10.3389/fnins.2019.01042

Previous Musical Experience and Cortical Thickness Relate to the Beneficial Effect of Motor Synchronization on Auditory Function
Cited by: 3
Author(s): Natascha Merten, Johanna Kramme, Monique M.B. Breteler, Sibylle C. Herholz
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12864-017-3662-1

Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals
Cited by: 18
Author(s): Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
Software Mentions: 7
Published: about 9 years ago

10.1371/journal.pone.0242191

EZH2 is a negative prognostic biomarker associated with immunosuppression in hepatocellular carcinoma
Cited by: 20
Author(s): Baoqiang Guo, Xiaohong Tan, Hong Cen
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2019.02887

Soil Microbial Networks Shift Across a High-Elevation Successional Gradient
Cited by: 13
Author(s): Emily C. Farrer, Dorota L. Porazinska, Marko J. Spasojevic, Andrew J. King, Clifton P. Bueno de Mesquita, Samuel A. Sartwell, J. A. Smith, C. T. White, Steven K. Schmidt, Katharine N. Suding
Software Mentions: 6
Published: over 6 years ago

10.3389/fcell.2021.638374

Single-Cell Analysis Reveals Spatial Heterogeneity of Immune Cells in Lung Adenocarcinoma
Cited by: 9
Author(s): Youyu Wang, Xiaohua Li, Peng Shu, Honglin Hu, Yuntao Wang, Mengqi Shao, Gang Feng, Yu Liu, Yifeng Bai
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pgen.1009035

The DNA methylome of human sperm is distinct from blood with little evidence for tissue-consistent obesity associations
Cited by: 12
Author(s): Fredrika Åsenius, T.J. Gorrie-Stone, Ama Brew, Yasmin Panchbhaya, Elizabeth Williamson, Leonard C Schalkwyk, Vardhman K. Rakyan, Michelle L. Holland, Sarah Marzi, David Williams
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-13-S16-S10

A tutorial in displaying mass spectrometry-based proteomic data using heat maps
Cited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: over 13 years ago

10.1038/s41598-018-23494-0

Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts
Cited by: 6
Author(s): Jeffrey Thompson, Brock C. Christensen, Carmen J. Marsit
Software Mentions: 6
Published: over 8 years ago

10.1186/s12859-019-3178-6

SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
Cited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.2452

Canopy position has a profound effect on soybean seed composition
Cited by: 27
Author(s): Steven C. Huber, Kunzhi Li, Randall L. Nelson, Alexander Ulanov, Catherine M. DeMuro, Ivan Baxter
Software Mentions: 6
Published: almost 10 years ago

10.3389/fimmu.2021.676173

Interleukin-17A Causes Osteoarthritis-Like Transcriptional Changes in Human Osteoarthritis-Derived Chondrocytes and Synovial Fibroblasts In Vitro
Cited by: 20
Author(s): Jolet Y Mimpen, Mathew Baldwin, Adam P. Cribbs, Martin Philpott, Andrew Carr, Stephanie G. Dakin, Sarah Snelling
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/5786053

Integrating Network Pharmacology with Molecular Docking to Unravel the Active Compounds and Potential Mechanism of Simiao Pill Treating Rheumatoid Arthritis
Cited by: 16
Author(s): Mengshi Tang, Xiaoqing Xie, Pan Yi, Jin Seok Kang, Jiafen Liao, Wenqun Li, Fen Li
Software Mentions: 6
Published: over 5 years ago

10.3390/metabo11060361

Opposing Effects of Ceanothus velutinus Phytochemistry on Herbivore Communities at Multiple Scales
Cited by: 2
Author(s): Casey S. Philbin, M. J. Paulsen, Lora A. Richards
Software Mentions: 6
Published: about 5 years ago

10.3390/cancers12113380

Cancer-Associated Angiogenesis: The Endothelial Cell as a Checkpoint for Immunological Patrolling
Cited by: 69
Author(s): Antonio Giovanni Solimando, Simona De Summa, Angelo Vacca, Doménico Ribatti
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-92933-2

Exhaled volatilome analysis as a useful tool to discriminate asthma with other coexisting atopic diseases in women of childbearing age
Cited by: 6
Author(s): Rosa Alba Sola Martínez, Gema Lozano‐Terol, Julia Gallego‐Jara, Eva Morales, Esther Cantero‐Cano, Manuel Rolandi Sánchez-Solís, Luis García‐Marcos, Pedro Jiménez‐Guerrero, José Antonio Noguera-Velasco, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12859-019-2643-6

