10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: over 6 years ago

10.1186/s13059-018-1438-9

UMI-count modeling and differential expression analysis for single-cell RNA sequencing
Cited by: 80
Author(s): Wenan Chen, Yán Li, John Easton, David Finkelstein, Gang Wu, Xiang Chen
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-021-95302-1

The implications of lag times between nitrate leaching losses and riverine loads for water quality policy
Cited by: 12
Author(s): R. W. McDowell, Zachary P. Simpson, Anne-Gäelle Ausseil, Z. Etheridge, Richard M. Law
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41419-020-2477-1

Deficiency in the autophagy modulator Dram1 exacerbates pyroptotic cell death of Mycobacteria-infected macrophages
Cited by: 22
Author(s): Rui Zhang, Mónica Varela, Gabriel Forn-Cuní, Vincenzo Torraca, Michiel van der Vaart, Annemarie H. Meijer
Software Mentions: 7
Published: about 6 years ago

10.3389/fonc.2021.674394

Comprehensive Analysis of Cyclin Family Gene Expression in Colon Cancer
Cited by: 12
Author(s): Jieling Li, Liyuan Zhou, Ying Liu, Lingzhi Yang, Dayi Jiang, Kuan Li, Shouqi Xie, Wang Xiao, Shaoxiang Wang
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0187735

Transcriptome profile of lung dendritic cells after in vitro porcine reproductive and respiratory syndrome virus (PRRSV) infection
Cited by: 16
Author(s): Maren Pröll, Christiane Neuhoff, K. Schellander, Muhammad Jasim Uddin, Mehmet Ulaş Çınar, Sudeep Sahadevan, Xuecheng Qu, M. S. Islam, Mikhaël Poirier, Marcel A. Müller, Christian Drosten, Dawit Tesfaye, Ernst Tholen, Christine Große‐Brinkhaus
Software Mentions: 7
Published: over 8 years ago

10.1002/cti2.1127

High‐dimensional analyses reveal a distinct role of T‐cell subsets in the immune microenvironment of gastric cancer
Cited by: 18
Author(s): Minyu Wang, Yen-Yu Huang, Joseph C Kong, Yu Sun, Daniela Tantalo, Han Xian Aw Yeang, Le Ying, Feng Yan, Dakang Xu, Heloise M. Halse, Natasha Di Costanzo, Ian Gordon, Catherine Mitchell, Laura K. Mackay, Rita A. Busuttil, Paul J. Neeson, Alex Boussioutas
Software Mentions: 7
Published: over 6 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
Cited by: 23
Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: over 5 years ago

10.1186/s13742-015-0077-2

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Cited by: 83
Author(s): Georgios A. Pavlopoulos, Dimitris Malliarakis, Nikolas Papanikolaou, Θεοδόσιος Θεοδοσίου, Anton J. Enright, Ioannis Iliopoulos
Software Mentions: 7
Published: almost 11 years ago

10.1038/s41598-020-74282-8

Monitoring elasmobranch assemblages in a data-poor country from the Eastern Tropical Pacific using baited remote underwater video stations
Cited by: 13
Author(s): Mario Espinoza, Tatiana Araya‐Arce, Isaac Chaves-Zamora, Isaac Chinchilla, Marta Cambra
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2021.637115

The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype
Cited by: 9
Author(s): Tatiana Arias, Chad E. Niederhuth, Paula McSteen, J. Chris Pires
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.69975

Notch-induced endoplasmic reticulum-associated degradation governs mouse thymocyte β−selection
Cited by: 8
Author(s): Xia Liu, Jingjing Yu, Longyong Xu, Katharine Umphred-Wilson, Fanglue Peng, Yao Ding, Brendan M Barton, Xiangdong Lv, Michael Y Zhao, Shengyi Sun, Yuning Hong, Ling Qi, Stanley Adoro, Xi Chen
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0079729

DCGL v2.0: An R Package for Unveiling Differential Regulation from Differential Co-expression
Cited by: 76
Author(s): Jing Yang, Hui Yu, Baohong Liu, Zhongming Zhao, Lei Liu, Liangxiao Ma, Yixue Li, Yuanyuan Li
Software Mentions: 7
Published: over 12 years ago

10.1016/j.cell.2019.09.035

Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity
Cited by: 322
Author(s): Chrysothemis C. Brown, Herman Gudjonson, Yuri Pritykin, Deeksha Deep, Vincent Philippe Lavallée, Alejandra Mendoza, Rachel M. Fromme, Linas Mažutis, Charlotte E. Ariyan, Christina Leslie, Dana Pe’er, Alexander Y. Rudensky
Software Mentions: 7
Published: over 6 years ago

10.3389/fonc.2020.622251

Screening and Identification of Four Prognostic Genes Related to Immune Infiltration and G-Protein Coupled Receptors Pathway in Lung Adenocarcinoma
Cited by: 3
Author(s): Yan Wang, Longqing Qiu, Yu Chen, Xia Zhang, Yang Peng, Feng Xu
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: over 8 years ago

10.1007/s00122-021-03834-x

Using probabilistic genotypes in linkage analysis of polyploids
Cited by: 2
Author(s): Yanlin Liao, Roeland E. Voorrips, Peter M. Bourke, Giorgio Tumino, Paul Arens, R.G.F. Visser, M.J.M. Smulders, Chris Maliepaard
Software Mentions: 7
Published: about 5 years ago

