10.1371/journal.pone.0049230

Seasonal Response of Grasslands to Climate Change on the Tibetan Plateau
Cited by: 55
Author(s): Haiying Yu, Jianchu Xu, Erick Okuto, Eike Luedeling
Software Mentions: 4
Published: over 13 years ago

10.15252/embj.2019104185

Timeless couples G‐quadruplex detection with processing by <scp>DDX</scp> 11 helicase during <scp>DNA</scp> replication
Cited by: 42
Author(s): Letícia Koch Lerner, Sandro Holzer, M.L. Kilkenny, Saša Šviković, Pierre Murat, Davide Schiavone, Cara Bernadette Eldridge, Alice Bittleston, Joseph D. Maman, Dana Branzei, Katherine Stott, Luca Pellegrini, Julian E. Sale
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0212390

Facilitating reproducible project management and manuscript development in team science: The projects R package
Cited by: 3
Author(s): Nikolas I. Krieger, Adam T. Perzynski, Jarrod E. Dalton
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.11282

Population genomics of intrapatient HIV-1 evolution
Cited by: 205
Author(s): Fabio Zanini, Johanna Brodin, Lina Thebo, Christa Lanz, Göran Bratt, Jan Albert, Richard A. Neher
Software Mentions: 4
Published: over 10 years ago

10.3390/ijerph17145243

Translator Exposure APIs: Open Access to Data on Airborne Pollutant Exposures, Roadway Exposures, and Socio-Environmental Exposures and Use Case Application
Cited by: 4
Author(s): Alejandro Valencia, Lisa Stillwell, Stephen J. Appold, Saravanan Arunachalam, Steven J. Cox, Hao Xu, Charles Schmitt, Shepherd H. Schurman, Stavros Garantziotis, William Xue, Stanley C. Ahalt, Karamarie Fecho
Software Mentions: 4
Published: about 6 years ago

10.1186/2041-1480-5-41

Structuring research methods and data with the research object model: genomics workflows as a case study
Cited by: 26
Author(s): Kristina Hettne, Harish Dharuri, Jun Zhao, Katy Wolstencroft, Khalid Belhajjame, Stian Soiland‐Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, L. Verdes–Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A C ‘t Hoen, Sean Bechhofer, Carole Goble, Marco Roos
Software Mentions: 4
Published: almost 12 years ago

10.4049/jimmunol.1602033

Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells
Cited by: 45
Author(s): Ruth Brignall, Pierre Cauchy, Sarah L Bevington, Bethany Gorman, Angela Oliveira Pisco, James Bagnall, Christopher Boddington, William Rowe, Hazel England, Kevin Rich, Lorraine Schmidt, Nigel P. Dyer, Mark A. Travis, Sascha Ott, Dean A. Jackson, Peter N. Cockerill, Pawel Paszek
Software Mentions: 4
Published: almost 9 years ago

10.3390/s21010167

Open-Source Federated Learning Frameworks for IoT: A Comparative Review and Analysis
Cited by: 48
Author(s): Ivan Kholod, Evgeny Yanaki, Dmitry Fomichev, Evgeniy D. Shalugin, Evgenia Novikova, Evgeny Filippov, M. Nordlund
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-5-195

Cited by: 20
Author(s): Joachim Theilhaber, Anatoly Ulyanov, Anish Malanthara, Jack Cole, Dapeng Xu, Robert Nahf, Michael Heuer, Christoph Brockel, Steven Bushnell
Software Mentions: 4
Published: over 22 years ago

10.3390/cancers12102918

Time-Resolved Profiling Reveals ATF3 as a Novel Mediator of Endocrine Resistance in Breast Cancer
Cited by: 8
Author(s): Simone Borgoni, Emre Sofyalı, Maryam Soleimani, Heike Wilhelm, Karin Müller‐Decker, Rainer Will, Ashish Noronha, Lukas Beumers, Pernette J. Verschure, Yosef Yarden, Luca Magnani, Antoine H. C. van Kampen, Perry D. Moerland, Stefan Wiemann
Software Mentions: 4
Published: almost 6 years ago