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_
Cited by: 8
Author(s): Marco Moretto, Paolo Sonego, Ana B. Villasenõr-Altamirano, Kristof Engelen
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-80111-9

FAK regulates IL-33 expression by controlling chromatin accessibility at c-Jun motifs
Cited by: 13
Author(s): Billie G. C. Griffith, Rosanna Upstill-Goddard, Holly Brunton, Graeme R. Grimes, Andrew V. Biankin, Bryan Serrels, Adam Byron, Margaret C. Frame
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12040549

Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: about 5 years ago

10.1080/21642850.2018.1472602

Scale validation in applied health research: tutorial for a 6-step R-based psychometrics protocol
Cited by: 69
Author(s): Alexandra Dima
Software Mentions: 6
Published: over 8 years ago

10.15252/embr.201846401

Inherent <scp>DNA</scp> ‐binding specificities of the <scp>HIF</scp> ‐1α and <scp>HIF</scp> ‐2α transcription factors in chromatin
Cited by: 128
Author(s): James Smythies, Min Sun, Norma Masson, Rafik Salama, Peter Simpson, Elizabeth R. Murray, Viviana K. Neumann, Matthew E. Cockman, Hani Choudhry, Peter J. Ratcliffe, David R. Mole
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-72095-3

Quantification of colorimetric isothermal amplification on the smartphone and its open-source app for point-of-care pathogen detection
Cited by: 42
Author(s): Huynh Quoc Nguyen, Van Dan Nguyen, Hau Van Nguyen, Tae Seok Seo
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13059-020-02160-7

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
Cited by: 33
Author(s): Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin
Software Mentions: 6
Published: almost 6 years ago

10.3390/biology10090943

Response to Climate Change: Evaluation of Methane Emissions in Northern Australian Beef Cattle on a High Quality Diet Supplemented with Desmanthus Using Open-Circuit Respiration Chambers and GreenFeed Emission Monitoring Systems
Cited by: 6
Author(s): Bénédicte Suybeng, Felista W. Mwangi, Christopher S. McSweeney, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 6
Published: almost 5 years ago

10.1002/2211-5463.12692

Multidimensional profiling of drug‐treated cells by Imaging Mass Cytometry
Cited by: 33
Author(s): Alexandre Bouzekri, Amanda Esch, Olga Ornatsky
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41398-020-0710-4

Large epigenome-wide association study of childhood ADHD identifies peripheral DNA methylation associated with disease and polygenic risk burden
Cited by: 49
Author(s): Michael A. Mooney, Peter Ryabinin, Beth Wilmot, Priya Bhatt, Jonathan Mill, Joel T. Nigg
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-019-2780-y

Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data
Cited by: 11
Author(s): Lea Urpa, Simon Anders
Software Mentions: 6
Published: about 7 years ago

10.3390/ijerph18168656

Traditional Gender Differences Create Gaps in the Effect of COVID-19 on Psychological Distress of Japanese Workers
Cited by: 10
Author(s): Tomoyuki Kobayashi, Masaharu Maeda, Yui Takebayashi, Hideki Sato
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12866-019-1672-7

An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR
Cited by: 26
Author(s): Shi-Qi An, Miguel A. Valvano, Yu Yi, Jeremy S. Webb, Guillermo López–Campos
Software Mentions: 6
Published: over 6 years ago

10.3390/genes12060898

A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets
Cited by: 4
Author(s): Deeksha Doddahonnaiah, Patrick Lenehan, Travis Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg, Akash Anand, Rakesh Barve, Viswanathan Thiagarajan, Venky Soundararajan
Software Mentions: 6
Published: about 5 years ago

10.3897/BDJ.7.e31511

rMyCoPortal - an R package to interface with the Mycology Collections Portal
Cited by: 3
Author(s): Franz‐Sebastian Krah, Scott T. Bates, Andrew N. Miller
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2018.00599

Landscape- and Local-Scale Actions Are Essential to Conserve Regional Macrophyte Biodiversity
Cited by: 4
Author(s): Munemitsu Akasaka, Shinsuke Higuchi, Noriko Takamura
Software Mentions: 6
Published: about 8 years ago

