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10.3390/microorganisms8101528

Metabolic Response of Faecalibacterium prausnitzii to Cell-Free Supernatants from Lactic Acid Bacteria
Cited by: 14
Author(s): Mathilde Lebas, Peggy Garault, Daniel Carrillo, Francisco M. Codoñer, Muriel Derrien
Software Mentions: 7
Published: about 4 years ago

10.3390/v13040550

Spatial Analysis of the 2017 Outbreak of Hemorrhagic Disease and Physiographic Region in the Eastern United States
Cited by: 7
Author(s): Christine L Casey, Stephen L. Rathbun, David E. Stallknecht, Mark G. Ruder
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: about 4 years ago

10.1186/s12874-019-0681-4

Machine learning in medicine: a practical introduction
Cited by: 526
Author(s): Jenni A. M. Sidey-Gibbons, Chris Sidey‐Gibbons
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0238405

Persistent El Niño driven shifts in marine cyanobacteria populations
Cited by: 7
Author(s): Alyse A. Larkin, Allison R. Moreno, Adam Fagan, Alyssa Fowlds, Alani Ruiz, Adam C. Martiny
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-021-84511-3

Scale-dependent contribution of host-specificity and environmental factors to wood-boring longhorn beetle community assemblage in SW China
Cited by: 1
Author(s): Fa Luo, Ling‐Zeng Meng, S. Tharanga Aluthwattha, Mei-Ying Lin, Andreas Weigel, Wenfu Zhang, Jizhen Qi, Jin Chen
Software Mentions: 7
Published: over 3 years ago

10.1038/srep29532

Delineation of autoantibody repertoire through differential proteogenomics in hepatitis C virus-induced cryoglobulinemia
Cited by: 12
Author(s): Masato Ogishi, Hiroshi Yotsuyanagi, Kyoji Moriya, Kazuhiko Koike
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2021.702695

Identification and Elucidation of the Protective isomiRs in Lung Cancer Patient Prognosis
Cited by: 1
Author(s): Fu-Mei Hsieh, Su-Ting Lai, Ming-Fong Wu, Chen-Ching Lin
Software Mentions: 7
Published: about 3 years ago

10.1038/srep22164

Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study
Cited by: 201
Author(s): Toru Takeshita, Shinya Kageyama, Michiko Furuta, Hideyuki Tsuboi, Kenji Takeuchi, Yukie Shibata, Yoshihiro Shimazaki, Sumio Akifusa, Toshiharu Ninomiya, Yutaka Kiyohara, Yoshihisa Yamashita
Software Mentions: 7
Published: over 8 years ago

10.1098/rsos.210172

Assessing urinary odours across the oestrous cycle in a mouse model using portable and benchtop gas chromatography-mass spectrometry
Cited by: 4
Author(s): Jia Tang, Alice C. Poirier, Gwen Duytschaever, Laís Alves Antonio Moreira, Omer Nevo, Amanda D. Melin
Software Mentions: 7
Published: about 3 years ago

10.1016/j.diabres.2019.01.008

Differential methylation of the type 2 diabetes susceptibility locus KCNQ1 is associated with insulin sensitivity and is predicted by CpG site specific genetic variation
Cited by: 14
Author(s): Ushma Jaykamal Shah, Wenting Xie, Allan Flyvbjerg, John J. Nolan, Kurt Højlund, Mark Walker, Caroline L Relton, Hannah R Elliott
Software Mentions: 7
Published: almost 6 years ago

10.1093/conphys/coz002

Artificial light at night disturbs the activity and energy allocation of the common toad during the breeding period
Cited by: 28
Author(s): Morgane Touzot, Loïc Teulier, Thierry Lengagne, Jean Secondi, Marc Théry, Paul-Antoine Libourel, Ludovic Guillard, Nathalie Mondy
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12859-015-0830-7

DHOEM: a statistical simulation software for simulating new markers in real SNP marker data
Cited by: 0
Author(s): Laval Jacquin, Tuong-Vi Cao, Cécile Grenier, Nourollah Ahmadi
Software Mentions: 7
Published: almost 9 years ago

