colin Farquharson, Guraa Bergkvist
Software Mentions: 6
Published: over 5 years ago

10.1534/g3.120.401491

High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (<i>Lolium perenne</i>L.)
Cited by: 20
Author(s): Thomas Keep, Jean‐Paul Sampoux, José Luis Blanco‐Pastor, Klaus J. Dehmer, Matthew J. Hegarty, Thomas Ledauphin, Isabelle Litrico, Hilde Muylle, Isabel Roldán‐Ruiz, Anna M. Roschanski, Tom Ruttink, Fabien Surault, E. Willner, Philippe Barré
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-020-74567-y

Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction
Cited by: 11
Author(s): Tong Li, Po-Yen Wu, John H. Phan, Hamid R Hassazadeh, Weida Tong, May D. Wang
Software Mentions: 6
Published: over 5 years ago

10.1186/s40104-021-00584-0

Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM)
Cited by: 6
Author(s): Raphaële Gresse, Frédérique Chaucheyras‐Durand, Sylvain Denis, Martín Beaumont, Tom Van de Wiele, Evelyne Forano, Stéphanie Blanquet-Diot
Software Mentions: 6
Published: about 5 years ago

10.21105/joss.02410

Viime: Visualization and Integration of Metabolomics Experiments
Cited by: 6
Author(s): Roni Choudhury, Jon Beezley, Brandon Davis, Jared Tomeck, Samuel Gratzl, Lilian Golzarri‐Arroyo, Jun Wan, Daniel Raftery, Jeff Baumes, Thomas M. O’Connell
Software Mentions: 6
Published: over 5 years ago

10.1186/s13059-015-0741-y

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Cited by: 222
Author(s): Jean Philippe Fortin, Kasper D. Hansen
Software Mentions: 6
Published: almost 11 years ago

10.1038/s41598-018-22436-0

Variation in avian egg shape and nest structure is explained by climatic conditions
Cited by: 30
Author(s): Daisy Englert Duursma, Rachael V. Gallagher, Joseph Price, Simon C. Griffith
Software Mentions: 6
Published: over 8 years ago

10.1002/pld3.159

The <i>HAC1</i> histone acetyltransferase promotes leaf senescence and regulates the expression of <i>ERF022</i>
Cited by: 28
Author(s): Will E. Hinckley, Keykhosrow Keymanesh, Jaime Cordova, Judy A. Brusslan
Software Mentions: 6
Published: almost 7 years ago

10.1038/ismej.2017.165

Recurrent patterns of microdiversity in a temperate coastal marine environment
Cited by: 110
Author(s): Meghan Chafee, Antonio Fernández-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A. Murat Eren, Hanno Teeling, Rudolf Amann
Software Mentions: 6
Published: over 8 years ago

10.1155/2018/5463762

Adiponectin and Leptin at Early Pregnancy: Association to Actual Glucose Disposal and Risk for GDM—A Prospective Cohort Study
Cited by: 25
Author(s): Latife Bozkurt, Christian Göbl, Sabina Baumgartner‐Parzer, Anton Luger, Giovanni Pacini, Alexandra Kautzky–Willer
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-020-66519-3

Interconnection of bacterial and phytoplanktonic communities with hydrochemical parameters from ice and under-ice water in coastal zone of Lake Baikal
Cited by: 10
Author(s): Yu. S. Bukin, Н. А. Бондаренко, Igor I Rusanov, Nikolai V. Pimenov, S. V. Bukin, T. V. Pogodaeva, S. M. Chernitsyna, O. V. Shubenkova, V. G. Ivanov, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-019-56049-y

Availability of orchid mycorrhizal fungi on roadside trees in a tropical urban landscape
Cited by: 17
Author(s): Muhammad Izuddin, Amrita Srivathsan, Ai‐Lan Lee, Tim Wing Yam, Edward L. Webb
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-65223-6

Using an Innovation Arena to compare wild-caught and laboratory Goffin’s cockatoos
Cited by: 19
Author(s): Theresa Rößler, Berenika Mioduszewska, Mark O’Hara, Ludwig Huber, Dewi M. Prawiradilaga, Alice M. I. Auersperg
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-91730-1

