An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1038/s41598-021-89938-2

https://doi.org/10.1038/s41598-021-89938-2

Improved methods for RNAseq-based alternative splicing analysis

Cited by: 20
Author(s): Rebecca F. Halperin, Apurva M. Hegde, Jessica D. Lang, Elizabeth A. Raupach, Christophe Legendre, Winnie S. Liang, Patricia LoRusso, Aleksandar Sekulić, Jeffrey A. Sosman, Jeffrey M. Trent, Sampathkumar Rangasamy, Patrick Pirrotte, Nicholas J. Schork
Published: about 4 years ago

Software Mentions 6

bioconductor: ballgown
Flexible, isoform-level differential expression analysis
Papers that mentioned: 21
Very Likely Science (100)
bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq data
Papers that mentioned: 14
Very Likely Science (75)
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: star
import star
Papers that mentioned: 39
Very Likely Science (90)