10.3390/plants10050992

Linking Taxonomic, Phylogenetic and Functional Plant Diversity with Ecosystem Services of Cliffs and Screes in Greece
Cited by: 13
Author(s): Maria Panitsa, Ioannis Kokkoris, Konstantinos Kougioumoutzis, Anna Kontopanou, Ioannis Bazos, Arne Strid, Panayotis Dimopoulos
Software Mentions: 4
Published: about 5 years ago

10.3390/diagnostics10121113

Deep Learning Assisted Localization of Polycystic Kidney on Contrast-Enhanced CT Images
Cited by: 15
Author(s): Djeane Debora Onthoni, Ting-Wen Sheng, Prasan Kumar Sahoo, Li-Jen Wang, Pushpanjali Gupta
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0006344

Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome
Cited by: 31
Author(s): Laura-Isobel McCall, Anupriya Tripathi, Fernando Vargas, Rob Knight, Pieter C. Dorrestein, Jair L. Siqueira-Neto
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-15-176

QMachine: commodity supercomputing in web browsers
Cited by: 17
Author(s): Sean R. Wilkinson, Jonas S. Almeida
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0212189

Preprocessing 2D data for fast convex hull computations
Cited by: 2
Author(s): Oswaldo Cadenas, Graham M. Megson
Software Mentions: 4
Published: over 7 years ago

10.3390/jcm8081158

Role of MYC-miR-29-B7-H3 in Medulloblastoma Growth and Angiogenesis
Cited by: 29
Author(s): Ian J. Purvis, Avilala Janardhan, Maheedhara R. Guda, Sujatha Venkataraman, Rajeev Vibhakar, Andrew J. Tsung, Kiran Kumar Velpula, Swapna Asuthkar
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-018-0550-0

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Cited by: 67
Author(s): Johannes Alneberg, Christofer M. G. Karlsson, Anna-Maria Divne, Claudia Bergin, Félix Homa, Markus V. Lindh, Luisa W. Hugerth, Thijs J. G. Ettema, Stefan Bertilsson, Anders F. Andersson, Jarone Pinhassi
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0210859

Synthetic lethality guiding selection of drug combinations in ovarian cancer
Cited by: 16
Author(s): Andreas Heinzel, Maximilian Marhold, Paul M. Mayer, Michael Schwarz, Erwin Tomasich, Arno Lukas, Michael Krainer, Paul Perco
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-48963-y

Daylight affects human thermal perception
Cited by: 64
Author(s): Giorgia Chinazzo, Jan Wienold, Marilyne Andersen
Software Mentions: 4
Published: almost 7 years ago

10.1097/MD.0000000000017504

Identification of genes related to mental disorders by text mining
Cited by: 6
Author(s): Ying Wu, Meilin Dang, Hongxia Li, Xing Jin, Wenxiao Yang
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/5590743

Summarizing the Effective Herbs for the Treatment of Hypertensive Nephropathy by Complex Network and Machine Learning
Cited by: 6
Author(s): Jia-Ming Huan, Wen-Ge Su, Li Wei, Chao Gao, Pingzhu Zhou, FU Chun-sheng, Xiaofeng Wang, Yimin Wang
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/6649331

An Apriori Algorithm-Based Association Rule Analysis to Identify Acupoint Combinations for Treating Diabetic Gastroparesis
Cited by: 17
Author(s): Ping-Hsun Lu, Jui-Lin Keng, Fu-Ming Tsai, Po-Hsuan Lu, Chan‐Yen Kuo
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.9395

Doing nothing and what it looks like: inactivity in fattening cattle
Cited by: 8
Author(s): Sara Hintze, Freija Maulbetsch, Lucy Asher, Christoph Winckler
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/3621677

A Data Mining-Based Analysis of Core Herbs on Different Patterns (Zheng) of Non-Small Cell Lung Cancer
Cited by: 2
Author(s): Xiangjun Qi, Zehuai Guo, Qianying Chen, Wanning Lan, Zhuangzhong Chen, Wenmin Chen, Lizhu Lin
Software Mentions: 4
Published: about 5 years ago

10.1093/biostatistics/kxw041

False discovery rates: a new deal
Cited by: 474
Author(s): Matthew Stephens
Software Mentions: 4
Published: almost 10 years ago