Trophic niches of native and nonnative fishes along a river-reservoir continuum
Cited by: 8
Author(s): Casey A. Pennock, Zachary T. Ahrens, Mark C. McKinstry, Phaedra Budy, Keith B. Gido
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-019-46932-z

DMSO cryopreservation is the method of choice to preserve cells for droplet-based single-cell RNA sequencing
Cited by: 73
Author(s): Christian T. Wohnhaas, Germán Leparc, Francesc Fernández-Albert, David Kind, Florian Gantner, Coralie Viollet, Tobias Hildebrandt, Patrick Baum
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-020-65210-x

Flexibility of little auks foraging in various oceanographic features in a changing Arctic
Cited by: 21
Author(s): Dariusz Jakubas, Katarzyna Wojczulanis‐Jakubas, Lech Iliszko, Dorota Kidawa, Rafał Boehnke, Katarzyna Błachowiak‐Samołyk, Lech Stempniewicz
Software Mentions: 6
Published: about 6 years ago

10.1007/s00122-021-03832-z

Paternal outcrossing success differs among faba bean genotypes and impacts breeding of synthetic cultivars
Cited by: 6
Author(s): Lisa Brünjes, Wolfgang Link
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00398-20

System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Cited by: 3
Author(s): Hsiao Pei Lu, Yung Hsien Shao, Jer Horng Wu, Chih‐hao Hsieh
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41396-021-00939-5

Competition between strains of Borrelia afzelii in the host tissues and consequences for transmission to ticks
Cited by: 7
Author(s): Dolores Genné, Marika Rossel, Anouk Sarr, Florian Battilotti, Olivier Rais, Ryan O. M. Rego, Maarten J. Voordouw
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.07.06.21259528

Pre-vaccination and early B cell signatures predict antibody response to SARS-CoV-2 mRNA vaccine
Cited by: 2
Author(s): Lela Kardava, Nicholas Rachmaninoff, Lau Ww, Buckner Cm, Krittin Trihemasava, de Assis Fl, W Wang, X Zhang, Y Wang, Cheng Feng Chiang, Sandeep Narpala, Robert Reger, McCormack Ge, Seamon Ca, Childs Rw, A. F. Suffredini, Strich, Chertow Ds, Davey Rt, Sneller Mc, Sarah O’Connell, Li Y, Adrian B. McDermott, Tae‐Wook Chun, Fauci As, Tsang Js, Susan Moir
Software Mentions: 6
Published: about 5 years ago

10.1007/s00442-021-05022-6

Nightly torpor use in response to weather conditions and individual state in an insectivorous bat
Cited by: 5
Author(s): Mari Aas Fjelldal, Jonathan Wright, Clare Stawski
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12918-018-0581-y

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
Cited by: 49
Author(s): Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher
Software Mentions: 6
Published: about 8 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 5 years ago

10.1186/1758-2946-3-51

An investigation into pharmaceutically relevant mutagenicity data and the influence on Ames predictive potential
Cited by: 47
Author(s): Patrick McCarren, Clayton Springer, Lewis Whitehead
Software Mentions: 6
Published: over 14 years ago

10.1089/cmb.2019.0320

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Cited by: 8
Author(s): Jeļena Fiošina, Maksims Fiošins, Stefan Bonn
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pcbi.1005351

ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour
Cited by: 3
Author(s): Stephanie Evans, Kieran Alden, Lourdes Cucurull‐Sanchez, Christopher Larminie, Mark Coles, Marika C. Kullberg, Jon Timmis
Software Mentions: 6
Published: over 9 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: over 5 years ago

10.1186/s13326-020-00228-8

Identifying disease trajectories with predicate information from a knowledge graph
Cited by: 4
Author(s): Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 6
Published: almost 6 years ago

10.7554/eLife.02535

High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species
Cited by: 111
Author(s): Molly Schumer, Rongfeng Cui, Daniel L. Powell, Rebecca Dresner, Gil G. Rosenthal, Peter Andolfatto
Software Mentions: 6
Published: about 12 years ago

