Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1806-0

https://doi.org/10.1186/s13059-019-1806-0

scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data

Cited by: 15
Author(s): Ruoxin Li, Gerald Quon
Published: about 5 years ago

Software Mentions 6

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: scBFA
A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq
Papers that mentioned: 2
cran: SAVER
Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512