Projects: pypi: NanoComp
https://packages.ecosyste.ms/registries/pypi.org/packages/NanoComp
Comparing runs of Oxford Nanopore sequencing data and alignments
71 versions
Latest release: about 2 years ago
258 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Wouter De Coster (user)
Bioinformatics postdoc using short and long read sequencing at Rademakers Lab and research associate for PromethION analysis Academic
Bioinformatics postdoc using short and long read sequencing at Rademakers Lab and research associate for PromethION analysis Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+8
Science terms in README
4 scientific terms found in README -
+6
Academic links
1 academic links found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning NanoComp 5
10.1093/bioinformatics/bty149
NanoPack: visualizing and processing long-read sequencing dataCited by: 1,423
Author(s): Wouter De Coster, Svenn D’Hert, Darrin T. Schultz, Marc Cruts, Christine Van Broeckhoven
Software Mentions: 18
Published: over 7 years ago
10.1534/g3.120.401550
Solyntus, the New Highly Contiguous Reference Genome for Potato (<i>Solanum tuberosum</i>)Cited by: 34
Author(s): Natascha van Lieshout, Ate van der Burgt, Michiel E. de Vries, Menno ter Maat, David Eickholt, Danny Esselink, Martijn van Kaauwen, Linda Kodde, Richard G. F. Visser, P. Lindhout, Richard Finkers
Software Mentions: 4
Published: almost 5 years ago
10.3390/genes11121444
Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human GenomesCited by: 6
Author(s): Nazeefa Fatima, Anna Petri, Ulf Gyllensten, Lars Feuk, Adam Ameur
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.6151
Rapid mitochondrial genome sequencing based on Oxford Nanopore Sequencing and a proxy for vertebrate species identificationCited by: 18
Author(s): Nicolás D. Franco‐Sierra, Juan F. Díaz‐Nieto
Software Mentions: 3
Published: over 5 years ago
10.1093/jxb/eraa263
Oxford Nanopore sequencing: new opportunities for plant genomics?Cited by: 42
Author(s): Kathryn Dumschott, Maximilian Schmidt, Harmeet Singh Chawla, Rod J. Snowdon, Björn Usadel
Software Mentions: 2
Published: about 5 years ago