10.1038/s41598-017-13056-1

A machine-learning heuristic to improve gene score prediction of polygenic traits
Cited by: 63
Author(s): Guillaume Paré, Mao S, Wei Q. Deng
Software Mentions: 6
Published: almost 9 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0152686

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
Cited by: 42
Author(s): Ling‐Hong Hung, Daniel Kristiyanto, Sung Bong Lee, Ka Yee Yeung
Software Mentions: 6
Published: over 10 years ago

10.1093/gigascience/giz037

GenPipes: an open-source framework for distributed and scalable genomic analyses
Cited by: 107
Author(s): Mathieu Bourgey, Rola Dali, Robert Eveleigh, Kuang Chung Chen, Louis Létourneau, Joël Fillon, Marc Michaud, Maxime Caron, Johanna Sandoval, François Lefebvre, Gary Leveque, Eloi Mercier, David Bujold, Pascale Marquis, Patrick Tran Van, David Anderson de Lima Morais, Julien Tremblay, Xiaojian Shao, Édouard Henrion, Emmanuel González, Pierre-Olivier Quirion, B. Caron, Guillaume Bourque
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-020-79732-x

Assessing coral sperm motility
Cited by: 7
Author(s): Nikolas Zuchowicz, Jonathan Daly, Jessica Bouwmeester, Claire Lager, E. Michael Henley, C. Isabel Nuñez Lendo, Mary Hagedorn
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.1401

An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64
Cited by: 18
Author(s): Robert Winkler
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-020-79130-3

Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil’s Atlantic Forest treefrogs
Cited by: 14
Author(s): Katharina Ruthsatz, Mariana L. Lyra, Carolina Lambertini, Anat M. Belasen, Thomas S. Jenkinson, Domingos da Silva Leite, C. Guilherme Becker, Célio F. B. Haddad, Timothy Y. James, Kelly R. Zamudio, Luı́s Felipe Toledo, Miguel Vences
Software Mentions: 6
Published: over 5 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-77940-z

Linking human male vocal parameters to perceptions, body morphology, strength and hormonal profiles in contexts of sexual selection
Cited by: 17
Author(s): Christoph Schild, Toe Aung, Tobias L. Kordsmeyer, Rodrigo A. Cárdenas, David A. Puts, Lars Penke
Software Mentions: 6
Published: over 5 years ago

10.1186/s10194-019-0987-y

Predicting treatment response using pharmacy register in migraine
Cited by: 6
Author(s): Thomas Folkmann Hansen, Mona Ameri Chalmer, Thilde Marie Haspang, Lisette J. A. Kogelman, Jes Olesen
Software Mentions: 6
Published: over 7 years ago

10.3390/ijms21218160

Proteomic Profiling of Archived Tissue of Primary Melanoma Identifies Proteins Associated with Metastasis
Cited by: 3
Author(s): Andrew Shapanis, Chester Lai, Mathew Sommerlad, Erika Parkinson, Eugene Healy, Paul Skipp
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-77878-2

Recent land use and management changes decouple the adaptation of livestock diversity to the environment
Cited by: 9
Author(s): Elena Velado‐Alonso, Ignacio Morales‐Castilla, Antonio Gómez‐Sal
Software Mentions: 6
Published: over 5 years ago

10.1038/srep33696

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests
Cited by: 247
Author(s): Kristin Kaiser, Bernd Wemheuer, Vera Korolkow, Franziska Wemheuer, Heiko Nacke, Ingo Schöning, Marion Schrumpf, Rolf Daniel
Software Mentions: 6
Published: almost 10 years ago

10.3389/fmed.2021.681388

A Five-Gene-Based Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Dean Tian, Yang Yu, Li Zhang, Jiufeng Sun, Wentao Jiang
Software Mentions: 6
Published: almost 5 years ago

10.3390/genes11121465

Plant TDP1 (Tyrosyl-DNA Phosphodiesterase 1): A Phylogenetic Perspective and Gene Expression Data Mining
Cited by: 2
Author(s): Giacomo Mutti, Alessandro Raveane, Andrea Pagano, Francesco Bertolini, Ornella Semino, Alma Balestrazzi, Anca Macovei
Software Mentions: 6
Published: over 5 years ago