10.3389/fneur.2019.01117

Normative Data and Minimally Detectable Change for Inner Retinal Layer Thicknesses Using a Semi-automated OCT Image Segmentation Pipeline
Cited by: 33
Author(s): Seyedamirhosein Motamedi, K. Gawlik, Noah Ayadi, Hanna Zimmermann, Susanna Asseyer, Charlotte Bereuter, Janine Mikolajczak, Friedemann Paul, Ella-Maria Kadas, Alexander U. Brandt
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-020-03945-0

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes
Cited by: 1
Author(s): Bing Song, August E. Woerner, John V. Planz
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: about 5 years ago

10.1186/s13148-018-0510-3

Multifactorial analysis of the stochastic epigenetic variability in cord blood confirmed an impact of common behavioral and environmental factors but not of in vitro conception
Cited by: 25
Author(s): Davide Gentilini, Edgardo Somigliana, Luca Pagliardini, Elisa Rabellotti, Paolo Garagnani, Luisa Bernardinelli, Enrico Papaleo, Massimo Candiani, Anna Maria Di Blasio, Paola Viganò
Software Mentions: 7
Published: over 6 years ago

10.3390/jpm11060484

A System Pharmacology Multi-Omics Approach toward Uncontrolled Pediatric Asthma
Cited by: 11
Author(s): Mahmoud I. Abdel‐Aziz, Anne H. Neerincx, Susanne Vijverberg, Simone Hashimoto, Paul Brinkman, Mario Gorenjak, Antoaneta A. Toncheva, Susanne Harner, Susanne Brandstetter, Christine Wolff, Javier Pérez-García, Anna M. Hedman, Catarina Almqvist, Paula Corcuera, Javier Korta‐Murua, Olaia Sardón-Prado, Maria Pino‐Yanes, Uroš Potočnik, Michael Kabesch, Aletta D. Kraneveld, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 7
Published: over 3 years ago

10.3390/brainsci11020231

Infant Eye Gaze While Viewing Dynamic Faces
Cited by: 5
Author(s): Lisa M. Oakes, Michaela C. DeBolt, Aaron G. Beckner, Annika T. Voss, Lisa Cantrell
Software Mentions: 7
Published: almost 4 years ago

10.1016/j.celrep.2019.12.057

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
Cited by: 118
Author(s): James Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noèlia Díaz, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinić, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, K Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0179956

Author contributions to ecological publications: What does it mean to be an author in modern ecological research?
Cited by: 17
Author(s): John M. Logan, Sarah B. Bean, Alan A. Myers
Software Mentions: 7
Published: over 7 years ago

10.18632/aging.101356

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas
Cited by: 22
Author(s): Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean‐Charles Cadoret, Chrystelle Maric, Giuseppe Baldacci, Fabien Fauchereau
Software Mentions: 7
Published: almost 7 years ago

10.1186/s13059-020-01992-7

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
Cited by: 5
Author(s): Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao, Kaifu Chen
Software Mentions: 7
Published: over 4 years ago

10.1093/molbev/msaa122

The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
Cited by: 29
Author(s): Emile Gluck‐Thaler, Sajeet Haridas, Manfred Binder, Igor V. Grigoriev, Pedro W. Crous, Joseph W. Spatafora, Kathryn E. Bushley, Jason C. Slot
Software Mentions: 7
Published: over 4 years ago

10.1186/s12983-019-0309-x

Mining morphometrics and age from past survey photographs
Cited by: 3
Author(s): Caitlin Black, Hannah S. Mumby, Michelle Henley
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0243672

Characterisation and chemometric evaluation of 17 elements in ten seaweed species from Greenland
Cited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0127653

Anatomical Network Analysis Shows Decoupling of Modular Lability and Complexity in the Evolution of the Primate Skull
Cited by: 32
Author(s): Borja Esteve‐Altava, Julia C. Boughner, Rui Diogo, Brian Villmoare, Diego Rasskin‐Gutman
Software Mentions: 7
Published: over 9 years ago

