Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa135

https://doi.org/10.1093/gigascience/giaa135

Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

Cited by: 33
Author(s): Christina Weißbecker, Beatrix Schnabel, Anna Heintz‐Buschart
Published: almost 4 years ago

Software Mentions 7

bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: anaconda
Please use the Anaconda installer.
Papers that mentioned: 22
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284