10.21203/rs.3.rs-141578/v1

COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone
Cited by: 14
Author(s): Aartik Sarma, Stephanie A. Christenson, Eran Mick, Thomas Deiss, Catherine DeVoe, Angela Oliveira Pisco, Rajani Ghale, Alejandra Jauregui, Ashley Byrne, Farzad Moazed, Natasha Spottiswoode, Pratik Sinha, Beth Shoshana Zha, Norma Neff, Michelle Tan, Paula Hayakawa Serpa, K. Mark Ansel, Jennifer G. Wilson, Aleksandra Leligdowicz, Emily Seigel, Marina Sirota, Joseph L. DeRisi, Michael A. Matthay, Carolyn M. Hendrickson, Kirsten N. Kangelaris, Matthew F. Krummel, Prescott G. Woodruff, David J. Erle, Carolyn S. Calfee, Charles Langelier
Software Mentions: 4
Published: over 5 years ago

10.1002/phy2.239

Differential psychophysiological interactions of insular subdivisions during varied oropharyngeal swallowing tasks
Cited by: 8
Author(s): Ianessa A. Humbert, Donald G. McLaren
Software Mentions: 4
Published: over 12 years ago

10.3390/plants10061240

Cleaning the Medicago Microarray Database to Improve Gene Function Analysis
Cited by: 1
Author(s): Francesca Marzorati, Chu Wang, Giulio Pavesi, Luca Mizzi, Piero Morandini
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-80444-5

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt
Cited by: 23
Author(s): Adrienn Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bànyai, G. Szita, Norbert Solymosi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-93552-7

Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95676-2

Small pigmented eukaryote assemblages of the western tropical North Atlantic around the Amazon River plume during spring discharge
Cited by: 1
Author(s): Sophie Charvet, Eun-Soo Kim, Ajit Subramaniam, Joseph P. Montoya, Solange Duhamel
Software Mentions: 4
Published: almost 5 years ago

10.3390/toxins9030103

How the Cobra Got Its Flesh-Eating Venom: Cytotoxicity as a Defensive Innovation and Its Co-Evolution with Hooding, Aposematic Marking, and Spitting
Cited by: 72
Author(s): Nadya Panagides, Timothy N. W. Jackson, Maria P. Ikonomopoulou, Kevin Arbuckle, Rudolf Pretzler, Daryl C. Yang, Syed Abid Ali, Ivan Koludarov, James Dobson, Brittany Sanker, Angelique K. Asselin, Renan Castro Santana, Iwan Hendrikx, Harold van der Ploeg, Jeremie Tai-A-Pin, Romilly van den Bergh, Harald M. I. Kerkkamp, Freek J. Vonk, Arno Naude, Morné Strydom, Louis Jacobsz, Nathan Dunstan, Marc Jaeger, Wayne C. Hodgson, John J. Miles, Bryan G. Fry
Software Mentions: 4
Published: over 9 years ago

10.1128/mBio.00802-17

Evolution of the <i>Staphylococcus argenteus</i> ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes
Cited by: 37
Author(s): Danesh Moradigaravand, Dorota Jamrozy, Rafal Mostowy, Annaliesa S. Anderson, Emma K. Nickerson, Janjira Thaipadungpanit, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Sarunporn Tandhavanant, Chanthiwa Wikraiphat, Gumphol Wongsuvan, Nittaya Teerawattanasook, Yaowaruk Jutrakul, Nuttiya Srisurat, Prajuab Chaimanee, T. Eoin West, Beth Blane, Julian Parkhill, Narisara Chantratita, Sharon J. Peacock
Software Mentions: 4
Published: almost 9 years ago

10.1128/mBio.03281-20

Longitudinal Multi-omics and Microbiome Meta-analysis Identify an Asymptomatic Gingival State That Links Gingivitis, Periodontitis, and Aging
Cited by: 21
Author(s): Shi Huang, Tao He, Yue Feng, Xiang Xu, Lijiang Wang, Pengfei Zhu, Fei Teng, Zheng Sun, Xiaohui Liu, Gongchao Jing, Xiaoquan Su, Lijian Jin, Jiquan Liu, Jian Xu
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00296-19

Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities
Cited by: 47
Author(s): Zhou Shi, Huaqun Yin, Joy D. Van Nostrand, James W. Voordeckers, Qichao Tu, Ye Deng, Mengting Yuan, Aifen Zhou, Ping Zhang, Naijia Xiao, Daliang Ning, Zhili He, Liyou Wu, Jizhong Zhou
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00633-21

