Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-015-0617-1

https://doi.org/10.1186/s13059-015-0617-1

CopywriteR: DNA copy number detection from off-target sequence data

Cited by: 169
Author(s): Thomas Kuilman, Arno Velds, Kristel Kemper, Marco Ranzani, Lorenzo Bombardelli, Marlous Hoogstraat, Ekaterina Nevedomskaya, Guotai Xu, Julian de Ruiter, Martijn P. Lolkema, Bauke Ylstra, Jos Jonkers, Sven Rottenberg, Lodewyk F.A. Wessels, David J. Adams, Daniel S. Peeper, Oscar Krijgsman
Published: over 9 years ago

Software Mentions 4

bioconductor: CopywriteR
Copy number information from targeted sequencing using off-target reads
Papers that mentioned: 28
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233