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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.ppat.1008589

https://doi.org/10.1371/journal.ppat.1008589

High-throughput sequencing analysis of a “hit and run” cell and animal model of KSHV tumorigenesis

Cited by: 12
Author(s): Julián Naipauer, Daria Salyakina, Guy Journo, Santas Rosario, Siôn L. Williams, Martı́n C. Abba, Meir Shamay, Enrique A. Mesri
Published: about 5 years ago

Software Mentions 6

bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
Very Likely Science (90)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: mutations
Encapsulate your business logic in command classes.
Papers that mentioned: 1
Likely Science (40)
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
Very Likely Science (90)