pypi: GenomeTreeTk
A toolbox for working with genome trees.
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pypi: SDF
Work with Scientific Data Format files in Python
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cran: rpanel
Simple Interactive Controls for R using the 'tcltk' Package
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pypi: geoquery
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pypi: dnds
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
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pypi: haystack
Search C Structures in a process' memory
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pypi: gtool
A framework for building security governance, risk and compliance tools.
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pypi: domingo
A django-like modelling interface for various schemaless dbs
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pypi: encode
...
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pypi: HSI
Interactivity class for hyperspectral ENVI-BIL images
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pypi: myokit
A modeling and simulation tool for cardiac cellular electrophysiology
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cran: sim1000G
Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
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cran: skmeans
Spherical k-Means Clustering
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cran: sketcher
Pencil Sketch Effect
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pypi: myvariant
Python Client for MyVariant.Info services.
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pypi: interval
Python interval and interval set implementation
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pypi: na
Functions and script to peek into the callable/argument structure of a set of callables
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pypi: JVP
A first draft of JVP tools
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pypi: drawer
Dynamically Re-applyable Aspect WEaveR — an implementation of dynamic aspect weaving in Python.
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pypi: iu
This a package for iu
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pypi: dredge
User-friendly thresholded subspace-constrained mean shift for geospatial data
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pypi: km
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pypi: heudiconv
Heuristic DICOM Converter
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pypi: hex
Hexdump command line utility.
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cran: statcomp
Statistical Complexity and Information Measures for Time Series Analysis
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pypi: Locker
Hierarchical Resource Locking Mechanism
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pypi: nanoraw
Analysis of nanopore sequencing data.
Papers that mentioned: 3
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pypi: Mail
Simple wrapper over Python's email package for common operations, and a mail pipe.
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pypi: originlab
Originlab Utilities
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pypi: SeedWaterSegmenter
graphical program to interactively segment image stacks of cells in tissue with edge-labels (aka. white outlines)
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pypi: hic
Tools for analyzing heavy-ion collision simulations.
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pypi: dual
`dual` is a package for dual problem.
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pypi: mmcif
mmCIF Core Access Library
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pypi: moma
moma
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cran: WEE
Weighted Estimated Equation (WEE) Approaches in Genetic Case-Control Studies
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pypi: om
Collect usage for remote boxes without configuration.
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cran: WR
Win Ratio Analysis of Composite Time-to-Event Outcomes
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pypi: optitrack
optitrack c ++ wrapper for python 3.8, motive 2.3.0
Papers that mentioned: 3
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pypi: pintail
Build complete web site from Mallard sources.
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pypi: plex
Plex is a library building lexical analysers
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pypi: POAP
Python Optimization Asynchronous Plumbing.
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pypi: pre
一個測試用的檔案!
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pypi: sentence2vec
an elegant sentence2vec
Papers that mentioned: 3
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pypi: pyham
A tool to analyse Hierarchical Orthologous Groups (HOGs)
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pypi: PyMieScatt
A collection of forward and inverse Mie solving routines based on Bohren and Huffman's Mie Theory derivations.
Papers that mentioned: 3
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pypi: PyNGL
PyNGL is a module used to visualize scientific data.
Papers that mentioned: 3
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pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
Papers that mentioned: 3
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pypi: Rubik
A Rubik's Cube game.
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pypi: samba
A very small PaaS to do git push app deployments to your own servers, similar to Heroku
Papers that mentioned: 3
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pypi: scraper
Configurable Python Web Scraper
Papers that mentioned: 3
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pypi: tagger
tagging w/ rdflib
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pypi: Threadripper
threadpool in processpool
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pypi: hicrep
Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with sparse contact matrix support
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pypi: elektra
Power block price creation and conversion
Papers that mentioned: 3
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pypi: hivmmer
An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER.
Papers that mentioned: 3
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cran: readstata13
Import 'Stata' Data Files
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pypi: evol
A Grammar for Evolutionary Algorithms and Heuristics
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pypi: HLL
HyperLogLog implementation in C for python.
Papers that mentioned: 3
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cran: ps
List, Query, Manipulate System Processes
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cran: ptw
Parametric Time Warping
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cran: PublicationBias
Sensitivity Analysis for Publication Bias in Meta-Analyses
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pypi: HOPP
Hybrid Systems Optimization and Performance Platform
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pypi: hoppMCMC
An adaptive basin-hopping Markov-chain Monte Carlo algorithm for Bayesian optimisation
Papers that mentioned: 3
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cran: puniform
Meta-Analysis Methods Correcting for Publication Bias
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cran: qualtRics
Download 'Qualtrics' Survey Data
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cran: QZ
Generalized Eigenvalues and QZ Decomposition
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cran: RADanalysis
Normalization and Study of Rank Abundance Distributions
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pypi: seqenv
Assign environment ontology (EnvO) terms to DNA sequences
Papers that mentioned: 3
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cran: Radviz
Project Multidimensional Data in 2D Space
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cran: scholar
Analyse Citation Data from Google Scholar
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cran: rareGE
Testing Gene-Environment Interaction for Rare Genetic Variants
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cran: rARPACK
Solvers for Large Scale Eigenvalue and SVD Problems
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cran: rbi.helpers
'rbi' Helper Functions
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cran: rDEA
Robust Data Envelopment Analysis (DEA) for R
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pypi: FALL
A automated penetration testing tool
Papers that mentioned: 3
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cran: sdmpredictors
Species Distribution Modelling Predictor Datasets
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cran: RECA
Relevant Component Analysis for Supervised Distance Metric Learning
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cran: SDMtune
Species Distribution Model Selection
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cran: recluster
Ordination Methods for the Analysis of Beta-Diversity Indices
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cran: sensiPhy
Sensitivity Analysis for Comparative Methods
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cran: sgPLS
Sparse Group Partial Least Square Methods
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pypi: ndl
Easy file searching from the command-line
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pypi: optlang
Formulate optimization problems using sympy expressions and solve them using interfaces to third-party optimization software (e.g. GLPK).
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pypi: plater
Easily create a starter file template for different project
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pypi: hyssop
component-based project hierarchy and utilities
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pypi: icy
data wrangling glue code
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pypi: idr
Image Data Repository access library
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cran: sketch
Interactive Sketches
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pypi: snapp
Python framework for building command line applications.
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pypi: rad
Roman Attribute Dictionary
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pypi: pygo
Needed to be installed to use the GO pygo package which allows calling python functions from GO lang
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pypi: PyFraME
PyFraME: Python framework for Fragment-based Multiscale Embedding
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pypi: sun
Tray notification applet for informing about package updates in Slackware
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pypi: support
An evented server framework designed for building scalable and introspectable services. Built at PayPal, based on gevent.
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pypi: svmlight
Interface to Thorsten Joachims' SVM-Light
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pypi: ppca
Probabilistic PCA
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pypi: spartan
Distributed Numpy-like arrays.
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pypi: Sympal
Basic end user Sympa listserv management with Python requests
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pypi: Symple
Simple Automatic Differentiation in Python
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pypi: treeCl
Phylogenetic Clustering Package
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