10.1186/1471-2164-14-445

The Saccharomyces cerevisiae transcriptome as a mirror of phytochemical variation in complex extracts of Equisetum arvense from America, China, Europe and India
Cited by: 20
Author(s): R. Kimberley Cook, James R. Hennell, Samiuela Lee, Cheang Khoo, Maria Carles, Vincent J. Higgins, Suresh Govindaraghavan, Nikolaus J. Sucher
Software Mentions: 7
Published: almost 13 years ago

10.1111/jcmm.15877

RAD51AP1 promotes progression of ovarian cancer via TGF‐β/Smad signalling pathway
Cited by: 17
Author(s): Hongyu Zhao, Yan Gao, Qi Chen, Jie Li, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-017-4167-7

SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles
Cited by: 30
Author(s): David Lopez, Dennis Montoya, Michael Ambrose, Larry Lam, Leah Briscoe, Claire Adams, Robert L. Modlin, Matteo Pellegrini
Software Mentions: 7
Published: over 8 years ago

10.3389/fonc.2020.01409

Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade Glioma
Cited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: almost 6 years ago

10.7554/eLife.13503

A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types
Cited by: 50
Author(s): Yasuyuki Shima, Ken Sugino, Chris M. Hempel, Masami Shima, Praveen Taneja, James B. Bullis, Sonam Mehta, Carlos Lois, Sacha B. Nelson
Software Mentions: 7
Published: over 10 years ago

10.3390/genes11091107

Integrated Analysis of Gene Expression, SNP, InDel, and CNV Identifies Candidate Avirulence Genes in Australian Isolates of the Wheat Leaf Rust Pathogen Puccinia triticina
Cited by: 5
Author(s): Long Song, Jing Qin Wu, Chongmei Dong, Robert Park
Software Mentions: 7
Published: almost 6 years ago

10.1016/j.psj.2021.101300

The relationship between gait and automated recordings of individual broiler activity levels
Cited by: 7
Author(s): M. van der Sluis, E.D. Ellen, B. de Klerk, T.B. Rodenburg, Y. de Haas
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pgen.1009763

Deficiency of Polη in Saccharomyces cerevisiae reveals the impact of transcription on damage-induced cohesion
Cited by: 0
Author(s): Pei-Shang Wu, Jan Grosser, Donald P. Cameron, Laura Baranello, Lena Ström
Software Mentions: 7
Published: almost 5 years ago

10.7554/eLife.53281

Feedback inhibition and its control in an insect olfactory circuit
Cited by: 8
Author(s): Subhasis Ray, Zane Aldworth, Mark Stopfer
Software Mentions: 7
Published: over 6 years ago

10.1016/j.isci.2021.102870

Single paternal dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance
Cited by: 14
Author(s): Katharina Gapp, Guillermo E. Parada, Fridolin Groß, Alberto Corcoba, Jasmine Kaur, Evelyn Grau, Martin Hemberg, Johannes Bohacek, Eric A. Miska
Software Mentions: 7
Published: almost 5 years ago

10.7150/thno.44306

Single-cell Transcriptome Profiling reveals Dermal and Epithelial cell fate decisions during Embryonic Hair Follicle Development
Cited by: 39
Author(s): Wei Ge, Shao-Jing Tan, Shan-He Wang, Lan Li, Xiaowen Sun, Wei Shen, Xin Wang
Software Mentions: 7
Published: over 6 years ago

10.1093/gigascience/giy023

The Scientific Filesystem
Cited by: 1
Author(s): Vanessa Sochat
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.2851

Community assembly in <i>Nothobranchius</i> annual fishes: Nested patterns, environmental niche and biogeographic history
Cited by: 20
Author(s): Martin Reichard, Michal Janáč, Matěj Polačik, Radim Blažek, Milan Vrtílek
Software Mentions: 7
Published: over 9 years ago

10.1186/s13059-017-1197-z

H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity
Cited by: 66
Author(s): Yue Zhou, Francisco J. Romero–Campero, Ángeles Gómez-Zambrano, Franziska Turck, Myriam Calonje
Software Mentions: 7
Published: about 9 years ago

10.7554/eLife.52511

ERK3/MAPK6 controls IL-8 production and chemotaxis
Cited by: 23
Author(s): Katarzyna Bogucka, Malvika Pompaiah, Fédérico Marini, Harald Binder, Gregory S. Harms, Manuel Kaulich, Matthias Klein, Christian Michel, Markus P. Radsak, Sebastian Rosigkeit, Peter Grimminger, Hansjörg Schild, Krishnaraj Rajalingam
Software Mentions: 7
Published: about 6 years ago

10.1186/s13321-020-00481-0

ChemSpectra: a web-based spectra editor for analytical data
Cited by: 8
Author(s): Yu‐Chieh Huang, Pierre Tremouilhac, An Nguyẽ̂n, Nicole Jung, Stefan Bräse
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.596318

Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis
Cited by: 40
Author(s): Siwen Zhang, Zhenhao Liu, Dan Wu, Lanming Chen, Lu Xie
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-019-2990-3

Analysis of networks of host proteins in the early time points following HIV transduction
Cited by: 8
Author(s): Éva Csősz, Ferenc Tóth, Mohamed Mahdi, George Tsaprailis, Miklós Emri, József Tözsér
Software Mentions: 7
Published: almost 7 years ago

10.3390/healthcare9030268

Measuring the Response Performance of U.S. States against COVID-19 Using an Integrated DEA, CART, and Logistic Regression Approach
Cited by: 11
Author(s): Yawei Xu, Yong Shin Park, Ju Dong Park
Software Mentions: 7
Published: over 5 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to <i>Clostridium difficile</i> Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: almost 9 years ago