Cross-Scale Analyses of Animal and Human Gut Microbiome Assemblies from Metacommunity to Global Landscape
Cited by: 13
Author(s): Zhanshan Sam
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41396-020-0694-3

Coexistence of genetically different Rhizophagus irregularis isolates induces genes involved in a putative fungal mating response
Cited by: 9
Author(s): Ivan D. Mateus, Edward C. Rojas, Romain Savary, Cindy Dupuis, Frédéric G. Masclaux, Consolée Aletti, Ian R. Sanders
Software Mentions: 4
Published: about 6 years ago

10.3390/ijerph15061146

Which Compounds Contribute Most to Elevated Soil Pollution and the Corresponding Health Risks in Floodplains in the Headwater Areas of the Central European Watershed?
Cited by: 5
Author(s): Jan Skála, Radim Vácha, Pavel Čupr
Software Mentions: 4
Published: about 8 years ago

10.1016/j.jinsphys.2017.12.005

Does plasticity in thermal tolerance trade off with inherent tolerance? The influence of setal tracheal gills on thermal tolerance and its plasticity in a group of European diving beetles
Cited by: 24
Author(s): Wilco C. E. P. Verberk, Piero Calosi, John I. Spicer, Siegfried Kehl, David T. Bilton
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.08904

Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals
Cited by: 57
Author(s): Alex de Mendoza, Hiroshi Suga, Joan Permanyer, Manuel Irimia, Iñaki Ruiz‐Trillo
Software Mentions: 4
Published: almost 11 years ago

10.18632/oncotarget.24365

New therapeutic targets for pulmonary sarcomatoid carcinomas based on their genomic and phylogenetic profiles
Cited by: 40
Author(s): Takahiro Nakagomi, Taichiro Goto, Yosuke Hirotsu, Daichi Shikata, Yujiro Yokoyama, Rumi Higuchi, Kenji Amemiya, Kenichiro Okimoto, Toshio Oyama, Hitoshi Mochizuki, Masao Omata
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.60321

Graphical-model framework for automated annotation of cell identities in dense cellular images
Cited by: 18
Author(s): Shivesh Chaudhary, Sol Ah Lee, Yueyi Li, Dhaval Patel, Hang Lu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-88577-x

Predicting range shifts of three endangered endemic plants of the Khorassan-Kopet Dagh floristic province under global change
Cited by: 20
Author(s): Mohammad Bagher Erfanian, Mostafa Sagharyan, Farshid Memariani, Hamid Ejtehadi
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12514

Profiling the immunome of little brown myotis provides a yardstick for measuring the genetic response to white-nose syndrome
Cited by: 24
Author(s): Michael E. Donaldson, Christina M. Davy, Craig K. R. Willis, Scott McBurney, Allysia Park, Christopher J. Kyle
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pcbi.1005659

OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
Cited by: 1,367
Author(s): Peter Eastman, Jason Swails, John D. Chodera, Robert T. McGibbon, Yulan Zhao, Kyle A. Beauchamp, Lee‐Ping Wang, Andrew C. Simmonett, Matthew P. Harrigan, Chaya Stern, Rafal Wiewiora, Bernard R. Brooks, Vijay S. Pande
Software Mentions: 4
Published: about 9 years ago

10.1371/currents.outbreaks.90e80717c4e67e1a830f17feeaaf85de

Integrating Environmental Monitoring and Mosquito Surveillance to Predict Vector-borne Disease: Prospective Forecasts of a West Nile Virus Outbreak
Cited by: 22
Author(s): Justin K. Davis, Geoffrey P. Vincent, Michael B. Hildreth, Lon Kightlinger, Christopher Carlson, Michael C. Wimberly
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-64270-3

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Cited by: 17
Author(s): Jakub W Wojciechowski, Małgorzata Kotulska
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.6008

The uplift of the Qinghai–Tibet Plateau and glacial oscillations triggered the diversification of <i>Tetraogallus</i> (Galliformes, Phasianidae)
Cited by: 5
Author(s): Li Ding, Jicheng Liao, Naifa Liu
Software Mentions: 4
Published: over 6 years ago