10.3389/fvets.2019.00499

Developing Diagnostic Frameworks in Veterinary Behavioral Medicine: Disambiguating Separation Related Problems in Dogs
Cited by: 25
Author(s): Luciana Santos de Assis, Raquel Matos, Thomas W. Pike, Ohp Burman, Daniel S. Mills
Software Mentions: 7
Published: almost 5 years ago

10.1534/g3.117.300479

Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture
Cited by: 13
Author(s): Duke Pauli, Gregory R. Ziegler, Min Ren, Matthew A. Jenks, Douglas J. Hunsaker, Min Zhang, Ivan Baxter, Michael A. Gore
Software Mentions: 7
Published: over 6 years ago

10.1128/mBio.03601-20

Ketogenic Diets Induced Glucose Intolerance and Lipid Accumulation in Mice with Alterations in Gut Microbiota and Metabolites
Cited by: 15
Author(s): Yue Li, Yifan Yang, Jing Zhang, Tianyi Jiang, Ziyi Zhang, Zhiyi Wang, Mengxue Gong, Liping Zhao, Chenhong Zhang
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0048365

Molecular and Immunological Characterization of Gluten Proteins Isolated from Oat Cultivars That Differ in Toxicity for Celiac Disease
Cited by: 67
Author(s): Ana Real, Isabel Comino, Laura de Lorenzo, Francisco Merchán, Javier Gil-Humanes, María J. Giménez, Miguel Ángel López-Casado, Ma Isabel Torres, Ángel Cebolla, Carolina Sousa, Francisco Barro, Fernando Pistón
Software Mentions: 7
Published: almost 12 years ago

10.1007/s10021-018-0275-8

Vertical Redistribution of Soil Organic Carbon Pools After Twenty Years of Nitrogen Addition in Two Temperate Coniferous Forests
Cited by: 21
Author(s): Stefan J. Forstner, Viktoria Wechselberger, Stefanie Müller, Katharina M. Keibinger, Eugenio Díaz‐Pinés, Wolfgang Wanek, Patrick Scheppi, Frank Hagedorn, Per Gundersen, Michael Tatzber, Martin H. Gerzabek, Sophie Zechmeister‐Boltenstern
Software Mentions: 7
Published: over 6 years ago

10.3389/fnsys.2021.692152

Age-Related Variations in Regional White Matter Volumetry and Microstructure During the Post-adolescence Period: A Cross-Sectional Study of a Cohort of 1,713 University Students
Cited by: 4
Author(s): Ami Tsuchida, Alexandre Laurent, Fabrice Crivello, Laurent Petit, Antonietta Pepe, Naka Beguedou, Stéphanie Debette, Christophe Tzourio, Bernard Mazoyer
Software Mentions: 7
Published: over 3 years ago

10.1186/s13148-019-0651-z

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression
Cited by: 18
Author(s): Shivani Kamdar, Ruth Isserlin, Theodorus van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil Fleshner, Bharati Bapat
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 4 years ago

10.3389/fpsyg.2020.00905

From Abstract Symbols to Emotional (In-)Sights: An Eye Tracking Study on the Effects of Emotional Vignettes and Pictures
Cited by: 5
Author(s): Franziska Usée, Arthur Jacobs, Jana Lüdtke
Software Mentions: 6
Published: over 4 years ago

10.1186/s12864-017-3683-9

Reduced changes in protein compared to mRNA levels across non-proliferating tissues
Cited by: 72
Author(s): Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar-Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham, Ron Shamir
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0187612

Association of high-risk sexual behaviour with diversity of the vaginal microbiota and abundance of Lactobacillus
Cited by: 39
Author(s): Jocelyn M. Wessels, Julie Lajoie, Danielle Vitali, Kenneth Omollo, Joshua Kimani, Julius Oyugi, Juliana Cheruiyot, Murungaru Kimani, Joseph Maina Mungai, Maureen Akolo, Jennifer C. Stearns, Michael G. Surette, Keith R. Fowke, Charu Kaushic
Software Mentions: 6
Published: about 7 years ago

