pypi: PyClock
A digital clock for the terminal
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pypi: peakfit
PeakFit allow for lineshape fitting in pseudo-3D NMR spectra.
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pypi: Pythagoras
Simple and inexpensive way to create, deploy and run cloud-scale algorithms from within local Python scripts and notebooks.
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pypi: Nodes
Neuralnets-based Artificial Intelligence implementation
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cran: stream
Infrastructure for Data Stream Mining
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pypi: ode
Ordinary differential equation solver (numeric integration)
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cran: svd
Interfaces to Various State-of-Art SVD and Eigensolvers
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cran: wesanderson
A Wes Anderson Palette Generator
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pypi: libpcap
Python binding for the libpcap C library.
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cran: supclust
Supervised Clustering of Predictor Variables Such as Genes
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pypi: marginAlign
Toil-based functions for performing MinION sequence analysis
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pypi: pita
pita - pita improves transcript annotation
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pypi: Tabata
Programmatic, Template Driven Tableau Workbooks
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pypi: linsolve
high-level tools for linearizing and solving systems of equations
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cran: syn
Creates Synonyms From Target Words
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pypi: nvprof
NVIDIA Profier tools
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pypi: mahotas
Mahotas: Computer Vision Library
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pypi: simex
Ultra-simple human readable DSL for matching text.
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cran: tmaptools
Thematic Map Tools
Papers that mentioned: 5
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pypi: stream
Lazily-evaluated, parallelizable pipeline.
Papers that mentioned: 5
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pypi: syn
Python metaprogramming, typing, and compilation facilities
Papers that mentioned: 5
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cran: wgaim
Whole Genome Average Interval Mapping for QTL Detection and Estimation using ASReml-R
Papers that mentioned: 5
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pypi: topicmodels
A package for topic modelling in python.
Papers that mentioned: 5
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cran: sunburstR
Sunburst 'Htmlwidget'
Papers that mentioned: 5
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cran: xts
eXtensible Time Series
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pypi: Spray
A simple site server with builtin Jade support
Papers that mentioned: 5
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pypi: pystan
Python interface to Stan, a package for Bayesian inference
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pypi: yoga
Yummy Optimizer for Gorgeous Assets
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pypi: pomegranate
A PyTorch implementation of probabilistic models.
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pypi: pycortex
Python Cortical mapping software for fMRI data
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pypi: pftools
A Python package creating an interface with the ParFlow hydrologic model.
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pypi: Maga
A DHT crawler framework using asyncio.
Papers that mentioned: 5
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pypi: osmnx
Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap
Papers that mentioned: 5
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pypi: py2exe
Build standalone executables for Windows
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pypi: DSGRN
DSGRN (Dynamic Signatures Generated by Regulatory Networks)
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pypi: SDD
lightweight video detection
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cran: batman
Convert Categorical Representations of Logicals to Actual Logicals
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cran: bayespref
Hierarchical Bayesian analysis of ecological count data
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bioconductor: CNORode
ODE add-on to CellNOptR
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pypi: graphml
TBD
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cran: MDFS
MultiDimensional Feature Selection
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cran: norm
Analysis of Multivariate Normal Datasets with Missing Values
Papers that mentioned: 5
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pypi: SSO
Simplified Swarm Optimization
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pypi: Eman
A Python package to get weather reports for any location.
Papers that mentioned: 5
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pypi: pixy
Add colour and style to terminal text
Papers that mentioned: 5
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pypi: dabest
Data Analysis and Visualization using Bootstrap-Coupled Estimation.
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pypi: nanoscope
Python library for Bruker AFMi Nanoscope files
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pypi: ctc
ctc is a tool for collecting and processing historical EVM data
Papers that mentioned: 5
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bioconductor: gtrellis
Genome Level Trellis Layout
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pypi: graph-tool
An efficient python module for manipulation and statistical analysis of graphs.
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pypi: activity
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cran: KRLS
Kernel-Based Regularized Least Squares
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pypi: diva
Analytics dashboards made simple
Papers that mentioned: 5
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pypi: copula
A python library for sampling and generating new Data points by multivariate Gaussian copulas.
Papers that mentioned: 5
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pypi: Mule
Utilities for sharding test cases in BuildBot
Papers that mentioned: 5
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cran: bnstruct
Bayesian Network Structure Learning from Data with Missing Values
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cran: mma
Multiple Mediation Analysis
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pypi: LW
A Group of Packages by Luis Wilbert
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cran: BOG
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
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bioconductor: YAPSA
Yet Another Package for Signature Analysis
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cran: IsotopeR
Stable Isotope Mixing Model
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pypi: NanoComp
Comparing runs of Oxford Nanopore sequencing data and alignments
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pypi: mvnx
A lightweight commandline parser for the MVNX motion capture file format
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pypi: flirt
Wearable Data Processing Toolkit
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cran: dirmult
Estimation in Dirichlet-Multinomial Distribution
Papers that mentioned: 5
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cran: profvis
Interactive Visualizations for Profiling R Code
Papers that mentioned: 5
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pypi: tskit
The tree sequence toolkit.
Papers that mentioned: 5
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pypi: dendrogram
Module for draw data from dendrogram
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pypi: SDG
Synthetic Data Generation (SDG) for tabular data and time series
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bioconductor: CRImage
CRImage a package to classify cells and calculate tumour cellularity
Papers that mentioned: 5
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pypi: dtreeviz
A Python 3 library for sci-kit learn, XGBoost, LightGBM, Spark, and TensorFlow decision tree visualization
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cran: CircMLE
Maximum Likelihood Analysis of Circular Data
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cran: CNOGpro
Copy Numbers of Genes in prokaryotes
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pypi: factanal
A python wrapper for the R function factanal.
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pypi: libNeuroML
A Python library for working with NeuroML descriptions of neuronal models
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pypi: Doric
Doric is a lightweight library for implementing and extending progressive neural networks.
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cran: RLT
Reinforcement Learning Trees
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pypi: diana
Simple Dependency Injector for python
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cran: RIA
Radiomics Image Analysis Toolbox for Medial Images
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pypi: Cuckoo
Automated Malware Analysis System
Papers that mentioned: 5
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cran: penalized
L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model
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cran: GADMTools
Easy Use of 'GADM' Maps
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pypi: EasyCluster
A remote execution/clustering module for Python
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cran: admixr
An Interface for Running 'ADMIXTOOLS' Analyses
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cran: docopt
Command-Line Interface Specification Language
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pypi: Goodreads
Python wrapper for Goodreads API
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pypi: MyProxy
An asynchronous and configurable proxy server implemented in Python.
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pypi: msproteomicstools
Tools for MS-based proteomics
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cran: streamR
Access to Twitter Streaming API via R
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pypi: hctsa
Human-Centered TimeSeries Analysis Package
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cran: proj4
A simple interface to the PROJ.4 cartographic projections library
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pypi: information
Python library for knowledge
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cran: netgwas
Network-Based Genome Wide Association Studies
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cran: PResiduals
Probability-Scale Residuals and Residual Correlations
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pypi: confab
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cran: Rphylip
An R interface for PHYLIP
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pypi: Dora
Exploratory data analysis toolkit for Python
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pypi: ds
Simple data query language
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cran: speaq
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations
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cran: dglm
Double Generalized Linear Models
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