10.1111/ele.13476

Angiosperm speciation cools down in the tropics
Cited by: 71
Author(s): Javier Igea, Andrew J. Tanentzap
Software Mentions: 4
Published: over 6 years ago

10.3390/genes10050338

Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution
Cited by: 24
Author(s): Changcheng Wu, Jian Lü
Software Mentions: 4
Published: over 7 years ago

10.1073/pnas.2017384118

Fifty million years of beetle evolution along the Antarctic Polar Front
Cited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: about 5 years ago

10.3389/fnagi.2021.733388

Aging Increases Cross-Modal Distraction by Unexpected Sounds: Controlling for Response Speed
Cited by: 0
Author(s): Alicia Leiva, Pilar Andrés, Fabrice B. R. Parmentier
Software Mentions: 4
Published: almost 5 years ago

10.1111/eva.12979

Estimating the contribution of Greenland Halibut (<i>Reinhardtius hippoglossoides</i>) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter
Cited by: 16
Author(s): Emilie Carrier, Anne‐Laure Ferchaud, Éric Normandeau, Pascal Sirois, Louis Bernatchez
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms22179422

Application of Molecular Dynamics Simulations in the Analysis of Cyclodextrin Complexes
Cited by: 28
Author(s): Anna Mazurek, Łukasz Szeleszczuk, Tomasz Gubica
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0213245

Optimizing predictive performance of criminal recidivism models using registration data with binary and survival outcomes
Cited by: 14
Author(s): Nikolaj Tollenaar, P.G.M. van der Heijden
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-021-02485-x

Mapping the evolving landscape of super-enhancers during cell differentiation
Cited by: 16
Author(s): Yan Kai, Bin E. Li, Min Zhu, Grace Y Li, Fei Chen, Yingli Han, Hye Young Ji, Stuart H. Orkin, Wenqing Cai, Jialiang Huang, Guo‐Cheng Yuan
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8060865

The Role of Genetic Factors in Characterizing Extra-Intestinal Manifestations in Crohn’s Disease Patients: Are Bayesian Machine Learning Methods Improving Outcome Predictions?
Cited by: 10
Author(s): Daniele Bottigliengo, Paola Berchialla, Corrado Lanera, Danila Azzolina, Giulia Lorenzoni, Matteo Martinato, Daniela Giachino, Ileana Baldi, Darío Gregori
Software Mentions: 4
Published: about 7 years ago

10.1107/S2059798317017582

<i>ARCIMBOLDO</i>on coiled coils
Cited by: 39
Author(s): Iracema Caballero, Massimo Sammito, Claudia Millán, А. А. Лебедев, Nicolas Soler, Isabel Usón
Software Mentions: 4
Published: over 8 years ago

10.1107/S2059798318002310

Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in<i>AMPLE</i>
Cited by: 14
Author(s): Daniel J. Rigden, Jens M. H. Thomas, Felix Šimkovic, Adam J Simpkin, Martyn Winn, Olga Mayans, Ronan Keegan
Software Mentions: 4
Published: over 8 years ago

10.1186/s40462-015-0062-5

A hidden Markov model for reconstructing animal paths from solar geolocation loggers using templates for light intensity
Cited by: 56
Author(s): Eldar Rakhimberdiev, David W. Winkler, Eli S. Bridge, Nathaniel E. Seavy, Daniel Sheldon, Theunis Piersma, Anatoly A. Saveliev
Software Mentions: 4
Published: almost 11 years ago

10.1111/eva.12274

Morphological and genomic comparisons of<scp>H</scp>awaiian and<scp>J</scp>apanese<scp>B</scp>lack‐footed<scp>A</scp>lbatrosses (<i><scp>P</scp>hoebastria nigripes</i>) using double digest<scp>RAD</scp>seq: implications for conservation
Cited by: 39
Author(s): Elisa G. Dierickx, Allison J. Shultz, Fumio Sato, Takashi Hiraoka, Scott V. Edwards
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0255420

Knowledge, attitude and practices of community pharmacists regarding COVID-19: A paper-based survey in Vietnam
Cited by: 12
Author(s): Huong Thi Thanh Nguyen, Dai Xuan Dinh, Văn Minh Nguyễn
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0254730