10.1186/s12864-016-3020-8

RNA-Seq analysis of seasonal and individual variation in blood transcriptomes of healthy managed bottlenose dolphins
Cited by: 27
Author(s): Jeanine S. Morey, Marion G. Neely, Denise Lunardi, Paul E. Anderson, Lori H. Schwacke, Michelle R. Campbell, Frances M. Van Dolah
Software Mentions: 6
Published: about 8 years ago

10.3389/fpls.2020.00803

Slug Feeding Triggers Dynamic Metabolomic and Transcriptomic Responses Leading to Induced Resistance in Solanum dulcamara
Cited by: 3
Author(s): Onno W Calf, Tobias Lortzing, Alexander Weinhold, Yvonne Poeschl, Janny L. Peters, Heidrun Huber, Anke Steppuhn, Nicole M. van Dam
Software Mentions: 6
Published: over 4 years ago

10.3389/fpls.2020.00054

Winter Wheat Yield Response to Plant Density as a Function of Yield Environment and Tillering Potential: A Review and Field Studies
Cited by: 58
Author(s): Leonardo M. Bastos, Walter D. Carciochi, Romulo P. Lollato, B. R. Jaenisch, Caio R Rezende, Raíssa Schwalbert, P. V. Vara Prasad, Guorong Zhang, Allan K. Fritz, Chris Foster, Yancy Wright, S. Emory Young, Pauley R. Bradley, Ignacio A. Ciampitti
Software Mentions: 6
Published: over 4 years ago

10.3389/fpls.2018.00836

Divergent Secondary Metabolites and Habitat Filtering Both Contribute to Tree Species Coexistence in the Peruvian Amazon
Cited by: 21
Author(s): Jason Vleminckx, Diego Salazar, Claire Fortunel, Italo Mesones, Nállarett Dávila, John Lokvam, Krista Beckley, Christopher Baraloto, Paul V. A. Fine
Software Mentions: 6
Published: over 6 years ago

10.3389/fpls.2018.00599

Landscape- and Local-Scale Actions Are Essential to Conserve Regional Macrophyte Biodiversity
Cited by: 4
Author(s): Munemitsu Akasaka, Shinsuke Higuchi, Noriko Takamura
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0158117

Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows
Cited by: 208
Author(s): D. M. Hicks, Pierre Ouvrard, Katherine C. R. Baldock, Mathilde Baude, Mark A. Goddard, William E. Kunin, Nadine Mitschunas, Jane Memmott, Helen Morse, Maria Nikolitsi, Lynne M. Osgathorpe, Simon G. Potts, Kirsty M. Robertson, Anna Scott, Frazer Sinclair, Duncan B. Westbury, Graham N. Stone
Software Mentions: 6
Published: over 8 years ago

10.3390/ani10111985

Is Whip Use Important to Thoroughbred Racing Integrity? What Stewards’ Reports Reveal about Fairness to Punters, Jockeys and Horses
Cited by: 8
Author(s): Kirrilly Thompson, Phil McManus, Dene Stansall, Bethany Wilson, Paul D. McGreevy
Software Mentions: 6
Published: about 4 years ago

10.3389/fpls.2020.544435

Respiratory CO2 Combined With a Blend of Volatiles Emitted by Endophytic Serendipita Strains Strongly Stimulate Growth of Arabidopsis Implicating Auxin and Cytokinin Signaling
Cited by: 15
Author(s): Jolien Venneman, Lore Vandermeersch, Christophe Walgraeve, Kris Audenaert, Maarten Ameye, Jan Verwaeren, Kathy Steppe, Herman Van Langenhove, Geert Haesaert, Danny Vereecke
Software Mentions: 6
Published: about 4 years ago

10.3389/fpls.2021.622043

Disentangling Environmental Effects on the Tree Species Abundance Distribution and Richness in a Subtropical Forest
Cited by: 9
Author(s): Feng Guo, Jihong Huang, Xu Yue, Junqing Li, Runguo Zang
Software Mentions: 6
Published: over 3 years ago

10.1016/j.lanepe.2021.100103

Impact of the COVID-19 pandemic and associated non-pharmaceutical interventions on other notifiable infectious diseases in Germany: An analysis of national surveillance data during week 1–2016 – week 32–2020
Cited by: 86
Author(s): Alexander Ullrich, Madlen Schranz, Ute Rexroth, Osamah Hamouda, Lars Schaade, Michaela Diercke, T. Sonia Boender
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0233372

