Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000456

https://doi.org/10.1099/mgen.0.000456

Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone

Cited by: 14
Author(s): Eleonora Tassinari, Matt Bawn, Gaëtan Thilliez, Oliver J. Charity, Luke Acton, Mark Kirkwood, Liljana Petrovska, Timothy J. Dallman, Catherine M. Burgess, Neil Hall, Geraldine Duffy, Robert A. Kingsley
Published: about 4 years ago

Software Mentions 4

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: genoPlotR
Plot Publication-Grade Gene and Genome Maps
Papers that mentioned: 96
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819