Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CNORode
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CNORode
ODE add-on to CellNOptR
1 version
Latest release: about 1 year ago
1 dependent package
25,253 downloads total
Papers Mentioning CNORode 5
10.1186/1752-0509-6-133
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalismsCited by: 182
Author(s): Camille Terfve, Thomas Cokelaer, David Henriques, Aidan MacNamara, Emanuel Gonçalvès, Melody K. Morris, Martijn P. van Iersel, Douglas A. Lauffenburger, Julio Sáez-Rodríguez
Software Mentions: 7
Published: about 12 years ago
10.15252/msb.20188664
Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapiesCited by: 37
Author(s): Federica Eduati, Patricia Jaaks, Jessica Wappler, Thorsten Cramer, Christoph A. Merten, Mathew J. Garnett, Julio Sáez-Rodríguez
Software Mentions: 4
Published: almost 5 years ago
10.1016/j.cels.2017.11.002
Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell LinesCited by: 18
Author(s): Peter Blattmann, David Henriques, Michael Zimmermann, Fabian Frommelt, Uwe Sauer, Julio Sáez-Rodríguez, Ruedi Aebersold
Software Mentions: 4
Published: about 7 years ago
10.1093/bioinformatics/btaa561
Converting networks to predictive logic models from perturbation signalling data with CellNOptCited by: 13
Author(s): Enio Gjerga, Panuwat Trairatphisan, Attila Gábor, Hermann Koch, Céline Chevalier, Franceco Ceccarelli, Aurélien Dugourd, Alexander Mitsos, Julio Sáez-Rodríguez
Software Mentions: 3
Published: over 4 years ago
10.15252/msb.20145112
Phosphoproteomic analyses reveal novel cross‐modulation mechanisms between two signaling pathways in yeastCited by: 38
Author(s): Stefania Vaga, Martí Bernardo-Faura, Thomas Cokelaer, Alessio Maiolica, Christopher A. Barnes, Ludovic Gillet, Björn Hegemann, Frank van Drogen, Hoda Sharifian, Edda Klipp, Matthias Peter, Julio Sáez-Rodríguez, Ruedi Aebersold
Software Mentions: 2
Published: about 10 years ago