10.1186/s13287-020-01983-2

IRF-1 expressed in the inner cell mass of the porcine early blastocyst enhances the pluripotency of induced pluripotent stem cells
Cited by: 8
Author(s): Bingbo Shi, Dengfeng Gao, Zhong Liu, Minglei Zhi, Xiaogang Weng, Junjun Xu, Junhong Li, Xuguang Du, Yanli Xin, Jie Gao, Qianqian Zhu, Suying Cao, Liu Z
Software Mentions: 6
Published: over 5 years ago

10.1007/s00604-018-3195-6

A smartphone readout system for gold nanoparticle-based lateral flow assays: application to monitoring of digoxigenin
Cited by: 46
Author(s): Christoph Ruppert, Navneet Phogat, Stefan Laufer, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 6
Published: over 7 years ago

10.1186/s12885-020-6702-1

Identification of immune cells and mRNA associated with prognosis of gastric cancer
Cited by: 35
Author(s): Mingming Wang, Zedong Li, Pei Yu, Jianyu Fang, Tao Fang, Jiajia Wu, Jun Zhou
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87143-9

Stock delineation of striped snakehead, Channa striata using multivariate generalised linear models with otolith shape and chemistry data
Cited by: 3
Author(s): Sanaullah Khan, Hayden T. Schilling, Mohammad Afzal Khan, Devendra Kumar Patel, Ben Maslen, Kaish Miyan
Software Mentions: 6
Published: about 5 years ago

10.12688/f1000research.27169.2

Examining implicit beliefs in a replication attempt of a time-reversed priming task
Cited by: 0
Author(s): Marilyn Schlitz, Arnaud Delorme
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/3827125

A New Method to Test Molluscicides against the Philippine Schistosomiasis Snail Vectors
Cited by: 1
Author(s): Darwin C. Gomez, Neil Anacta
Software Mentions: 6
Published: over 6 years ago

10.1093/gigascience/giaa116

The Dynamic Proteome of Oligodendrocyte Lineage Differentiation Features Planar Cell Polarity and Macroautophagy Pathways
Cited by: 8
Author(s): Paria Pooyan, Razieh Karamzadeh, Mehdi Mirzaei, Anna Meyfour, Ardeshir Amirkhan, Yunqi Wu, Vivek Gupta, Hossein Baharvand, Mohammad Javan, Ghasem Hosseini Salekdeh
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.101264

Machine learning for predicting lifespan-extending chemical compounds
Cited by: 32
Author(s): Diogo Barardo, Danielle Newby, Daniel Thornton, Taravat Ghafourian, João Pedro de Magalhães, Alex A. Freitas
Software Mentions: 6
Published: almost 9 years ago

10.1007/s00248-019-01434-3

Feeding Honeybee Colonies with Honeybee-Specific Lactic Acid Bacteria (Hbs-LAB) Does Not Affect Colony-Level Hbs-LAB Composition or Paenibacillus larvae Spore Levels, Although American Foulbrood Affected Colonies Harbor a More Diverse Hbs-LAB Community
Cited by: 14
Author(s): Sepideh Lamei, Jörg G. Stephan, Bo Nilson, Sander Sieuwerts, Kristian Riesbeck, Joachim Rodrigues De Miranda, Eva Forsgren
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmolb.2021.619110

Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0237272

Passenger-surface microbiome interactions in the subway of Mexico City
Cited by: 10
Author(s): Daniela Vargas-Robles, Carolina Gonzalez-Cedillo, Apolinar M. Hernández, Luis David Alcaraz, Mariana Peimbert
Software Mentions: 6
Published: almost 6 years ago

10.3390/s19204544

Semi-Automated Data Analysis for Ion-Selective Electrodes and Arrays Using the R Package ISEtools
Cited by: 3
Author(s): Peter W. Dillingham, Basim S. O. Alsaedi, Aleksandar Radu, Christina M. McGraw
Software Mentions: 6
Published: over 6 years ago

10.3390/insects10110388

Transgenic Winter Wheat Expressing the Sucrose Transporter HvSUT1 from Barley does not Affect Aphid Performance
Cited by: 4
Author(s): Yan Yang, Stefanie Kloos, Isabel Mora-Ramírez, Jörg Romeis, Susanne Brunner, Yunhe Li, Michael Meissle
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-81506-y

Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images
Cited by: 25
Author(s): Rikiya Yamashita, Long Jin, Atif Saleem, Daniel L. Rubin, Jeanne Shen
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms20164037

Consistent Biomarkers and Related Pathogenesis Underlying Asthma Revealed by Systems Biology Approach
Cited by: 18
Author(s): Xiner Nie, Jinyi Wei, Youjin Hao, Jingxin Tao, Yinghong Li, Mingwei Liu, Bo-Ying Xu, Bo Li
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0032724

Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing
Cited by: 33
Author(s): Joern Toedling, Nicolas Servant, Constance Ciaudo, Laurent Farinelli, Olivier Voinnet, Edith Heard, Emmanuel Barillot
Software Mentions: 6
Published: over 14 years ago

10.15252/msb.20156520

Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children
Cited by: 93
Author(s): Tobias Bauer, Saskia Trump, Naveed Ishaque, Loreen Thürmann, Lei Gu, Mario Bauer, Matthias Bieg, Zuguang Gu, Dieter Weichenhan, Jan‐Philipp Mallm, Stefan Röder, Gunda Herberth, Eiko Takada, Oliver Mücke, Marcus Winter, Kristin M. Junge, Konrad Grützmann, Ulrike Rolle-Kampczyk, Qi Wang, Christian Lawerenz, Michael Borte, Tobias Polte, Matthias Schlesner, Michaela Schanné, Stefan Wiemann, Christina Geörg, Hendrik G. Stunnenberg, Christoph Plass, Karsten Rippe, Junichiro Mizuguchi, Carl Herrmann, Roland Eils, Irina Lehmann
Software Mentions: 6
Published: over 10 years ago

10.3389/fpls.2021.695701

Effects of Prohydrojasmon on the Number of Infesting Herbivores and Biomass of Field-Grown Japanese Radish Plants
Cited by: 2
Author(s): Kengo Yoshida, Masayoshi Uefune, Rika Ozawa, Hiroshi Abe, Yuka Okemoto, Kinuyo Yoneya, Junji Takabayashi
Software Mentions: 6
Published: almost 5 years ago

10.1080/21655979.2020.1840731

Bioinformatics analysis to screen key prognostic genes in the breast cancer tumor microenvironment
Cited by: 9
Author(s): Qian Ye, Xiaofei Han, Zhengsheng Wu
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9051104

Biogeographic Role of the Kuroshio Current Intrusion in the Microzooplankton Community in the Boundary Zone of the Northern South China Sea
Cited by: 6
Author(s): Ping Sun, Silu Zhang, Ying Wang, Bangqin Huang
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-70535-8

Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection
Cited by: 16
Author(s): Alena M. Bubeck, Lena C. Preiss, Anna Jung, Elisabeth Dörner, Daniel Podlesny, Marija Kulis, Cynthia Maddox, Cesar Arze, Christian Zörb, Nikolaus Merkt, W. Florian Fricke
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0219507

Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne
Cited by: 5
Author(s): Mathula Thangarajh, Aiping Zhang, Kirandeep Gill, Habtom W. Ressom, Zhenzhi Li, Rency S. Varghese, Eric P. Hoffman, Kanneboyina Nagaraju, Yetrib Hathout, Simina M. Boca
Software Mentions: 6
Published: almost 7 years ago

10.3390/ani10081267

Factors Affecting Canine Obesity Seem to Be Independent of the Economic Status of the Country—A Survey on Hungarian Companion Dogs
Cited by: 6
Author(s): Torda Orsolya Julianna, Kata Vékony, Junó Vanda Katalin, Péter Pongrácz
Software Mentions: 6
Published: almost 6 years ago

10.3390/insects12030222

The Potential Global Distribution of Sirex juvencus (Hymenoptera: Siricidae) under Near Current and Future Climatic Conditions as Predicted by the Maximum Entropy Model
Cited by: 8
Author(s): Tai Gao, Juan Shi
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.33953

Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins
Cited by: 84
Author(s): Nitzan Koppel, Jordan E. Bisanz, Maria-Eirini Pandelia, Peter J. Turnbaugh, Emily P. Balskus
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0160716

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET
Cited by: 59
Author(s): Antonino Ingargiola, Eitan Lerner, SangYoon Chung, Shimon Weiss, Xavier Michalet
Software Mentions: 6
Published: almost 10 years ago

