Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bfgp/ely003

https://doi.org/10.1093/bfgp/ely003

The impact of single-cell RNA sequencing on understanding the functional organization of the immune system

Cited by: 15
Author(s): Péter Végh, Muzlifah Haniffa
Published: over 6 years ago

Software Mentions 7

cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: salmon
A simple metric collector with alerts.
Papers that mentioned: 36
pypi: scTDA
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Papers that mentioned: 4