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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: cran: pagoda2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pagoda2

Single Cell Analysis and Differential Expression
12 versions
Latest release: almost 2 years ago
3 dependent packages
725 downloads last month

Enhanced Analysis
Educational Contributors: [email protected] [email protected] [email protected]
Repository Activity:
Repository Owner: Kharchenko Lab (organization) Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +14 Science terms in README
    7 scientific terms found in README
Penalties:
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
Very Likely Science (100)

Papers Mentioning pagoda2 4

10.7554/eLife.52690
Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta
Cited by: 28
Author(s): Eric Engelbrecht, Michel V. Levesque, Liqun He, Michael Vanlandewijck, Anja Nitzsche, Hira Niazi, Andrew Kuo, Sasha A Singh, Masamichi Aikawa, Kristina M. Holton, Richard L. Proia, Mari Kono, William T. Pu, Eric Camerer, Christer Betsholtz, Timothy Hla
Software Mentions: 8
Published: over 5 years ago
10.15252/embj.2020107100
<i>De novo</i> DNA methylation controls neuronal maturation during adult hippocampal neurogenesis
Cited by: 17
Author(s): Sara Zocher, Rupert W. Overall, Gabriel Berdugo-Vega, Nicole Rund, Anne Karasinsky, Vijay S. Adusumilli, Christina Steinhauer, Sina Scheibenstock, Kristian Händler, Joachim L. Schultze, Federico Calegari, Gerd Kempermann
Software Mentions: 6
Published: almost 4 years ago
10.3390/genes11070792
Integrating Deep Supervised, Self-Supervised and Unsupervised Learning for Single-Cell RNA-seq Clustering and Annotation
Cited by: 21
Author(s): Liang Chen, Yuyao Zhai, Qiuyan He, Weinan Wang, Minghua Deng
Software Mentions: 5
Published: about 5 years ago
10.1186/s13059-021-02267-5
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
Cited by: 255
Author(s): Harrison Specht, Edward Emmott, Aleksandra A. Petelski, R. Gray Huffman, David H. Perlman, Marco Serra, Peter V. Kharchenko, Antonius Koller, Nikolai Slavov
Software Mentions: 1
Published: over 4 years ago