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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: scTDA

https://packages.ecosyste.ms/registries/pypi.org/packages/scTDA

An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
2 versions
Latest release: about 8 years ago
9 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: Cámara Lab (organization)
The Cámara lab focuses on the development and application of innovative computational approaches to the study of cellular heterogeneity and its role in disease. Academic
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +8 Science terms in README
    4 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -25 Non-science indicators
    1 non-scientific terms found
Very Likely Science (85)

Papers Mentioning scTDA 4

10.1093/bfgp/ely003
The impact of single-cell RNA sequencing on understanding the functional organization of the immune system
Cited by: 15
Author(s): Péter Végh, Muzlifah Haniffa
Software Mentions: 7
Published: over 7 years ago
10.1016/j.gpb.2018.07.007
Deciphering Brain Complexity Using Single-cell Sequencing
Cited by: 50
Author(s): Quanhua Mu, Yiyun Chen, Jiguang Wang
Software Mentions: 7
Published: almost 6 years ago
10.1002/cam4.2996
Molecular natural history of breast cancer: Leveraging transcriptomics to predict breast cancer progression and aggressiveness
Cited by: 6
Author(s): Daniel Cook, Jonatan Kallus, Rebecka Jörnsten, Jens Nielsen
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1007644
Inferring TF activation order in time series scRNA-Seq studies
Cited by: 9
Author(s): Chieh Hubert Lin, Jun Ding, Ziv Bar‐Joseph
Software Mentions: 1
Published: over 5 years ago