Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-6061-y

https://doi.org/10.1186/s12864-019-6061-y

Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks

Cited by: 12
Author(s): Jim A. Mossman, Leann M. Biancani, David M. Rand
Published: about 5 years ago

Software Mentions 6

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017