Muscle transcriptome analysis identifies genes involved in ciliogenesis and the molecular cascade associated with intramuscular fat content in Large White heavy pigs
Cited by: 20
Author(s): Martina Zappaterra, Silvia Gioiosa, Giovanni Chillemi, Paolo Zambonelli, Roberta Davoli
Software Mentions: 6
Published: over 4 years ago

10.3389/fpls.2021.715309

An Affordable Image-Analysis Platform to Accelerate Stomatal Phenotyping During Microscopic Observation
Cited by: 2
Author(s): Yosuke Toda, Toshiaki Tameshige, Masakazu Tomiyama, Toshinori Kinoshita, Kentaro Shimizu
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0207192

Mortality prediction in patients with isolated moderate and severe traumatic brain injury using machine learning models
Cited by: 66
Author(s): Cheng-Shyuan Rau, Pao‐Jen Kuo, Peng‐Chen Chien, Chun-Ying Huang, Hsiao-Yun Hsieh, Ching‐Hua Hsieh
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0055674

Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology
Cited by: 9
Author(s): Katja C. Seltmann, Zsolt Pénzes, Matthew Yoder, Matthew A. Bertone, Andrew R. Deans
Software Mentions: 6
Published: almost 12 years ago

10.3390/ani10010113

Exploring the Use of a Qualitative Behavioural Assessment Approach to Assess Emotional State of Calves in Rodeos
Cited by: 6
Author(s): Sally Rizzuto, Di Evans, Bethany Wilson, Paul D. McGreevy
Software Mentions: 6
Published: almost 5 years ago

10.3389/fonc.2021.697198

A Pyroptosis-Related Gene Signature for Predicting Survival in Glioblastoma
Cited by: 40
Author(s): Xinyu Li, Luyu Zhang, Xueyuan Li, Xitao Yang, Lixin Su
Software Mentions: 6
Published: over 3 years ago

10.3389/fped.2021.645060

Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit
Cited by: 12
Author(s): Jing Liu, Mingbang Wang, Wei-Ming Chen, Jing Ma, Yi Peng, Mingzhi Zhang, Chuanqing Wang, Gangfeng Yan, Guoping Li
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-016-1083-9

flowVS: channel-specific variance stabilization in flow cytometry
Cited by: 15
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 6
Published: over 8 years ago

10.1186/s12864-019-5453-3

Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan
Cited by: 15
Author(s): Maribet Gamboa, Kozo Watanabe
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0090898

Reduced-Gliadin Wheat Bread: An Alternative to the Gluten-Free Diet for Consumers Suffering Gluten-Related Pathologies
Cited by: 79
Author(s): Javier Gil-Humanes, Fernando Pistón, Rossana Altamirano-Fortoul, Ana Real, Isabel Comino, Carolina Sousa, Cristina M. Rosell, Francisco Barro
Software Mentions: 6
Published: over 10 years ago

10.1186/s12864-019-6061-y

Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
Cited by: 12
Author(s): Jim A. Mossman, Leann M. Biancani, David M. Rand
Software Mentions: 6
Published: about 5 years ago

10.3389/fnut.2019.00045

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: over 3 years ago

10.3389/fnins.2019.00392

Data-Driven Analysis of Age, Sex, and Tissue Effects on Gene Expression Variability in Alzheimer's Disease
Cited by: 19
Author(s): Lavida R. K. Brooks, George I. Mias
Software Mentions: 6
Published: over 5 years ago

10.1016/j.isci.2021.102452

Scaling relation between genome length and particle size of viruses provides insights into viral life history
Cited by: 8
Author(s): Harshali V. Chaudhari, Mandar M. Inamdar, Kiran Kondabagil
Software Mentions: 6
Published: over 3 years ago

10.3389/fnins.2018.00368

From ERPs to MVPA Using the Amsterdam Decoding and Modeling Toolbox (ADAM)
Cited by: 94
Author(s): Johannes J. Fahrenfort, Joram van Driel, Simon van Gaal, Christian N. L. Olivers
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0179180

