bioconductor: wiggleplotr
Make read coverage plots from BigWig files
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pypi: ga
A lightweight genetic algorithm library written in pure Python
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cran: rgrass7
Deprecated Interface Between GRASS Geographical Information System and R
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pypi: mergeit
GIT auto merge tool with branch dependencies, merge preprocessing and hooks
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pypi: rnacounter
Estimate abundances of genomic features from read densities
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pypi: classic
Salt Classic
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pypi: mata
Medieval Attack-Trade-Alliance Game Engine
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cran: semPLS
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pypi: repository
repository
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cran: heemod
Markov Models for Health Economic Evaluations
Papers that mentioned: 4
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cran: HGNChelper
Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols
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cran: peperr
Parallelised Estimation of Prediction Error
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pypi: pub
Python Utility Belt
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cran: windex
Analysing Convergent Evolution using the Wheatsheaf Index
Papers that mentioned: 4
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pypi: penelope
Penelope is a multi-tool for creating, editing and converting dictionaries, especially for eReader devices
Papers that mentioned: 4
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pypi: Binsanity
Method to cluster contigs based a biphasic method with coverage and composition
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pypi: long
Add a short description here!
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cran: sisVIVE
Some Invalid Some Valid Instrumental Variables Estimator
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cran: topologyGSA
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 4
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bioconductor: methylMnM
detect different methylation level (DMR)
Papers that mentioned: 4
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cran: FunChisq
Model-Free Functional Chi-Squared and Exact Tests
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cran: openVA
Automated Method for Verbal Autopsy
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pypi: TaskTracker
task management software used on coactivate.org
Papers that mentioned: 4
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cran: HLMdiag
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
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cran: optimization
Flexible Optimization of Complex Loss Functions with State and Parameter Space Constraints
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cran: pdist
Partitioned Distance Function
Papers that mentioned: 4
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pypi: charm
Import static websites on the file system into Plone.
Papers that mentioned: 4
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pypi: fragments
tool for diff-based templating / fragmentation control
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pypi: mu
Papers that mentioned: 4
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cran: irrCAC
Computing Chance-Corrected Agreement Coefficients (CAC)
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pypi: pyk
A simple, yet useful Kubernetes toolkit in Python
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cran: nparACT
Non-Parametric Measures of Actigraphy Data
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cran: Pareto
The Pareto, Piecewise Pareto and Generalized Pareto Distribution
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pypi: ethereum
Next generation cryptocurrency network
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pypi: cypher
Neo4j Cypher compiler for building domain-specific APIs
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pypi: reporter
Flexible text extraction from HTML in Python.
Papers that mentioned: 4
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cran: mcclust
Process an MCMC Sample of Clusterings
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pypi: outfit
Tidy up your machine learning experiments
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pypi: ubuntu
Python for iran.
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pypi: selection
API to extract content from HTML & XML documents
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pypi: workstation
An approach to Immutable Workstations on various hosts
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pypi: vibe
Python Package for Vibe, Fastest way to know everything about your contacts
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pypi: HomeLab
Smart Home Security Platform
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cran: lle
Locally linear embedding
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pypi: dolfin-adjoint
High-level automatic differentiation library for FEniCS.
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pypi: pmc
A module to control the mplayer
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pypi: MethylPurify
Methylation subclone detection
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pypi: ecopy
EcoPy: Ecological Data Analysis in Python
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pypi: Firework
Papers that mentioned: 4
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pypi: unity
Unity autopilot tests.
Papers that mentioned: 4
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cran: mQTL
Metabolomic Quantitative Trait Locus Mapping
Papers that mentioned: 4
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pypi: histogram
histogram: fundamental data object for scientific data reduction and analysis
Papers that mentioned: 4
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pypi: heat
A framework for high-performance data analytics and machine learning.
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cran: RItools
Randomization Inference Tools
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pypi: ud
A simple Urban Dictionary wrapper.
Papers that mentioned: 4
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pypi: edit
Papers that mentioned: 4
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cran: mpath
Regularized Linear Models
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cran: tsDyn
Nonlinear Time Series Models with Regime Switching
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pypi: RIFT
RIFT parameter estimation pipeline. Note branch used is temp-RIT-Tides-port_python3_restructure_package (which will become master shortly)!
Papers that mentioned: 4
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cran: PhyloMeasures
Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures
Papers that mentioned: 4
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bioconductor: RareVariantVis
A suite for analysis of rare genomic variants in whole genome sequencing data
Papers that mentioned: 4
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cran: yaImpute
Nearest Neighbor Observation Imputation and Evaluation Tools
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cran: parallelDist
Parallel Distance Matrix Computation using Multiple Threads
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pypi: PuLP
PuLP is an LP modeler written in python. PuLP can generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems.
Papers that mentioned: 4
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cran: rmutil
Utilities for Nonlinear Regression and Repeated Measurements Models
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pypi: opensim
Wrapper for the OpenSim musculoskeletal modeling and simulation library
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pypi: PPAP
hogehoge
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pypi: PyOpenWorm
A Python library for working with OpenWorm data and models
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pypi: pycircstat
Toolbox for circular statistics with Python
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pypi: simulations
simulation functions
Papers that mentioned: 4
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cran: altair
Interface to 'Altair'
Papers that mentioned: 4
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cran: miscTools
Miscellaneous Tools and Utilities
Papers that mentioned: 4
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cran: rkt
Mann-Kendall Test, Seasonal and Regional Kendall Tests
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cran: rsnps
Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web
Papers that mentioned: 4
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pypi: mip
Python tools for Modeling and Solving Mixed-Integer Linear Programs (MIPs)
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pypi: sa
Python split annotations package
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pypi: mir_eval
Common metrics for common audio/music processing tasks.
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pypi: sampling
Randomly sample iterables
Papers that mentioned: 4
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bioconductor: CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing
Papers that mentioned: 4
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pypi: cloc
Command Line Object Chaining (cloc) - Modern cli framework for simple and complex cli applications
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cran: AmpGram
Prediction of Antimicrobial Peptides
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Bayesian Designs for Early Phase Clinical Trials
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cran: aniDom
Inferring Dominance Hierarchies and Estimating Uncertainty
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bioconductor: ddCt
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
Papers that mentioned: 4
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pypi: eSim
E-sim python library
Papers that mentioned: 4
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bioconductor: MOSim
Multi-Omics Simulation (MOSim)
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cran: RUnit
R Unit Test Framework
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cran: astsa
Applied Statistical Time Series Analysis
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cran: saemix
Stochastic Approximation Expectation Maximization (SAEM) Algorithm
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cran: BayesLogit
PolyaGamma Sampling
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bioconductor: muscat
Multi-sample multi-group scRNA-seq data analysis tools
Papers that mentioned: 4
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pypi: gof
a little fun with Conway's Game Of Life
Papers that mentioned: 4
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pypi: clustergrammer
A python module for the Clustergrammer visualization project
Papers that mentioned: 4
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bioconductor: mzID
An mzIdentML parser for R
Papers that mentioned: 4
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bioconductor: NanoStringQCPro
Quality metrics and data processing methods for NanoString mRNA gene expression data
Papers that mentioned: 4
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cran: bupaR
Business Process Analysis in R
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pypi: mlt
Machine Learning Container Templates
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cran: clusrank
Wilcoxon Rank Tests for Clustered Data
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cran: emdist
Earth Mover's Distance
Papers that mentioned: 4
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cran: CMF
Collective Matrix Factorization
Papers that mentioned: 4
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