10.1172/jci.insight.148035

Single-cell immunophenotyping of the skin lesion erythema migrans identifies IgM memory B cells
Cited by: 7
Author(s): Ruoyi Jiang, Hailong Meng, Khadir Raddassi, Ira Fleming, Kenneth B. Hoehn, Kenneth R. Dardick, Alexia A. Belperron, Ruth R. Montgomery, Alex K. Shalek, David A. Hafler, Steven H. Kleinstein, Linda K. Bockenstedt
Software Mentions: 7
Published: about 5 years ago

10.3390/medicina55060269

A Robust Approach for Identification of Cancer Biomarkers and Candidate Drugs
Cited by: 10
Author(s): Shahjaman, Rezanur Rahman, S. M. Shahinul Islam, Md. Nurul Haque Mollah
Software Mentions: 7
Published: about 7 years ago

10.3389/fonc.2021.618187

CCR4, CCR8, and P2RY14 as Prognostic Factors in Head and Neck Squamous Cell Carcinoma Are Involved in the Remodeling of the Tumor Microenvironment
Cited by: 9
Author(s): Liangliang Meng, Xiaoxi He, Hong Qin, Bo Qiao, Xiao Zhang, Bin Wu, Xiaobo Zhang, Yingtian Wei, Jing Li, Zhaoxiang Ye, Yueyong Xiao
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-019-6155-6

A framework using topological pathways for deeper analysis of transcriptome data
Cited by: 0
Author(s): Yue Zhao, Stephanie Piekos, Tham H. Hoang, Dong-Guk Shin
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: over 5 years ago

10.1186/1471-2148-14-61

Introgressive hybridization and latitudinal admixture clines in North Atlantic eels
Cited by: 15
Author(s): Sébastien Wielgoss, Aude Gilabert, Axel Meyer, Thierry Wirth
Software Mentions: 7
Published: over 12 years ago

10.1002/ece3.7646

Many ways to make darker flies: Intra‐ and interspecific variation in <i>Drosophila</i> body pigmentation components
Cited by: 5
Author(s): Elvira Lafuente, Filipa Alves, Jessica G. King, Carolina M Peralta, Patrícia Beldade
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pcbi.1004925

PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies
Cited by: 23
Author(s): Wenchao Zhang, Xinbin Dai, Qishan Wang, Shizhong Xu, Patrick Xuechun Zhao
Software Mentions: 7
Published: about 10 years ago

10.7717/peerj.642

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse<i>Peromyscus eremicus</i>
Cited by: 34
Author(s): Matthew D. MacManes, Michael B. Eisen
Software Mentions: 7
Published: over 11 years ago

10.1002/ece3.6588

Investigating population‐scale allelic differential expression in wild populations of <i>Oithona similis</i> (Cyclopoida, Claus, 1866)
Cited by: 8
Author(s): Romuald Laso-Jadart, Kevin Sugier, Emmanuelle Petit, Karine Labadie, Pierre Peterlongo, Christophe Ambroise, Patrick Wincker, Jean‐Louis Jamet, Mohammed‐Amin Madoui
Software Mentions: 7
Published: almost 6 years ago

10.3390/molecules25153402

The Mineral Profile of Polish Beers by Fast Sequential Multielement HR CS FAAS Analysis and Its Correlation with Total Phenolic Content and Antioxidant Activity by Chemometric Methods
Cited by: 8
Author(s): Elżbieta Zambrzycka-Szelewa, Edyta Nalewajko-Sieliwoniuk, Mariusz Zaremba, Andrzej Bajguz, Beata Godlewska‐Żyłkiewicz
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.651593

An Immune-Related Long Non-Coding RNA Signature to Predict the Prognosis of Ewing’s Sarcoma Based on a Machine Learning Iterative Lasso Regression
Cited by: 4
Author(s): Enhui Ren, Yajun Deng, Wenhua Yuan, Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Qiqi Xie
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0220155

Functional shifts in bird communities from semi-natural oak forests to conifer plantations are not consistent across Europe
Cited by: 9
Author(s): Scott M. Pedley, Luc Barbaro, João L. Guilherme, Sandra Irwin, John O’Halloran, Vânia Proença, Martin J. P. Sullivan
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12940-020-00644-4

A family of partial-linear single-index models for analyzing complex environmental exposures with continuous, categorical, time-to-event, and longitudinal health outcomes
Cited by: 7
Author(s): Yuyan Wang, Yinxiang Wu, Melanie H. Jacobson, Myeonggyun Lee, Peng Jin, Leonardo Trasande, Mengling Liu
Software Mentions: 7
Published: almost 6 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: almost 8 years ago

10.3389/fimmu.2019.00488

The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)2D3 Induces Super-Enhancers Bound by VDR
Cited by: 24
Author(s): Ming Lu, Bennet J McComish, Kathryn P. Burdon, Bruce Taylor, Heinrich Körner
Software Mentions: 7
Published: over 7 years ago

10.3389/fonc.2020.580263

A Prognostic Microenvironment-Related Immune Signature via ESTIMATE (PROMISE Model) Predicts Overall Survival of Patients With Glioma
Cited by: 23
Author(s): Huaide Qiu, Yongqiang Li, Shupeng Cheng, Jiahui Li, Chuan He, Jianan Li
Software Mentions: 7
Published: over 5 years ago

10.3389/fcell.2021.668810

Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma
Cited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2021.739768

m6A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
Cited by: 10
Author(s): Mengyu Sun, Meng Xie, Tongyue Zhang, Yijun Wang, Wenjie Huang, Limin Xia
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-54700-2