10.1016/j.lanepe.2021.100103

Impact of the COVID-19 pandemic and associated non-pharmaceutical interventions on other notifiable infectious diseases in Germany: An analysis of national surveillance data during week 1–2016 – week 32–2020
Cited by: 86
Author(s): Alexander Ullrich, Madlen Schranz, Ute Rexroth, Osamah Hamouda, Lars Schaade, Michaela Diercke, T. Sonia Boender
Software Mentions: 6
Published: about 5 years ago

10.1186/s40364-021-00292-x

The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinoma
Cited by: 13
Author(s): Chi T. Viet, Gary Yu, Kesava Asam, Carissa M. Thomas, Angela J. Yoon, Yan Chen Wongworawat, Mina Haghighiabyaneh, Courtney A. Kilkuts, Caitlyn M. McGue, Marcus Couey, Nicholas Callahan, Coleen Doan, Paul C. Walker, Khanh K. Nguyen, Stephanie C. Kidd, Steve C. Lee, Anupama Grandhi, Allen Cheng, Ashish Patel, Elizabeth Philipone, Olivia L. Ricks, Clint Allen, Bradley E. Aouizerat
Software Mentions: 6
Published: about 5 years ago

10.1186/s12862-020-01679-4

Multi-model seascape genomics identifies distinct environmental drivers of selection among sympatric marine species
Cited by: 9
Author(s): Erica S. Nielsen, Romina Henriques, Maria Beger, Robert J. Toonen, Sophie von der Heyden
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pcbi.1008372

Reduction in social learning and increased policy uncertainty about harmful intent is associated with pre-existing paranoid beliefs: Evidence from modelling a modified serial dictator game
Cited by: 13
Author(s): Joseph M Barnby, Vaughan Bell, Mitul A. Mehta, Michael Moutoussis
Software Mentions: 6
Published: over 5 years ago

10.3390/metabo11060356

Plasma Metabolites, Productive Performance and Rumen Volatile Fatty Acid Profiles of Northern Australian Bos indicus Steers Supplemented with Desmanthus and Lucerne
Cited by: 4
Author(s): Bénédicte Suybeng, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2016.00183

Large Scale Gene Expression Meta-Analysis Reveals Tissue-Specific, Sex-Biased Gene Expression in Humans
Cited by: 78
Author(s): Benjamin Mayne, Tina Bianco‐Miotto, Sam Buckberry, James Breen, Vicki L. Clifton, Cheryl Shoubridge, Claire T. Roberts
Software Mentions: 6
Published: over 9 years ago

10.1186/s12879-020-05598-z

Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfiler
Cited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0086536

Dual Targeting of MEK and PI3K Pathways Attenuates Established and Progressive Pulmonary Fibrosis
Cited by: 22
Author(s): Satish K. Madala, Ramakrishna Edukulla, Mukta Phatak, Stephanie Schmidt, Cynthia Davidson, Thomas H. Acciani, Thomas R. Korfhagen, Mario Medvedovic, Timothy D. Le Cras, Kimberly Wagner, William D. Hardie
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0187142

Spatial-temporal dynamics of neotropical velvet ant (Hymenoptera: Mutillidae) communities along a forest-savanna gradient
Cited by: 2
Author(s): Júlio Miguel Alvarenga, Cecília Rodrigues Vieira, Leandro Braga Godinho, Pedro Henrique Campelo, James P. Pitts, Guarino Rinaldi Colli
Software Mentions: 6
Published: over 8 years ago

10.3389/fcvm.2020.580573

Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network Analysis
Cited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0240010

Framing COVID-19: How we conceptualize and discuss the pandemic on Twitter
Cited by: 135
Author(s): Philipp Wicke, Marianna Bolognesi
Software Mentions: 6
Published: almost 6 years ago

10.1155/2020/2719739

Development of an Immune Infiltration-Related Eight-Gene Prognostic Signature in Colorectal Cancer Microenvironment
Cited by: 15
Author(s): Beilei Wu, Lijun Tao, Daping Yang, Wei Li, Hongbo Xu, Qianggui He
Software Mentions: 6
Published: almost 6 years ago

