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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12859-016-1104-8

https://doi.org/10.1186/s12859-016-1104-8

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

Cited by: 75
Author(s): Masaomi Hatakeyama, Lennart Opitz, Giancarlo Russo, Weihong Qi, Ralph Schlapbach, Hubert Rehrauer
Published: about 9 years ago

Software Mentions 6

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
pypi: bpipe
Minimal & Simple Pipeline for Python
Papers that mentioned: 11
Very Likely Science (65)
pypi: nestly
Nestly is a collection of functions designed to make running software with combinatorial choices of parameters easier.
Papers that mentioned: 1
Very Likely Science (80)
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207
Very Likely Science (85)
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
Very Likely Science (90)