Murine xenograft bioreactors for human immunopeptidome discovery
Cited by: 8
Author(s): James Heather, Paisley T. Myers, Feng Shi, Mohammad Ovais Aziz‐Zanjani, Keira E. Mahoney, Matthew Perez, Benjamin Morin, Christine Brittsan, Jeffrey Shabanowitz, Donald F. Hunt, Mark Cobbold
Software Mentions: 7
Published: over 6 years ago

10.1098/rsos.200431

Make or break it: boundary conditions for integrating multiple elements in episodic memory
Cited by: 6
Author(s): Emma James, Gabrielle Ong, Lisa Henderson, Aidan J. Horner
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmolb.2021.665222

Identification of the m6A RNA Methylation Regulators WTAP as a Novel Prognostic Biomarker and Genomic Alterations in Cutaneous Melanoma
Cited by: 12
Author(s): Ziyi Feng, Ting Wang, Xin Su, Shu Guo
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pcbi.1009290

miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
Cited by: 23
Author(s): Ariel A. Hippen, Matías M. Falco, Lukas M. Weber, Erdoğan Pekcan Erkan, Kaiyang Zhang, Jennifer A. Doherty, Anna Vähärautio, Casey S. Greene, Stephanie C. Hicks
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12868-016-0283-6

25th Annual Computational Neuroscience Meeting: CNS-2016
Cited by: 71
Author(s): Tatyana O. Sharpee, Alain Destexhe, Mitsuo Kawato, Vladislav Sekulić, Frances K. Skinner, Daniel K. Wójcik, Chaitanya Chintaluri, Dorottya Cserpán, Zoltán Somogyvári, Jae Kyoung Kim, Zachary P. Kilpatrick, Matthew R. Bennett, Krešimir Josić, Irene Elices, David Arroyo, Rafael Levi, Francisco B. Rodríguez, Pablo Varona, Eunjin Hwang, Bowon Kim, Hio-Been Han, Tae Il Kim, James T Mckenna, Ritchie E. Brown, Robert W. McCarley, Jee Hyun Choi, James Rankin, Pamela Osborn Popp, John Rinzel, Alejandro Tabas, André Rupp, Emili Balaguer‐Ballester, Matias I. Maturana, David B. Grayden, Shaun L. Cloherty, Tatiana Kameneva, M. Ibbotson, Hamish Meffin, Veronika Koren, Timm Lochmann, Valentin Dragoi, Klaus Obermayer, Maria Psarrou, Maria J. Schilstra, Neil Davey, Benjamin Torben‐Nielsen, Volker Steuber, Huiwen Ju, Junsheng Yu, Michael L. Hines, Liang Chen, Yuguo Yu, Jimin Kim, Will Leahy, Eli Shlizerman, Justas Birgiolas, Richard C. Gerkin, Atthaphon Viriyopase, Raoul-Martin Memmesheimer, Stan Gielen, Yuri Dabaghian, Justin DeVito, Luca Perotti, Anmo J. Kim, Lisa M. Fenk, Cheng Cheng, Gaby Maimon, Chang Zhao, Yves F. Widmer, Simon G. Sprecher, Walter Senn, Geir Halnes, Tuomo Mäki‐Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll, Yasunori Yamada, Moira L. Steyn-Ross, D. Alistair Steyn-Ross, Jorge F. Mejías, John D. Murray, Henry Kennedy, Xiaojing Wang, Alexandra Kruscha, Jan Grewe, Jan Benda, Benjamin Lindner, Laurent Badel, Kazumi Ohta, Yoshiko Tsuchimoto, Hokto Kazama, B. Kahng, Nicoladie D. Tam, Luca Pollonini, George Zouridakis, Jaehyun Soh, DaeEun Kim, Minsu Yoo, Stéphanie Palmer, Viviana Culmone, Ingo Bojak, Andrea Ferrario, Robert Merrison-Hort, Roman Borisyuk, Chang Sub Kim, T. Tezuka, Pangyu Joo, Young-Ah Rho, Shawn D. Burton, G. Bard Ermentrout, Jaeseung Jeong, Nathaniel N. Urban, Petr Maršálek, Hoon-Hee Kim, Seok-hyun Moon, Dowon Lee, Sung-beom Lee, Ji-yong Lee, Yaroslav I. Molkov, Khaldoun C. Hamade, Wondimu Teka, William Barnett, Taegyo Kim, Sergey N. Markin, Ilya A. Rybak, Csaba Forró, Harald Dermutz, László Demkó, János Vörös, Andrey Babichev, Haiping Huang, Sergio Verduzco-Flores, Filipa Santos, Péter András, Christoph Metzner, Achim Schweikard, Bartosz Zurowski, James P. Roach, Leonard M. Sander, Michał Żochowski, Quinton M. Skilling, Nicolette Ognjanovski, Sara J. Aton, Shengjun Wang, Guang Ouyang, Jing Guang, Mingsha Zhang, K. Y. Michael Wong, Changsong Zhou, P. A. Robinson, Paula