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages
Cited by: 2
Author(s): Fan Yang, Daniel S. Andersen, Steven Trabue, Angela D. Kent, Laura M. Pepple, Richard S. Gates, Adina Howe
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0129674

An Algorithm for Protein Helix Assignment Using Helix Geometry
Cited by: 11
Author(s): Chen Cao, Shaoping Xu, Lincong Wang
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0192133

Extrinsic grouping factors in motion-induced blindness
Cited by: 3
Author(s): Dina Devyatko, Alexander Pastukhov
Software Mentions: 4
Published: over 8 years ago

10.1093/texcom/tgaa037

Neural and Behavioral Evidence for Frequency-Selective Context Effects in Rhythm Processing in Humans
Cited by: 11
Author(s): Tomas Lenc, Peter E. Keller, Manuel Varlet, Sylvie Nozaradan
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-019-0406-6

P38 inhibition reverses TGFβ1 and TNFα-induced contraction in a model of proliferative vitreoretinopathy
Cited by: 27
Author(s): Lauren Schiff, Nathan C. Boles, Marie Fernandes, Bar Nachmani, Ronald C. Gentile, Timothy A. Blenkinsop
Software Mentions: 4
Published: over 7 years ago

10.3389/fnhum.2019.00022

Human Sensory LTP Predicts Memory Performance and Is Modulated by the BDNF Val66Met Polymorphism
Cited by: 21
Author(s): Meg J. Spriggs, Christopher Thompson, David Moreau, Nicolas A. McNair, C. Carolyn Wu, Yvette N. Lamb, Nicole S. McKay, Rohan O. C. King, Ushtana Antia, Andrew N. Shelling, Jeff P. Hamm, Timothy J. Teyler, Bruce Russell, Karen E. Waldie, Ian J. Kirk
Software Mentions: 4
Published: over 7 years ago

10.3389/fpsyg.2019.01893

Effects of Mortality Salience on Physiological Arousal
Cited by: 13
Author(s): Johannes Klackl, Eva Jonas
Software Mentions: 4
Published: almost 7 years ago

10.5334/joc.153

Morpheme Position Coding in Reading Development as Explored With a Letter Search Task
Cited by: 1
Author(s): Jana Hasenäcker, Maria Ktori, Davide Crepaldi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-03396-3

Choice of analysis pathway dramatically affects statistical outcomes in breaking continuous flash suppression
Cited by: 12
Author(s): James Allen Kerr, Guido Hesselmann, Romy Räling, Isabell Wartenburger, Philipp Sterzer
Software Mentions: 4
Published: about 9 years ago

10.1128/mSphereDirect.00120-18

Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity
Cited by: 26
Author(s): Fok‐Moon Lum, David Lee, Tze-Kwang Chua, Jeslin J. L. Tan, Cheryl Yi‐Pin Lee, Xuan Li, Yongxiang Fang, Bernett Lee, Wearn‐Xin Yee, Natasha Y. Rickett, Po Ying Chia, Vanessa Lim, Yee‐Sin Leo, David A. Matthews, Julian A. Hiscox, Lisa F. P. Ng
Software Mentions: 4
Published: over 8 years ago

10.1186/s12862-021-01870-1

Differential allocation in a gift-giving spider: males adjust their reproductive investment in response to female condition
Cited by: 4
Author(s): Diego Solano-Brenes, Luiz Ernesto Costa-Schmidt, María J. Albo, Glauco Machado
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0201368

Biodiversity thresholds in invertebrate communities: The responses of dung beetle subgroups to forest loss
Cited by: 10
Author(s): Clarissa Machado Pinto-Leite, Eduardo Mariano‐Neto, Pedro Luís Bernardo da Rocha
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0253264

Dietary vitamin E reaches the mitochondria in the flight muscle of zebra finches but only if they exercise
Cited by: 6
Author(s): Clara Cooper-Mullin, Wales A. Carter, Ronald S. Amato, David W. Podlesak, Scott R. McWilliams
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0058114

Spatial Segregation within the Spawning Migration of North Eastern Atlantic Mackerel (Scomber scombrus) as Indicated by Juvenile Growth Patterns
Cited by: 18
Author(s): Teunis Jansen, Andrew C. Campbell, Thomas Brunel, Lotte Worsøe Clausen
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0212725