10.1038/srep26136

SOX7 co-regulates Wnt/β-catenin signaling with Axin-2: both expressed at low levels in breast cancer
Cited by: 25
Author(s): Huidi Liu, Emilio Mastriani, Zi-Qiao Yan, Shuai Yin, Zheng Zeng, Hong Wang, Qinghai Li, Hongyu Liu, Xiaoyu Wang, Hongchu Bao, Yujie Zhou, Junjie Kou, Dongsheng Li, Ting Li, Jianrui Liu, Yongfang Liu, Lin Yin, Li Qiu, Liling Gong, Shulin Liu
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.103626

A novel hypoxic tumor microenvironment signature for predicting the survival, progression, immune responsiveness and chemoresistance of glioblastoma: a multi-omic study
Cited by: 6
Author(s): Zihao Wang, Lu Gao, Xiaopeng Guo, Yaning Wang, Yu Wang, Wenbin Ma, Yi Guo, Bing Xing
Software Mentions: 6
Published: almost 6 years ago

10.3390/brainsci10080542

Reduced Attentional Control in Older Adults Leads to Deficits in Flexible Prioritization of Visual Working Memory
Cited by: 4
Author(s): Sarah Henderson, Holly Lockhart, Emily E. Davis, Stephen M. Emrich, Karen L. Campbell
Software Mentions: 6
Published: almost 6 years ago

10.1002/1878-0261.12707

Classification of diffuse lower‐grade glioma based on immunological profiling
Cited by: 40
Author(s): Fan Wu, Zhiliang Wang, Kuan‐Yu Wang, Guanzhang Li, Rui‐Chao Chai, Yuqing Liu, Haiyan Jiang, You Zhai, Yuemei Feng, Zheng Zhao, Wei Zhang
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.3592

Evolution of a complex phenotype with biphasic ontogeny: Contribution of development versus function and climatic variation to skull modularity in toads
Cited by: 12
Author(s): Monique Nouailhetas Simon, Gabriel Marroig
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-86100-w

Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
Cited by: 11
Author(s): Andrew G. Farrer, Sterling L. Wright, Emily Skelly, Raphael Eisenhofer, Keith Dobney, Laura S. Weyrich
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.5819

Evolution of sexually dimorphic pheromone profiles coincides with increased number of male‐specific chemosensory organs in <i>Drosophila prolongata</i>
Cited by: 12
Author(s): Yige Luo, Yunwei Zhang, Jean‐Pierre Farine, Jean‐François Ferveur, Santiago R. Ramírez, Artyom Kopp
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-021-01880-z

Radiating pain: venom has contributed to the diversification of the largest radiations of vertebrate and invertebrate animals
Cited by: 3
Author(s): Kevin Arbuckle, Richard J. Harris
Software Mentions: 6
Published: almost 5 years ago

10.3389/fcell.2021.724837

Integrative Analysis of m6A Regulator-Mediated RNA Methylation Modification Patterns and Immune Characteristics in Lupus Nephritis
Cited by: 14
Author(s): Huanhuan Zhao, Shaokang Pan, Jiayu Duan, Fengxun Liu, Guangpu Li, Dongwei Li, Zhangsuo Liu
Software Mentions: 6
Published: almost 5 years ago

10.3390/foods10071543

Comparative Study of Several Machine Learning Algorithms for Classification of Unifloral Honeys
Cited by: 10
Author(s): Fernando Mateo, Andrea Tarazona, Eva M. Mateo
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyt.2021.716722

Transcriptomics Analysis Reveals Shared Pathways in Peripheral Blood Mononuclear Cells and Brain Tissues of Patients With Schizophrenia
Cited by: 6
Author(s): Xuemian Song, Yiyun Liu, Juncai Pu, Siwen Gui, Xiaogang Zhong, Xiaopeng Chen, Weiyi Chen, Xiang Chen, Yue Chen, Haiyang Wang, Ke Cheng, Libo Zhao, Peng Xie
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13071-020-04098-y

Rats as potential reservoirs for neglected zoonotic Bartonella species in Flanders, Belgium
Cited by: 7
Author(s): Maria Krügel, Martin Pfeffer, Nina Król, Christian Imholt, Kristof Baert, Rainer G. Ulrich, Anna Obiegala
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-89938-2

Improved methods for RNAseq-based alternative splicing analysis
Cited by: 20
Author(s): Rebecca F. Halperin, Apurva M. Hegde, Jessica D. Lang, Elizabeth A. Raupach, Christophe Legendre, Winnie S. Liang, Patricia LoRusso, Aleksandar Sekulić, Jeffrey A. Sosman, Jeffrey M. Trent, Sampathkumar Rangasamy, Patrick Pirrotte, Nicholas J. Schork
Software Mentions: 6
Published: about 5 years ago