Sanz‐Leon, P.M. Drysdale, Felix Fung, Romesh Abeysuriya, Chris Rennie, Xuelong Zhao, Yoonsuck Choe, Huei-Fang Yang, Yuanyuan Mi, Xinhua Lin, Si Wu, Joscha Liedtke, Manuel Schottdorf, Fred Wolf, Yuichi Yamamura, Jeffery R. Wickens, Timothy Rumbell, Julia Ramsey, Amy Reyes, Danel Draguljić, Patrick R. Hof, Jennifer I. Luebke, Christina M. Weaver, Hu He, Yang Xu, Hailin Ma, Zhiheng Xu, Yuzhe Wang, Kwangyeol Baek, Laurel Morris, Prantik Kundu, Valerie Voon, Everton J. Agnes, Tim P. Vogels, William F Podlaski, Martin A. Giese, Pradeep Kuravi, Rufin Vogels, Alexander Seeholzer, Rajnish Ranjan, Tim P. Vogels, Joaquín J. Torres, Fabiano Baroni, Roberto Latorre, Bart Gips, Eric Lowet, Mark Roberts, Peter De Weerd, Ole Jensen, Jan van der Eerden, Abdorreza Goodarzinick, M. D. Niry, Alireza Valizadeh, Aref Pariz, Shervin S. Parsi, Julia M. Warburton, Lucia Marucci, Francesco Tamagnini, Jon Brown, Krasimira Tsaneva-Atanasova, Florence I. Kleberg, Jochen Triesch, Bahar Moezzi, Nicolangelo Iannella, Natalie Schaworonkow, Lukas Plogmacher, Mitchell R. Goldsworthy, Brenton Hordacre, Mark D. McDonnell, Michael C. Ridding, Martin Zapotocky, Daniel Šmít, Isabelle Dusart, Alain Trembleau, Sakyasingha Dasgupta, Isao Nishikawa, Kazuyuki Aihara, Taro Toyoizumi, Daniel Robb, Nick Mellen, Natalia Toporikova, Rongxiang Tang, Yi‐Yuan Tang, Guangsheng Liang, Seth Kiser, James H. Howard, Julia Goncharenko, Sergej O. Voronenko, Tosif Ahamed, Greg Stephens, Pierre Yger, Baptiste Lefebvre, Giulia Lia Beatrice Spampinato, Elric Esposito, Marcel Stimberg et Olivier Marre, Hansol Choi, Min‐Ho Song, SueYeon Chung, Dan D. Lee, Haim Sompolinsky, Ryan S. Phillips, Jeffrey C. Smith, Alexandra P. Chatzikalymniou, Katie Ferguson, N. Alex Cayco Gajic, Claudia Clopath, R. Angus Silver, Padraig Gleeson, Bóris Marin, Sadra Sadeh, Adrián Quintana, Matteo Carandini, Salvador Dura‐Bernal, William W. Lytton, Andrew Davison, Luozheng Li, Wenhao Zhang, Dahui Wang, Youngjo Song, Sol Park, Ilhwan Choi, Hee‐Sup Shin, Hannah Choi, Anitha Pasupathy, Eric Shea‐Brown, Dongsung Huh, Terrence J. Sejnowski, Simon Vogt, Arvind Kumar, Robert J. Schmidt, Stephen Van Wert, Steven J. Schiff, Richard Veale, Matthias Scheutz, Sang Wan Lee, Júlia V. Gallinaro, Stefan Rotter, Leonid L. Rubchinsky, Chung Ching Cheung, Shivakeshavan Ratnadurai‐Giridharan, Safura Rashid Shomali, Majid Nili Ahmadabadi, Hideaki Shimazaki, Seyyed Nader Rasuli, Xiaochen Zhao, Malte J. Rasch, Jens Wilting, Viola Priesemann, Anna Levina, Lucas Rudelt, Joseph T. Lizier, Richard E. Spinney, Mikail Rubinov, Michael Wibral, Ji Hyun Bak, Jonathan W. Pillow, Yuan Zaho, Il Park, J K Kang, Hae Jeong Park, Jaeson Jang, Se‐Bum Paik, Woochul Choi, Changju Lee, Min Song, Hyeonsu Lee, Youngjin Park, Ergin Yilmaz, Veli Baysal, Mahmut Özer, Daniel Saska, Thomas Nowotny, Ho Ka Chan, Alan Diamond, Christoph S. Herrmann, Micah M. Murray, Silvio Ionta, Axel Hutt, Jérémie Lefebvre, Philipp Weidel, Renato Duarte, Abigail Morrison, Jung H. Lee, Ramakrishnan Iyer, Ştefan Mihalaş, Christof Koch, Mihai A. Petrovici, Luziwei Leng, Oliver Breitwieser, David Stöckel, Ilja Bytschok, Roman Martel, Johannes Bill, Johannes Schemmel, K. Meier, Timothy B Esler, Anthony N. Burkitt, Robert R. Kerr, Bahman Tahayori, Max Nolte, Michael Reimann, Eilif Müller, Henry Markram, Antonio Parziale, Rosa Senatore, Angelo Marcelli, K. Skiker, Mounir Maouene, Samuel A. Neymotin, Alexandra H Seidenstein, Péter L. Lakatos, Terence D. Sanger, Rosemary J. Menzies, Campbell McLauchlan, Sacha J. van Albada, David J. Kedziora, Samuel A. Neymotin, Cliff C. Kerr, Benjamin A. Suter, Gordon M. Shepherd, Juhyoung Ryu, Sang-Hun Lee, Joonwon Lee, Hyang Jung Lee, Daeseob Lim, Jisung