10.1038/s41438-020-0316-2

Draft genome of the Native American cold hardy grapevine Vitis riparia Michx. ‘Manitoba 37’
Cited by: 16
Author(s): Sagar Patel, Michael Robben, Anne Fennell, Jason P. Londo, Dilmini Alahakoon, Roberto Villegas-Diaz, Padmapriya Swaminathan
Software Mentions: 6
Published: about 6 years ago

10.1097/HS9.0000000000000371

Longitudinal Cytokine Profiling Identifies GRO-α and EGF as Potential Biomarkers of Disease Progression in Essential Thrombocythemia
Cited by: 33
Author(s): Nina Friesgaard Øbro, Jacob Grinfeld, Miriam Belmonte, Melissa Irvine, Mairi Shepherd, Tata Nageswara Rao, Axel Karow, Lisa M Riedel, Oliva B Harris, E. Joanna Baxter, Jyoti Nangalia, Anna L. Godfrey, Claire Harrison, Juan Li, Radek C. Skoda, Peter J. Campbell, Andrew Green, David G. Kent
Software Mentions: 6
Published: about 6 years ago

10.1080/19490976.2021.1900995

Expansion and persistence of antibiotic-specific resistance genes following antibiotic treatment
Cited by: 21
Author(s): Kang Kang, Lejla Imamovic, Maria-Anna Misiakou, Maria Bornakke Sørensen, Yoshitaro Heshiki, Yueqiong Ni, Tingting Zheng, Jun Li, Mostafa Mostafa Hashim Ellabaan, Marta Colomer-Lluch, Anne A Rode, Peter Bytzer, Gianni Panagiotou, Morten Otto Alexander Sommer
Software Mentions: 6
Published: over 5 years ago

10.1093/gigascience/giz050

Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions
Cited by: 48
Author(s): Lovely Mae F Lawas, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Ellen Zuther, Dirk K. Hincha
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0233823

Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1
Cited by: 8
Author(s): Gina Chaput, Andrew F. Billings, Lani DeDiego, Roberto Orellana, Joshua N. Adkins, Carrie Nicora, Young Mo Kim, Rosalie K. Chu, Blake A. Simmons, Kristen M. DeAngelis
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pcbi.1008414

Modelling thalamocortical circuitry shows that visually induced LTP changes laminar connectivity in human visual cortex
Cited by: 4
Author(s): Rachael L. Sumner, Meg J. Spriggs, Alexander D Shaw
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0116095

ICan: An Integrated Co-Alteration Network to Identify Ovarian Cancer-Related Genes
Cited by: 9
Author(s): Yuanshuai Zhou, Yongjing Liu, Kening Li, Rui Zhang, Fujun Qiu, Ning Zhao, Yan Xu
Software Mentions: 6
Published: over 11 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1004274

Genome Modeling System: A Knowledge Management Platform for Genomics
Cited by: 77
Author(s): Malachi Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam Coffman, Allison Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, R.L. Long, Travis E. Abbott, Ian T. Ferguson, David Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam F. Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher Harris, Nicole Maher, Christopher A. Maher, Vincent Magrini, Benjamin Abbott, Ken Chen, Eric M. Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd Wylie, Shawn Leonard, W.E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason Walker, James M. Eldred, David E. Larson, David J. Dooling, Ding Li, Elaine R. Mardis, Richard K. Wilson
Software Mentions: 6
Published: almost 11 years ago

10.3389/fmicb.2021.614634

Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard)
Cited by: 14
Author(s): Lisa-Marie Delpech, Tobias R. Vonnahme, Maeve McGovern, Rolf Gradinger, Kim Præbel, Amanda Poste
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.675693

Nitrogen Fertilization and Native C4 Grass Species Alter Abundance, Activity, and Diversity of Soil Diazotrophic Communities
Cited by: 10
Author(s): Jialin Hu, Jonathan D. Richwine, Patrick D. Keyser, Lidong Li, Fei Yao, Sindhu Jagadamma, Jennifer M. DeBruyn
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2018.00186

Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland
Cited by: 70
Author(s): Weiwei She, Yuxuan Bai, Yuqing Zhang, Shugao Qin, Wei Feng, Yanfei Sun, Jufeng Zheng, Bin Wu
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: about 8 years ago

10.3389/fmicb.2017.01452

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition
Cited by: 88
Author(s): Jacob D. Hosen, Catherine M. Febria, Byron C. Crump, Margaret A. Palmer
Software Mentions: 6
Published: almost 9 years ago

10.3389/fmicb.2020.01451

Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa
Cited by: 19
Author(s): Errol D. Cason, Bokang John Mahlomaholo, Matšepo M. Taole, George Ooko Abong, Jan‐G Vermeulen, Olga de Smidt, Marcele Vermeulen, Laurinda Steyn, Ángel Valverde, Bennie C. Viljoen
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2020.01860

Seasonal and Spatial Variations in Bacterial Communities From Tetrodotoxin-Bearing and Non-tetrodotoxin-Bearing Clams
Cited by: 7
Author(s): Laura Biessy, John K. Pearman, Kirsty F. Smith, Ian Hawes, Susanna A. Wood
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41438-018-0090-6

Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping
Cited by: 50
Author(s): Tetyana Zhebentyayeva, Vijay Shankar, R. Scorza, Ann M. Callahan, Michel Ravelonandro, Sarah Castro, Theodore M. DeJong, Christopher Saski, Chris Dardick
Software Mentions: 6
Published: over 7 years ago

10.1186/s40170-020-00217-6

Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer
Cited by: 56
Author(s): Kaylyn D. Tousignant, Anja Rockstroh, Berwyck L. J. Poad, Ali Talebi, Reuben S. E. Young, Atefeh Taherian Fard, Rajesh Gupta, Tuo Zang, Chenwei Wang, Melanie Lehman, Johan Swinnen, Stephen J. Blanksby, Colleen C. Nelson, Martin C. Sadowski
Software Mentions: 6
Published: about 6 years ago

10.3389/fimmu.2020.00435

Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells
Cited by: 10
Author(s): Stephanie S Pavlovich, Tamarand L. Darling, Adam J. Hume, Robert A. Davey, Feng Feng, Elke Mühlberger, Thomas B. Kepler
Software Mentions: 6
Published: over 6 years ago

10.3389/fgene.2020.606222

Agricultural Landscape Heterogeneity Matter: Responses of Neutral Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree
Cited by: 5
Author(s): Tatiana Souza do Amaral, Juliana Silveira dos Santos, Fernanda Fraga Rosa, Marcelo Bruno Pessôa, Lázaro José Chaves, Milton Cézar Ribeiro, Rosane Garcia Collevatti
Software Mentions: 6
Published: over 5 years ago

10.26508/lsa.201900520

Dynamic changes in the regulatory T-cell heterogeneity and function by murine IL-2 mutein
Cited by: 11
Author(s): Daniel Lu, Hao Wu, Ian Driver, Sarah Ingersoll, Sue J. Sohn, Songli Wang, Chi-Ming Li, Hyewon Phee
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.638458

Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 5
Author(s): Li Hu, Zhibin Han, Xingbo Cheng, Sida Wang, Yumeng Feng, Zhiguo Lin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-020-03707-y

A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data
Cited by: 11
Author(s): Michael Sekula, Jeremy Gaskins, Susmita Datta
Software Mentions: 6
Published: almost 6 years ago

10.1016/j.cub.2020.11.013

When Natural Behavior Engages Working Memory
Cited by: 45
Author(s): Dejan Draschkow, Melvin Kallmayer, Anna C. Nobre
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-019-0572-6

pathCHEMO, a generalizable computational framework uncovers molecular pathways of chemoresistance in lung adenocarcinoma
Cited by: 7
Author(s): Nusrat J Epsi, Sukanya Panja, Sharon R. Pine, Antonina Mitrofanova
Software Mentions: 6
Published: almost 7 years ago

10.3389/fimmu.2018.01634

Robust B Cell Responses Predict Rapid Resolution of Lyme Disease
Cited by: 22
Author(s): Lisa K. Blum, Julia Z. Adamska, Dale S. Martin, Alison W. Rebman, Serra E. Elliott, Richard R.L. Cao, Monica E. Embers, Mark J. Soloski, William H. Robinson
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0256678