Rigid geometry solves “curse of dimensionality” effects in clustering methods: An application to omics data
Cited by: 12
Author(s): Shun Adachi
Software Mentions: 6
Published: over 7 years ago

10.3389/fnins.2017.00363

The Role of the Interplay between Stimulus Type and Timing in Explaining BCI-Illiteracy for Visual P300-Based Brain-Computer Interfaces
Cited by: 12
Author(s): Roberta Carabalona
Software Mentions: 6
Published: over 7 years ago

10.18632/oncotarget.10962

Epigenetic reprogramming and aberrant expression of PRAME are associated with increased metastatic risk in Class 1 and Class 2 uveal melanomas
Cited by: 85
Author(s): Matthew G. Field, Michael A. Durante, Christina L. Decatur, Berçin Tarlan, Kristen M. Oelschlager, John F. Stone, Jeffim N. Kuznetsov, Anne M. Bowcock, Stefan Kurtenbach, J. William Harbour
Software Mentions: 6
Published: over 8 years ago

10.3389/fmolb.2021.636991

Identifying Dendritic Cell–Related Genes Through a Co-Expression Network to Construct a 12-Gene Risk-Scoring Model for Predicting Hepatocellular Carcinoma Prognosis
Cited by: 7
Author(s): Chao-Yuan Huang, Xiaotao Jiang, Yuancheng Huang, Lina Zhao, Peiwu Li, Fengbin Liu
Software Mentions: 6
Published: over 3 years ago

10.1186/1471-2105-15-138

An R package that automatically collects and archives details for reproducible computing
Cited by: 15
Author(s): Zhifa Liu, Stanley Pounds
Software Mentions: 6
Published: over 10 years ago

10.2196/20185

Mental Health and Behavior of College Students During the Early Phases of the COVID-19 Pandemic: Longitudinal Smartphone and Ecological Momentary Assessment Study
Cited by: 443
Author(s): Jeremy F. Huckins, Alex W DaSilva, Weichen Wang, Elin Hedlund, Courtney Rogers, Subigya Nepal, Jialing Wu, Mikio Obuchi, Eilis I Murphy, Meghan L. Meyer, Dylan D. Wagner, Paul E. Holtzheimer, Andrew T. Campbell
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-021-04339-6

Predicting chemotherapy response using a variational autoencoder approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey
Software Mentions: 6
Published: about 3 years ago

10.3390/biomedicines9020206

Zoom in on Antibody Aggregates: A Potential Pitfall in the Search of Rare EV Populations
Cited by: 1
Author(s): Rikke Wehner Rasmussen, Jaco Botha, Frederik Prip, Mathilde Sanden, Mads Nielsen, Aase Handberg
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: over 6 years ago

10.1155/2021/6635526

Construction and Validation of a Ferroptosis-Related Prognostic Model for Gastric Cancer
Cited by: 33
Author(s): Xiaotao Jiang, Qiaofeng Yan, Linling Xie, Shiqi Xu, Kailin Jiang, Jiahua Huang, Yi Wen, Yanhua Yan, Junhui Zheng, Shiyun Tang, Kechao Nie, Zhihua Zheng, Jinglin Pan, Peng Liu, Yuancheng Huang, Xingrui Yan, Yushan Zou, Xuan Chen, Fengbin Liu, Peiwu Li, Kunhai Zhuang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12862-020-01645-0

What makes a fang? Phylogenetic and ecological controls on tooth evolution in rear-fanged snakes
Cited by: 20
Author(s): Erin P. Westeen, Andrew M. Durso, Michael C. Gründler, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0251653

Minimally invasive brain injections for viral-mediated transgenesis: New tools for behavioral genetics in sticklebacks
Cited by: 2
Author(s): Noelle James, Alison M. Bell
Software Mentions: 6
Published: over 3 years ago

10.1186/s13075-020-02403-9

Association study between immune-related miRNAs and mixed connective tissue disease
Cited by: 1
Author(s): Barbara Stypińska, Aleksandra Lewandowska, Anna Felis-Giemza, Marzena Olesińska, Agnieszka Paradowska‐Gorycka
Software Mentions: 6
Published: almost 4 years ago