Wang, Heonsoo Lee, Nam Jung, Le Anh Quang, Seung Eun Maeng, Tae Ho Lee, Jae Woo Lee, Chang-Hyun Park, Sora Ahn, Jangsup Moon, Yun Seo Choi, Juhee Kim, Sang Beom Jun, Seungjun Lee, Hyang Woon Lee, Sumin Jo, Eunji Jun, Suin Yu, Felix Goetze, Pik‐Yin Lai, Seonghyun Kim, Jeehyun Kwag, Hyun Jae Jang, Marko Filipović, Ramón Reig, Ad Aertsen, Gilad Silberberg, Claudia Bachmann, Simone Buttler, Heidi I.L. Jacobs, Kim Dillen, Gereon R. Fink, Juraj Kukolja, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Steven J. Shea, Alex Koulakov, Jyotika Bahuguna, Tom Tetzlaff, Jeanette Hellgren Kotaleski, Tim Kunze, Andre D. H. Peterson, Thomas R. Knösche, Minjung Kim, Hojeong Kim, Ji Sung Park, Ji Won Yeon, Sung-Phil Kim, Jae-Hwan Kang, Chungho Lee, Andreas Spiegler, Spase Petkoski, Matias Palva, Viktor K. Jirsa, Maria Luisa Saggio, Silvan F. Siep, William C. Stacey, Christophe Bernar, Oh-Hyeon Choung, Yong Jeong, Lee Yong-IL, Su Hyun Kim, Mir Jeong, Jeungmin Lee, Jaehyung Kwon, Jerald D. Kralik, Jaehwan Jahng, Dong‐Uk Hwang, Sang-Min Park, Seong-Kyun Kim, Hyoungkyu Kim, Pyeong Soo Kim, Sangsup Yoon, Sewoong Lim, Choongseok Park, T. Miller, Katie N Clements, Sungwoo Ahn, Eoon Hye Ji, Fadi A. Issa, Jeonghun Baek, Shigeyuki Oba, Junichiro Yoshimoto, Kenji Doya, Shin Ishii, Thiago Mosqueiro, Martin F. Strube‐Bloss, Brian E. Smith, Ramón Huerta, Michal Hadrava, Jaroslav Hlinka, Hannah Bos, Moritz Helias, Charles M. Welzig, Zachary J. Harper, Won Sup Kim, In-Seob Shin, Hyeon‐Man Baek, Seung Kee Han, René Richter, Julien Vitay, Frederick Beuth, Fred H. Hamker, Kelly Toppin, Yixin Guo, Bruce Graham, Penelope J. Kale, Leonardo L Gollo, Merav Stern, L. F. Abbott, Leonid Fedorov, Martin A. Giese, Mohammad Hovaidi Ardestani, Mohammad Javad Faraji, Kerstin Preuschoff, Wulfram Gerstner, M.J. van Gendt, Jeroen J. Briaire, Randy K. Kalkman, J.H.M. Frijns, Won Hee Lee, Sophia Frangou, Ben D. Fulcher, Patricia H. P. Tran, Alex Fornito, S. Gliske, Eugene Lim, Katherine A. Holman, Christian G. Fink, Jinseop S. Kim, Shang Mu, Kevin L. Briggman, H. Sebastian Seung, Detlef Wegener, Lisa Bohnenkamp, Udo Ernst, Anna Devor, Anders M. Dale, Glenn Terje Lines, Andy Edwards, Aslak Tveito, Espen Hagen, Johanna Senk, Markus Diesmann, Maximilian Schmidt, Rembrandt Bakker, Kelly Shen, Gleb Bezgin, Claus-Christian Hilgetag, Sacha J. van Albada, Haoqi Sun, Olga Sourina, Guang-Bin Huang, Felix Klanner, Cornelia Denk, Katharina Glomb, Adrián Ponce‐Alvarez, Matthieu Gilson, Petra Ritter, Gustavo Deco, Maria A. G. Witek, Eric Clarke, Mads Hansen, Mikkel Wallentin, Morten L. Kringelbach, Peter Vuust, Guido Klingbeil, Erik De Schutter, Wei‐Liang Chen, Yunliang Zang, Sungho Hong, Akira Takashima, Criseida Zamora, Andrew R. Gallimore, Dennis Goldschmidt, Poramate Manoonpong, Philippa J. Karoly, Dean R. Freestone, Daniel Soundry, Levin Kuhlmann, Liam Paninski, Mark Cook, Jaejin Lee, Yonatan I. Fishman, Yale E. Cohen, James A. Roberts, Luca Cocchi, Yann Sweeney, Mi Kyung Lee, Woo-Sung Jung, Youngsoo Kim, Younginha Jung, Yoon‐Kyu Song, Frédéric Chavane, Karthik Soman, Vignesh Muralidharan, V. Srinivasa Chakravarthy, Sabyasachi Shivkumar, Alekhya Mandali, Balasubramani Pragathi Priyadharsini, Hima Mehta, Catherine E. Davey, Braden A. W. Brinkman, Tyler Kekona, Fred Rieke, Michael A. Buice, Maurizio De Pittà, Hugues Berry, Nicolas Brunel, Michael Breakspear, Gary Marsat, Jordan Drew, Phillip D. Chapman, Kevin C. Daly, Samual P. Bradle, Sat Byul Seo, Jianzhong Su, Ege T. Kavalali, Justin Blackwell, LieJune Shiau, Laure Buhry, Kanishka Basnayake, Sue-Hyun Lee, Brandon A. Levy, Chris I. Baker, Timothee Leleu, Ryan T. Philips, Karishma Chhabria
Software Mentions: 7
Published: almost 10 years ago