Forest fragmentation and impacts of intensive agriculture: Responses from different tree functional groups
Cited by: 5
Author(s): Juliana Cristina Tenius Ribeiro, André Felippe Nunes-Freitas, E. C. C. Fidalgo, Mariella Camardelli Uzêda
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms20082038

Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells
Cited by: 15
Author(s): Zahra Masoumi, Grégory E. Maes, Koen Herten, Álvaro Cortés-Calabuig, Abdul Ghani Alattar, Eva Hanson, Lena Erlandsson, Éva Mezey, Mattias Magnusson, Joris Robert Vermeesch, Mary Familari, Stefan R. Hansson
Software Mentions: 4
Published: over 7 years ago

10.3390/insects11060371

Modified Atmosphere Does Not Reduce the Efficacy of Phytosanitary Irradiation Doses Recommended for Tephritid Fruit Flies
Cited by: 10
Author(s): Vanessa Dias, Guy J. Hallman, Olga Yaneth Martínez-Barrera, Nick V Hurtado, A. A. Cardoso, Andrew G. Parker, Luis A. Caravantes, Camilo Rivera, Alexandre S Araújo, Florence Maxwell, Carlos E Cáceres-Barrios, Marc J. B. Vreysen, Scott W. Myers
Software Mentions: 4
Published: about 6 years ago

10.1098/rspb.2017.0391

Manipulation of feeding regime alters sexual dimorphism for lifespan and reduces sexual conflict in <i>Drosophila melanogaster</i>
Cited by: 15
Author(s): Elizabeth M. L. Duxbury, Wayne G. Rostant, Tracey Chapman
Software Mentions: 4
Published: over 9 years ago

10.1098/rsos.180205

Effects of dimming light-emitting diode street lights on light-opportunistic and light-averse bats in suburban habitats
Cited by: 20
Author(s): Elizabeth G. Rowse, Stephen Harris, Gareth Jones
Software Mentions: 4
Published: about 8 years ago

10.1002/jrsm.1347

Pitfalls of using the risk ratio in meta‐analysis
Cited by: 36
Author(s): Ilyas Bakbergenuly, David C. Hoaglin, Elena Kulinskaya
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.10052

Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs
Cited by: 71
Author(s): Jie Li, Kecheng Lei, Zengrui Wu, Weihua Li, Guixia Liu, Jianwen Liu, Feixiong Cheng, Yun Tang
Software Mentions: 4
Published: about 10 years ago

10.1186/s40462-021-00264-8

Caution is warranted when using animal space-use and movement to infer behavioral states
Cited by: 9
Author(s): Frances E. Buderman, Tess M. Gingery, Duane R. Diefenbach, Laura C. Gigliotti, Danielle R. Begley-Miller, Marc E. McDill, Bret D. Wallingford, Christopher S. Rosenberry, Patrick J. Drohan
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0131697

Spatial and Temporal Characteristics of Pastoral Mobility in the Far North Region, Cameroon: Data Analysis and Modeling
Cited by: 20
Author(s): Ningchuan Xiao, Shanshan Cai, Mark Moritz, Rebecca Garabed, Laura W. Pomeroy
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0233597

Diversification rate vs. diversification density: Decoupled consequences of plant height for diversification of Alooideae in time and space
Cited by: 9
Author(s): Florian C. Boucher, Anne-Sophie Quatela, Allan G. Ellis, G. Anthony Verboom
Software Mentions: 4
Published: about 6 years ago

10.1099/mgen.0.000095

Whole genome analysis of Yersinia ruckeri isolated over 27 years in Australia and New Zealand reveals geographical endemism over multiple lineages and recent evolution under host selection
Cited by: 16
Author(s): Andrew C. Barnes, J. Delamare-Deboutteville, Nicholas Gudkovs, Cara L. Brosnahan, R. I. Guy Morrison, J Carson
Software Mentions: 4
Published: over 9 years ago

10.1099/mgen.0.000205

Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages
Cited by: 37
Author(s): Koji Yahara, Shuichi Nakayama, Ken Shimuta, Ken-ichi Lee, Masatomo Morita, Takuya Kawahata, Toshiro Kuroki, Yuko Watanabe, Hitomi Ohya, Mitsuru Yasuda, Takashi Deguchi, Xavier Didelot, Makoto Ohnishi
Software Mentions: 4
Published: about 8 years ago

