Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-14-91

https://doi.org/10.1186/1471-2105-14-91

A comparison of methods for differential expression analysis of RNA-seq data

Cited by: 725
Author(s): Charlotte Soneson, Mauro Delorenzi
Published: over 11 years ago

Software Mentions 7

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq data
Papers that mentioned: 321
cran: NBPSeq
Negative Binomial Models for RNA-Sequencing Data
Papers that mentioned: 32
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136