10.3389/fmicb.2019.02359

Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)
Cited by: 21
Author(s): Perrine Cruaud, Adrien Vigneron, Marie‐Stéphanie Fradette, Caetano C. Dorea, Alexander I. Culley, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2019.02621

Influence of Various Processing Parameters on the Microbial Community Dynamics, Metabolomic Profiles, and Cup Quality During Wet Coffee Processing
Cited by: 31
Author(s): Sophia Jiyuan Zhang, Florac De Bruyn, Vasileios Pothakos, Gonzalo F Contreras, Z. Y. Cai, Cyril Moccand, Stefan Weckx, Luc De Vuyst
Software Mentions: 7
Published: over 6 years ago

10.3389/fninf.2014.00023

CyNEST: a maintainable Cython-based interface for the NEST simulator
Cited by: 22
Author(s): Yury V. Zaytsev, Abigail Morrison
Software Mentions: 7
Published: over 12 years ago

10.3389/fcell.2021.648279

Prognostic Value of a Novel Signature With Nine Hepatitis C Virus-Induced Genes in Hepatic Cancer by Mining GEO and TCGA Databases
Cited by: 5
Author(s): Jianming Wei, Bo Wang, Xibo Gao, Daqing Sun
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-021-96967-4

Parasites and diet as main drivers of the Malagasy gut microbiome richness and function
Cited by: 3
Author(s): Stanislas Mondot, Philippe Poirier, Ahmed Abou-Bacar, Valentin Greigert, Julie Brunet, Céline Nourrisson, Milijaona Randrianarivelojosia, Jean-Louis Razafindrakoto, Eugène Morel, Rivo Rakotomalala, Marion Leclerc, Karine Le Roux, Céline Monot, Patricia Lepage, Ermanno Candolfi
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40246-015-0050-2

A survey of computational tools for downstream analysis of proteomic and other omic datasets
Cited by: 17
Author(s): Anis Karimpour-Fard, L. Elaine Epperson, Lawrence Hunter
Software Mentions: 7
Published: over 10 years ago

10.3389/fonc.2020.636549

Construction and Validation of Nomograms Predicting Survival in Triple-Negative Breast Cancer Patients of Childbearing Age
Cited by: 1
Author(s): Xiang Cui, Deba Song, Xiaoxu Li
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0171072

Forest biomass density across large climate gradients in northern South America is related to water availability but not with temperature
Cited by: 67
Author(s): Esteban Álvarez-Dávila, Luis Cayuela, Sebastián González‐Caro, Ana M. Aldana, Pablo R. Stevenson, Oliver L. Phillips, Álvaro Cogollo, M. C. Peñuela, Patricio von Hildebrand, Eliana Jiménez, Omar Melo, Ana Catalina Londoño-Vega, Irina Mendoza, Oswaldo Velásquez, Fernando Fernández, Marcela Serna, Cesar Velázquez-Rua, Doris Benítez, José María Rey‐Benayas
Software Mentions: 7
Published: over 9 years ago

10.3389/fonc.2020.608334

Nomogram for Predicting Lymph Node Involvement in Triple-Negative Breast Cancer
Cited by: 18
Author(s): Xiang Cui, Hongxia Zhu, Jiefu Huang
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2020.590660

Identification of Key Genes and Potential New Biomarkers for Ovarian Aging: A Study Based on RNA-Sequencing Data
Cited by: 14
Author(s): Lingwei Ma, Huan Lu, Runhua Chen, Meng Wu, Yan Jin, Jinjin Zhang, Shixuan Wang
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2021.639634

Development and Validation of a Novel Prognostic Model for Acute Myeloid Leukemia Based on Immune-Related Genes
Cited by: 10
Author(s): Ran Li, Zuoyou Ding, Peng Jin, Shishuang Wu, Ge Jiang, Rufang Xiang, Wenfang Wang, Zhen Jin, Xiaoyang Li, Kai Xue, Xiaolu Wu, Junmin Li
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-019-39669-2

Parallel colonization of subalpine habitats in the central European mountains by Primula elatior
Cited by: 13
Author(s): Veronika Konečná, Michael Nowak, Filip Kolář
Software Mentions: 7
Published: over 7 years ago

10.1038/s42003-020-0969-2

Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development
Cited by: 11
Author(s): Maria Victoria Gómez Roldán, Farhaj Izhaq, Marion Verdenaud, John Saviour Yaw Eleblu, Aimen Haraghi, Vivien Sommard, Pierre Chambrier, David Latrasse, Teddy Jégu, Moussa Benhamed, Judit Szécsi, Mohammed Bendahmane, Adnane Boualem, Abdelhafid Bendahmane
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pcbi.1006644

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
Cited by: 35
Author(s): Yara Seif, Jonathan M. Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuñiga, Jared T. Broddrick, Karsten Zengler, Jaehyung Kim
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.69661

Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia
Cited by: 9
Author(s): Alex R. Schuurman, Tom D. Y. Reijnders, Anno Saris, Ivan Ramirez‐Moral, Michiel Schinkel, Justin de Brabander, Christine van Linge, Louis Vermeulen, Brendon P. Scicluna, W. Joost Wiersinga, Felipe A. Vieira Braga, Tom van der Poll
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12870-016-0754-z

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: over 10 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: about 11 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0215565

A robust data-driven genomic signature for idiopathic pulmonary fibrosis with applications for translational model selection
Cited by: 6
Author(s): Ron Ammar, Pitchumani Sivakumar, Gábor Járai, John Ryan Thompson
Software Mentions: 7
Published: about 7 years ago

10.4178/epih.e2019007

Diagnostic test accuracy: application and practice using R software
Cited by: 63
Author(s): Sung Ryul Shim, Seong-Jang Kim, Jong Hoo Lee
Software Mentions: 7
Published: over 7 years ago