10.1099/mgen.0.000582

Achromobacter spp. genetic adaptation in cystic fibrosis
Cited by: 4
Author(s): Miglė Gabrielaitė, Finn C. Nielsen, Helle Krogh Johansen, Rasmus Lykke Marvig
Software Mentions: 4
Published: about 5 years ago

10.1111/mec.12462

Divergent evolutionary processes associated with colonization of offshore islands
Cited by: 88
Author(s): Natália Martínková, Ross Barnett, Thomas Cucchi, Rahel Struchen, M. Pascal, Michel Pascal, Martin C. Fischer, Thomas Higham, Selina Brace, Simon Y. W. Ho, Jean‐Pierre Quéré, Paul O’Higgins, Laurent Excoffier, Gerald Heckel, A. Rus Hoelzel, Keith Dobney, Jeremy B. Searle
Software Mentions: 4
Published: almost 13 years ago

10.1002/ece3.4861

Living on the edge: Exploring the role of coastal refugia in the Alexander Archipelago of Alaska
Cited by: 15
Author(s): Yadéeh E. Sawyer, Stephen O. MacDonald, Enrique P. Lessa, Joseph A. Cook
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.3161

Cryptic lineage divergence in marine environments: genetic differentiation at multiple spatial and temporal scales in the widespread intertidal goby<i>Gobiosoma bosc</i>
Cited by: 23
Author(s): Borja Milá, James L. Van Tassell, Jatziri A. Calderón, Lukas Rüber, Rafael Zardoya
Software Mentions: 4
Published: about 9 years ago

10.1111/jbi.13525

Ancestral range reconstruction of remote oceanic island species of <i>Plantago</i> (Plantaginaceae) reveals differing scales and modes of dispersal
Cited by: 20
Author(s): Natalie Iwanycki Ahlstrand, Brecht Verstraete, Gustavo Hassemer, Stephanie Dunbar-Co, Ronald K. Hoggard, Heidi M. Meudt, Nina Rønsted
Software Mentions: 4
Published: over 7 years ago

10.1111/jeb.12022

Loss of genetic variability in social spiders: genetic and phylogenetic consequences of population subdivision and inbreeding
Cited by: 33
Author(s): Ingi Agnarsson, Leticia Avilés, Wayne P. Maddison
Software Mentions: 4
Published: over 13 years ago

10.1093/sysbio/syu052

Bayesian Species Delimitation Can Be Robust to Guide-Tree Inference Errors
Cited by: 52
Author(s): Chi Zhang, Bruce Rannala, Ziheng Yang
Software Mentions: 4
Published: about 12 years ago

10.1099/vir.0.000035

Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus
Cited by: 9
Author(s): Paweł M. Bęczkowski, Joseph Hughes, Roman Biek, Annette Litster, Brian J. Willett, Margaret J. Hosie
Software Mentions: 4
Published: over 11 years ago

10.1099/vir.0.000062

Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity
Cited by: 51
Author(s): Eleanor Gaunt, Heli Harvala, Riikka Österback, Vattipally B. Sreenu, Emma C. Thomson, Matti Waris, Peter Simmonds
Software Mentions: 4
Published: over 11 years ago

10.1186/s12859-019-2637-4

CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features
Cited by: 4
Author(s): Yao Yao, Zheng Liu, Qi Wei, Stephen A. Ramsey
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0160227

Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers
Cited by: 19
Author(s): Stephan Pabinger, Karina Ernst, Walter Pulverer, Rainer Kallmeyer, Ana M. Valdes, Sarah Metrustry, Denis Katic, Angelo Nuzzo, Albert Kriegner, Klemens Vierlinger, Andreas Weinhaeusel
Software Mentions: 4
Published: about 10 years ago

10.1016/j.dib.2018.11.034

Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
Cited by: 4
Author(s): Mostafa Abdelrahman, Mai Mitoma, Takao Ikeuchi, Motoyuki Mori, Kyoko Murakami, Yukio Ozaki, Masaru Matsumoto, Atsuko Uragami, Akira Kanno
Software Mentions: 4
Published: over 7 years ago