10.1002/evl3.80

Lineages evolved under stronger sexual selection show superior ability to invade conspecific competitor populations
Cited by: 10
Author(s): Joanne L. Godwin, Lewis G. Spurgin, Łukasz Michalczyk, Oliver Y. Martin, Alyson J. Lumley, Tracey Chapman, Matthew J. G. Gage
Software Mentions: 6
Published: about 6 years ago

10.1002/evl3.13

Experimental evolution reveals that sperm competition intensity selects for longer, more costly sperm
Cited by: 44
Author(s): Joanne L. Godwin, Ramakrishnan Vasudeva, Łukasz Michalczyk, Oliver Y. Martin, Alyson J. Lumley, Tracey Chapman, Matthew J. G. Gage
Software Mentions: 6
Published: over 7 years ago

10.1186/s13062-017-0193-2

On the global CRISPR array behavior in class I systems
Cited by: 11
Author(s): Alice Toms, Rodolphe Barrangou
Software Mentions: 6
Published: about 7 years ago

10.1128/mSphere.00843-20

Pseudomonas aeruginosa Volatilome Characteristics and Adaptations in Chronic Cystic Fibrosis Lung Infections
Cited by: 10
Author(s): Thomas J. Davis, Ava V. Karanjia, Charity N. Bhebhe, Sarah B. West, Matthew Richardson, Heather D. Bean
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0246663

An open-sourced, web-based application to analyze weekly excess mortality based on the Short-term Mortality Fluctuations data series
Cited by: 38
Author(s): László Németh, Dmitri A. Jdanov, Vladimir M. Shkolnikov
Software Mentions: 6
Published: almost 4 years ago

10.1111/eva.12643

Fitness costs of key point mutations that underlie acaricide target‐site resistance in the two‐spotted spider mite Tetranychus urticae
Cited by: 38
Author(s): Sabina Bajda, Maria Riga, Nicky Wybouw, Stavrini Papadaki, Eleni Ouranou, Seyedeh Masoumeh Fotoukkiaii, John Vontas, Thomas Van Leeuwen
Software Mentions: 6
Published: over 6 years ago

10.3389/fcimb.2018.00020

Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals
Cited by: 20
Author(s): Lisandra Aguilar-Bultet, Pamela Nicholson, Lorenz Rychener, Margaux Dreyer, Bulent Gözel, Francesco C. Origgi, Anna Oevermann, Joachim Frey, Laurent Falquet
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0232648

Climatic drivers of Verticillium dahliae occurrence in Mediterranean olive-growing areas of southern Spain
Cited by: 1
Author(s): Juan M. Requena‐Mullor, José Manuel Garcı́a-Garrido, Pilar Garcı́a Garcı́a, Estefanı́a Rodrı́guez
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41426-018-0204-0

A viral race for primacy: co-infection of a natural pair of low and highly pathogenic H7N7 avian influenza viruses in chickens and embryonated chicken eggs
Cited by: 19
Author(s): Annika Graaf, Reiner Ulrich, Pavlo Maksimov, David Scheibner, Susanne Koethe, Elsayed M. Abdelwhab, Thomas C. Mettenleiter, Martin Beer, Timm Harder
Software Mentions: 6
Published: almost 6 years ago

10.1128/mSphere.01261-20

Predominance of Atopobium vaginae at Midtrimester: a Potential Indicator of Preterm Birth Risk in a Nigerian Cohort
Cited by: 13
Author(s): Nkechi Martina Odogwu, Jun Chen, Chinedum Amara Onebunne, Patricio Jeraldo, Lu Yang, Stephen Johnson, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 6
Published: over 3 years ago

10.3390/toxins11110624

Analysis of the Use of Cylindrospermopsin and/or Microcystin-Contaminated Water in the Growth, Mineral Content, and Contamination of Spinacia oleracea and Lactuca sativa
Cited by: 22
Author(s): María Llana-Ruiz-Cabello, Ángeles Jos, Ana M. Cameán, Flávio Luís de Oliveira, Aldo Barreiro Felpeto, J.A.T. Machado, Joana Azevedo, Edgar Pinto, Agostinho Almeida, Alexandre Campos, Vítor Vasconcelos, Marisa Freitas
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.6182

