Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.15830.2

https://doi.org/10.12688/f1000research.15830.2

An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data

Cited by: 2
Author(s): Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael Reich, Jill P. Mesirov
Published: over 5 years ago

Software Mentions 7

bioconductor: MAST

Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: conda

OS-agnostic, system-level binary package manager.
Papers that mentioned: 92

pypi: HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071

pypi: MAST

MAterials Simulation Toolkit
Papers that mentioned: 668

pypi: pip

The PyPA recommended tool for installing Python packages.
Papers that mentioned: 21

pypi: scanpy

Single-Cell Analysis in Python.
Papers that mentioned: 68