10.1186/s12870-021-03142-y

Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0225577

Designing machine learning workflows with an application to topological data analysis
Cited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: over 9 years ago

10.1186/s12939-018-0754-8

Geographical heterogeneity and inequality of access to improved drinking water supply and sanitation in Nepal
Cited by: 24
Author(s): Wenjun He, Ying-Si Lai, Biraj Karmacharya, Bofeng Dai, Yuantao Hao, Dong Xu
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pone.0159138

Technical Advances of the Recombinant Antibody Microarray Technology Platform for Clinical Immunoproteomics
Cited by: 26
Author(s): Payam Delfani, Linda Dexlin Mellby, Malin Nordström, Andreas Holmér, Mattias Ohlsson, Carl Borrebaeck, Christer Wingren
Software Mentions: 7
Published: almost 10 years ago

10.1186/s12874-021-01319-5

Development and validation of a risk index to predict kidney graft survival: the kidney transplant risk index
Cited by: 7
Author(s): Sameera Senanayake, Sanjeewa Kularatna, Helen Healy, Nicholas Graves, Keshwar Baboolal, Matthew P. Sypek, Adrian Barnett
Software Mentions: 7
Published: about 5 years ago

10.1186/s13071-019-3860-6

Two-year longitudinal survey reveals high genetic diversity of Schistosoma mansoni with adult worms surviving praziquantel treatment at the start of mass drug administration in Uganda
Cited by: 18
Author(s): Christina L. Faust, Marco Crotti, Moses Arinaitwe, David Oguttu, Aidah Wamboko, Moses Adriko, Elizabeth K. Adekanle, Narcis B. Kabatereine, Edridah M. Tukahebwa, Alice Norton, Charlotte Gower, Joanne P. Webster, Poppy H. L. Lamberton
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2021.635863

Identification and Validation of a Novel DNA Damage and DNA Repair Related Genes Based Signature for Colon Cancer Prognosis
Cited by: 16
Author(s): Xuequan Wang, Shiwen Xu, Wei Wang, Shang Guo Piao, Xin-Li Mao, Xian-Bin Zhou, Yi Wang, Weidan Wu, Liping Ye, Shaowei Li
Software Mentions: 7
Published: over 5 years ago

10.2196/19791

Investigating the Prevalence of Reactive Online Searching in the COVID-19 Pandemic: Infoveillance Study
Cited by: 27
Author(s): Rafael A Badell-Grau, Jordan P. Cuff, Brendan P. Kelly, Helen Waller-Evans, Emyr Lloyd-Evans
Software Mentions: 7
Published: over 5 years ago

10.3389/fmed.2021.670694

Investigation of Coagulation Biomarkers to Assess Clinical Deterioration in SARS-CoV-2 Infection
Cited by: 15
Author(s): Paul Billoir, Kévin Alexandre, Thomas Duflot, Maxime Roger, S. Miranda, Odile Goria, Luc Marie Joly, Mathieu Demeyere, Guillaume Feugray, Valéry Brunel, Manuel Etienne, Véronique Le Cam Duchez
Software Mentions: 7
Published: about 5 years ago

10.1186/s13054-021-03503-x

Fluid proteomics of CSF and serum reveal important neuroinflammatory proteins in blood–brain barrier disruption and outcome prediction following severe traumatic brain injury: a prospective, observational study
Cited by: 26
Author(s): Caroline Lindblad, Elisa Pin, David R. Just, Faiez Al Nimer, Peter Nilsson, Bo‐Michael Bellander, Mikael Svensson, Fredrik Piehl, Eric Peter Thelin
Software Mentions: 7
Published: over 5 years ago

10.3390/v13061059

Comparative Analysis of Public RNA-Sequencing Data from Human Intestinal Enteroid (HIEs) Infected with Enteric RNA Viruses Identifies Universal and Virus-Specific Epithelial Responses
Cited by: 5
Author(s): Roberto J. Cieza, Jonathan L. Golob, Justin A. Colacino, Christiane E. Wobus
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: almost 5 years ago

10.1093/bioinformatics/btz698

scds: computational annotation of doublets in single-cell RNA sequencing data
Cited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-019-46412-4

Host–symbiont combinations dictate the photo-physiological response of reef-building corals to thermal stress
Cited by: 62
Author(s): Kenneth D. Hoadley, Allison M. Lewis, Drew C. Wham, D. Tye Pettay, Chris Grasso, Robin T. Smith, Dustin W. Kemp, Todd C. LaJeunesse, Mark E. Warner
Software Mentions: 7
Published: almost 7 years ago

10.7554/eLife.53360

Dual histone methyl reader ZCWPW1 facilitates repair of meiotic double strand breaks in male mice
Cited by: 25
Author(s): Mohamed Mahgoub, Jacob Paiano, Melania Bruno, Wei Wu, Sarath Pathuri, Xing Zhang, Sherry Ralls, Xiaodong Cheng, André Nussenzweig, Todd S. Macfarlan
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: over 8 years ago

10.1186/s13148-019-0651-z

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression
Cited by: 18
Author(s): Shivani Kamdar, Ruth Isserlin, Theodorus van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil Fleshner, Bharati Bapat
Software Mentions: 7
Published: over 7 years ago

10.1186/s12898-018-0187-7

A random survival forest illustrates the importance of natural enemies compared to host plant quality on leaf beetle survival rates
Cited by: 5
Author(s): Thomas A. Verschut, Peter A. Hambäck
Software Mentions: 7
Published: almost 8 years ago