Isotopic niche differs between seal and fish‐eating killer whales ( Orcinus orca ) in northern Norway
Cited by: 24
Author(s): Eve Jourdain, Clare Andvik, Richard Karoliussen, Anders Ruus, Dag Vongraven, Katrine Borgå
Software Mentions: 6
Published: over 4 years ago

10.7717/peerj.11119

Commercial arbuscular mycorrhizal fungal inoculant failed to establish in a vineyard despite priority advantage
Cited by: 12
Author(s): Corrina Thomsen, Laura Loverock, Vasilis Kokkoris, Taylor Holland, Pat Bowen, Miranda M. Hart
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0226813

An investigation of transportation practices in an Ontario swine system using descriptive network analysis
Cited by: 5
Author(s): Dylan John Melmer, Terri L. O’Sullivan, Amy L. Greer, Zvonimir Poljak
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.9209

Estimating food resource availability in arid environments with Sentinel 2 satellite imagery
Cited by: 4
Author(s): Caterina Funghi, René H. J. Heim, Wiebke Schuett, Simon C. Griffith, Jens Oldeland
Software Mentions: 6
Published: over 4 years ago

10.1186/s12885-021-08341-2

Identification of the prognostic value of ferroptosis-related gene signature in breast cancer patients
Cited by: 55
Author(s): Ding Wang, Guodong Wei, Jiangwei Ma, Shuai Cheng, Longyuan Jia, Xinyue Song, Ming Zhang, Mingyi Ju, Lin Wang, Lin Zhao, Shijie Xin
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.2206

Are the metabolomic responses to folivory of closely related plant species linked to macroevolutionary and plant-folivore coevolutionary processes?
Cited by: 14
Author(s): Albert Rivas‐Ubach, José A. Hódar, Jordi Sardans, Jennifer Kyle, Young Mo Kim, Michal Oravec, Otmar Urban, Alex Guenther, Josep Peñuelas
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-96987-0

Assessing the extent and timing of chemosensory impairments during COVID-19 pandemic
Cited by: 21
Author(s): Cinzia Cecchetto, Antonella Di Pizio, Federica Genovese, Orietta Calcinoni, Alberto Macchi, Andreas Dunkel, Kathrin Ohla, Sara Spinelli, Michael C. Farruggia, Paule V. Joseph, Anna Menini, Elena Cantone, Caterina Dinnella, Maria Paola Cecchini, Anna D’Errico, Carla Mucignat‐Caretta, Valentina Parma, Michele Dibattista
Software Mentions: 6
Published: about 3 years ago

10.1002/ece3.5819

Evolution of sexually dimorphic pheromone profiles coincides with increased number of male‐specific chemosensory organs in Drosophila prolongata
Cited by: 12
Author(s): Yige Luo, Yunwei Zhang, Jean‐Pierre Farine, Jean‐François Ferveur, Santiago R. Ramírez, Artyom Kopp
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms8091367

Lifestyle, Lineage, and Geographical Origin Influence Temperature-Dependent Phenotypic Variation across Yeast Strains during Wine Fermentation
Cited by: 4
Author(s): Rebecca C. Deed, Lisa I. Pilkington
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-93468-2

Integrative biology defines novel biomarkers of resistance to strongylid infection in horses
Cited by: 5
Author(s): Guillaume Sallé, Cécile Canlet, Jacques Cortet, Christine Koch, Joshua Malsa, Fabrice Reigner, Mickaël Riou, Noémie Perrot, Alexandra Blanchard, Núria Mach
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.7861

Effects of ecological environment and host genotype on the phyllosphere bacterial communities of cigar tobacco (Nicotiana tabacum L.)
Cited by: 9
Author(s): Lei Xing, Jianlei Yang, Yuping Jia, Xiaobing Hu, Yi Liu, Heng Xu, Huaqun Yin, Juan Li, Zhenxie Yi
Software Mentions: 6
Published: over 3 years ago

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