10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41598-019-56235-y

FABP4 and MMP9 levels identified as predictive factors for poor prognosis in patients with nonalcoholic fatty liver using data mining approaches and gene expression analysis
Cited by: 32
Author(s): Audrey Coilly, Christophe Desterke, Catherine Guettier, Didier Samuel, Franck Chiappini
Software Mentions: 6
Published: over 6 years ago

10.1080/22221751.2021.1942228

Single-cell immune checkpoint landscape of PBMCs stimulated with <i>Candida albicans</i>
Cited by: 8
Author(s): Wei‐Wei Deng, Zhen Su, Panpan Liang, Yubo Ma, Yufang Liu, Kai Zhang, Yi Zhang, Ting Liang, Jinyan Shao, X. Liu, Wenling Han, Ruoyu Li
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0241848

Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle)
Cited by: 3
Author(s): Hyo Jun Lee, Young Jin Chung, Sungbong Jang, Dongil Seo, Hak Kyo Lee, Duhak Yoon, Dajeong Lim, Seung Hwan Lee
Software Mentions: 6
Published: over 5 years ago

10.1093/bioinformatics/btz855

Improved linking of motifs to their TFs using domain information
Cited by: 1
Author(s): Nina Baumgarten, Florian Schmidt, Marcel H. Schulz
Software Mentions: 6
Published: over 6 years ago

10.3389/fcell.2021.644220

Prognostic Signatures of Metabolic Genes and Metabolism-Related Long Non-coding RNAs Accurately Predict Overall Survival for Osteosarcoma Patients
Cited by: 8
Author(s): Chang Gong, Rong Tang, Yawei Shi, Liu Tai-cong, Kaisheng Zhou, Nan Wu, Haihong Zhang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0097379

Direct Sequencing from the Minimal Number of DNA Molecules Needed to Fill a 454 Picotiterplate
Cited by: 12
Author(s): Mária Džunková, Marc García-Garcerá, Llúcia Martínez-Priego, Giussepe D’Auria, Francesc Calafell, Andrés Moya
Software Mentions: 6
Published: about 12 years ago

10.1186/s12935-021-02049-w

Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinoma
Cited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: almost 5 years ago

10.3389/fcell.2021.646774

CRISPR-cas9 Screening Identified Lethal Genes Enriched in Cell Cycle Pathway and of Prognosis Significance in Breast Cancer
Cited by: 6
Author(s): Xi Sun, Zheng Wang, Xiaosong Chen, Kunwei Shen
Software Mentions: 6
Published: over 5 years ago

10.3390/md19070357

Microalgae as Sustainable Bio-Factories of Healthy Lipids: Evaluating Fatty Acid Content and Antioxidant Activity
Cited by: 47
Author(s): Tiago Conde, Bruno Miguel Neves, Daniela Couto, Tânia Melo, Margarida Costa, Joana Silva, Pedro Domingues, M. Rosário M. Domingues
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1008569

Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Cited by: 16
Author(s): Andreas Tjärnberg, Omar Mahmood, Christopher Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel Christiaen, Richard Bonneau
Software Mentions: 6
Published: over 5 years ago

10.3389/fphys.2021.648019

Non-cross Bridge Viscoelastic Elements Contribute to Muscle Force and Work During Stretch-Shortening Cycles: Evidence From Whole Muscles and Permeabilized Fibers
Cited by: 8
Author(s): Anthony L. Hessel, Jenna A. Monroy, Kiisa C. Nishikawa
Software Mentions: 6
Published: over 5 years ago

10.1093/annweh/wxz095

Accelerometer-Measured Physical Activity at Work and Need for Recovery: A Compositional Analysis of Cross-sectional Data
Cited by: 9
Author(s): Matthew L Stevens, Patrick Crowley, Charlotte Lund Rasmussen, David Hallman, Ole Steen Mortensen, Clas‐Håkan Nygård, Andreas Holtermann
Software Mentions: 6
Published: over 6 years ago

10.1186/1752-0509-8-17

Identification of core T cell network based on immunome interactome
Cited by: 4
Author(s): Gabriel Teku, Csaba Ortutay, Mauno Vihinen
Software Mentions: 6
Published: over 12 years ago