Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: marginAlign

https://packages.ecosyste.ms/registries/pypi.org/packages/marginAlign

Toil-based functions for performing MinION sequence analysis
9 versions
Latest release: over 8 years ago
30 downloads last month

Enhanced Analysis
Educational Contributors: [email protected] [email protected] [email protected] [email protected]
Repository Activity:
Repository Owner: Arthur Rand (user)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +80 Educational commit emails
    4 contributors with educational email addresses
  • +6 Science terms in README
    3 scientific terms found in README
  • +20 DOI references
    2 DOI references found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
Very Likely Science (100)

Papers Mentioning marginAlign 5

10.1371/journal.pone.0216709
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Cited by: 126
Author(s): Andrew Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson
Software Mentions: 4
Published: about 6 years ago
10.1093/bioinformatics/btv540
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
Cited by: 46
Author(s): Richard M. Leggett, Darren Heavens, Mario Cáccamo, Matt Clark, Robert P. Davey
Software Mentions: 2
Published: almost 10 years ago
10.12688/f1000research.11354.1
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry
Cited by: 104
Author(s): Miten Jain, John R. Tyson, Matthew Loose, Camilla L. C. Ip, David Eccles, Justin O’Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen, MinION Analysis
Software Mentions: 2
Published: about 8 years ago
10.12688/f1000research.7201.1
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
Cited by: 266
Author(s): Camilla L. C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David Eccles, Vadim Zalunin, John Urban, Paolo Piazza, Rory Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O’Grady, Hugh E. Olsen, MinION Analysis
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13059-016-1103-0
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Cited by: 941
Author(s): Miten Jain, Hugh E. Olsen, Benedict Paten, Mark Akeson
Software Mentions: 1
Published: over 8 years ago