Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: marginAlign

https://packages.ecosyste.ms/registries/pypi.org/packages/marginAlign

Toil-based functions for performing MinION sequence analysis
9 versions
Latest release: almost 8 years ago
30 downloads last month

Papers Mentioning marginAlign 5

10.1371/journal.pone.0216709

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Cited by: 126
Author(s): Andrew Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson
Software Mentions: 4
Published: over 5 years ago

10.1093/bioinformatics/btv540

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
Cited by: 46
Author(s): Richard M. Leggett, Darren Heavens, Mario Cáccamo, Matt Clark, Robert P. Davey
Software Mentions: 2
Published: over 9 years ago

10.12688/f1000research.11354.1

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry
Cited by: 104
Author(s): Miten Jain, John R. Tyson, Matthew Loose, Camilla L. C. Ip, David Eccles, Justin O’Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen, MinION Analysis
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.7201.1

MinION Analysis and Reference Consortium: Phase 1 data release and analysis
Cited by: 266
Author(s): Camilla L. C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David Eccles, Vadim Zalunin, John Urban, Paolo Piazza, Rory Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O’Grady, Hugh E. Olsen, MinION Analysis
Software Mentions: 1
Published: about 9 years ago

10.1186/s13059-016-1103-0

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Cited by: 941
Author(s): Miten Jain, Hugh E. Olsen, Benedict Paten, Mark Akeson
Software Mentions: 1
Published: about 8 years ago