Hospital-level factors associated with death during pneumonia-associated hospitalization among adults—New York City, 2010–2014
Cited by: 0
Author(s): Kate Whittemore, Kristian M. Garcia, Chaorui Huang, Sungwoo Lim, Demetre Daskalakis, Neil M. Vora, David E. Lucero
Software Mentions: 6
Published: almost 5 years ago

10.7150/thno.54917

Single-cell transcriptome profiling reveals vascular endothelial cell heterogeneity in human skin
Cited by: 36
Author(s): Qingyang Li, Zhenlai Zhu, Lei Wang, Yi‐Ting Lin, Hui Fang, Jie Lei, Tianyu Cao, Gang Wang, Erle Dang
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms21176283

Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella
Cited by: 22
Author(s): Fei‐Ying Yang, Hafiz Sohaib Ahmed Saqib, Junhui Chen, Qian‐Qian Ruan, Liette Vasseur, Weiyi He, Minsheng You
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0251653

Minimally invasive brain injections for viral-mediated transgenesis: New tools for behavioral genetics in sticklebacks
Cited by: 2
Author(s): Noelle James, Alison M. Bell
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0109760

Copy Number Loss of the Interferon Gene Cluster in Melanomas Is Linked to Reduced T Cell Infiltrate and Poor Patient Prognosis
Cited by: 164
Author(s): Peter S. Linsley, Cate Speake, Elizabeth Whalen, Damien Chaussabel
Software Mentions: 6
Published: over 11 years ago

10.1038/s41598-020-74428-8

Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient
Cited by: 6
Author(s): Malin Olofsson, James G. Hagan, Bengt Karlson, Lars Gamfeldt
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1000193

Analysis of Gene Regulatory Networks in the Mammalian Circadian Rhythm
Cited by: 236
Author(s): Jun Yan, Haifang Wang, Yuting Liu, Chunxuan Shao
Software Mentions: 6
Published: over 17 years ago

10.1371/journal.pone.0215838

Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibility
Cited by: 11
Author(s): Weiwei Zhang, Cheng Wang, Xuan Zhang
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0235328

Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections
Cited by: 10
Author(s): Liang Dong, Joshua R. Watson, Sha Cao, Samuel Arregui, Vijay Saxena, John Ketz, Abduselam K. Awol, Daniel M. Cohen, Jeffrey M. Caterino, David S. Hains, Andrew L. Schwaderer
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-017-09738-5

Anosmia impairs homing orientation but not foraging behaviour in free-ranging shearwaters
Cited by: 26
Author(s): Oliver Padget, Gaia Dell’Ariccia, Ana Gagliardo, Jacob González‐Solís, Tim Guilford
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0060045

The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLs
Cited by: 37
Author(s): Nathalie Villa-Vialaneix, Laurence Liaubet, Thibault Laurent, Pierre Chérel, Adrien Gamot, Magali SanCristobal
Software Mentions: 6
Published: over 13 years ago

10.1371/journal.pone.0197074

Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pmed.1002869

Assessing trends in the content of maternal and child care following a health system strengthening initiative in rural Madagascar: A longitudinal cohort study
Cited by: 9
Author(s): Camille Ezran, Matthew H. Bonds, Ann C. Miller, Laura Cordier, Justin Haruna, David Mwanawabenea, Marius Randriamanambintsoa, Hery-Tiana Rahaniraka Razanadrakato, Mohammed Ali Ouenzar, Bénédicte Razafinjato, Megan Murray, Andrés Garchitorena
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0205291

CytoBinning: Immunological insights from multi-dimensional data
Cited by: 1
Author(s): Yang Shen, Benjamin Chaigne-Delalande, Richard W. Lee, Wolfgang Losert
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pntd.0009567

Inequalities of visceral leishmaniasis case-fatality in Brazil: A multilevel modeling considering space, time, individual and contextual factors
Cited by: 18
Author(s): Gláucia Cota, Astrid Erber, Eva Schernhammer, Taynãna César Simões
Software Mentions: 6
Published: about 5 years ago